##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781211_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 261218 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.535667526740117 34.0 33.0 34.0 23.0 34.0 2 31.583535590962338 34.0 33.0 34.0 24.0 34.0 3 31.52373113644542 34.0 33.0 34.0 23.0 34.0 4 31.66532168533562 34.0 34.0 34.0 23.0 34.0 5 31.66814691177484 34.0 34.0 34.0 23.0 34.0 6 34.48702616205621 37.0 34.0 38.0 26.0 38.0 7 34.45426425437757 37.0 34.0 38.0 25.0 38.0 8 34.26891332144033 37.0 34.0 38.0 24.0 38.0 9 34.50473550827278 37.0 34.0 38.0 26.0 38.0 10-11 34.36804699523004 37.0 34.0 38.0 25.0 38.0 12-13 34.330325628402335 37.0 34.0 38.0 25.0 38.0 14-15 34.189334195958935 37.0 34.0 38.0 24.0 38.0 16-17 34.14329793505807 37.0 34.0 38.0 24.0 38.0 18-19 34.19842047638371 37.0 34.0 38.0 24.0 38.0 20-21 34.15427535621588 37.0 34.0 38.0 24.0 38.0 22-23 34.188486245205155 37.0 34.0 38.0 24.5 38.0 24-25 34.15306563866196 37.0 34.0 38.0 24.0 38.0 26-27 34.085344424963054 37.0 34.0 38.0 24.0 38.0 28-29 34.15141567579569 37.0 34.0 38.0 24.0 38.0 30-31 34.21180584798904 37.0 34.0 38.0 24.0 38.0 32-33 34.171117610578136 37.0 34.0 38.0 24.0 38.0 34-35 34.189942882956 37.0 34.0 38.0 24.0 38.0 36-37 34.04617790504483 37.0 34.0 38.0 23.5 38.0 38-39 34.06502231852322 37.0 34.0 38.0 24.0 38.0 40-41 34.07601505256146 37.0 34.0 38.0 24.0 38.0 42-43 34.16603373427559 37.0 34.0 38.0 24.0 38.0 44-45 34.18028811184528 37.0 34.0 38.0 24.0 38.0 46-47 34.177991179780875 37.0 34.0 38.0 24.0 38.0 48-49 34.14187192306809 37.0 34.0 38.0 24.0 38.0 50-51 34.02214242510087 37.0 34.0 38.0 24.0 38.0 52-53 34.115606504911604 37.0 34.0 38.0 24.0 38.0 54-55 34.08144538278373 37.0 34.0 38.0 24.0 38.0 56-57 34.0617511044415 37.0 34.0 38.0 24.0 38.0 58-59 34.04641908291159 37.0 34.0 38.0 24.0 38.0 60-61 34.02713059590074 37.0 34.0 38.0 24.0 38.0 62-63 33.99253114257057 37.0 34.0 38.0 24.0 38.0 64-65 33.99354753500907 37.0 34.0 38.0 24.0 38.0 66-67 33.88332924989855 37.0 34.0 38.0 23.0 38.0 68-69 33.63893567824576 37.0 34.0 38.0 22.5 38.0 70-71 33.80165034568827 37.0 34.0 38.0 23.0 38.0 72-73 33.77529687846932 37.0 34.0 38.0 23.0 38.0 74-75 33.7682452970316 37.0 34.0 38.0 23.0 38.0 76 32.36688513042746 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 31.0 14 122.0 15 292.0 16 689.0 17 1129.0 18 1451.0 19 1657.0 20 1748.0 21 1817.0 22 1948.0 23 2463.0 24 2919.0 25 3505.0 26 4485.0 27 5182.0 28 6098.0 29 7608.0 30 8964.0 31 10806.0 32 13230.0 33 16406.0 34 20631.0 35 26851.0 36 40529.0 37 80651.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.928619007878474 17.9003743999265 9.7386091310706 25.432397461124424 2 24.331784180263227 20.003598526900905 30.37960630584416 25.285010986991708 3 20.204197260525692 21.194940624306135 28.855591881110797 29.745270234057376 4 14.707638830402193 16.157002963042363 35.45352923611696 33.68182897043848 5 14.594706337235566 32.87560581583199 35.12545077291764 17.40423707401481 6 30.862344861380148 35.515163579845186 18.376222159269272 15.246269399505394 7 30.340941282759992 28.15923864358505 21.550582272278326 19.94923780137663 8 26.947224157600164 33.588420399819306 19.315284551600577 20.14907089097995 9 25.060294466690657 16.73353291120826 21.241644909615722 36.964527712485356 10-11 26.25412490716566 23.907234570358856 26.554448774586742 23.284191747888734 12-13 26.01065010833863 22.271053296480332 26.32379851311931 25.394498082061727 14-15 23.901109418187108 23.425835891860437 23.47847391833641 29.194580771616046 16-17 24.17597562189436 26.486306456676033 24.64895221615662 24.688765705272992 18-19 23.608250579975344 25.97275072927593 26.066733532911208 24.352265157837515 20-21 23.806935203546466 26.01868937056405 26.027685687816305 24.146689738073178 22-23 24.026100804691865 25.651754473275197 26.293746985276666 24.028397736756272 24-25 23.665291059574763 25.73922930272799 26.228093010435728 24.36738662726152 26-27 23.07459669701169 26.036682005068563 26.410699109556003 24.47802218836374 28-29 23.5135021323186 25.744397399872902 26.90645361345696 23.835646854351538 30-31 23.67754136391826 25.95590656080362 26.20722921085071 24.159322864427413 32-33 23.355779463896056 26.083003468367416 26.266949444525263 24.29426762321126 34-35 23.966763393028046 25.454983959757747 26.5249714797602 24.053281167454006 36-37 24.089075025457664 25.448093163564533 26.045104089304722 24.417727721673085 38-39 23.305246958479124 25.88451025580167 26.854198408991724 23.956044376727483 40-41 23.60518800388947 25.217060080086362 27.07393824315323 24.103813672870935 42-43 23.197099740446678 25.213997504000492 26.97421310935694 24.6146896461959 44-45 22.66918818764404 25.253045349095395 27.28334188302491 24.794424580235667 46-47 22.851411464753575 24.723602508249815 27.66290990666799 24.762076120328615 48-49 22.291534274054623 24.682066320085138 28.344524496780465 24.681874909079774 50-51 22.115818971127563 24.926306762933642 27.941030097466484 25.016844168472314 52-53 21.765536831305653 24.910036827477434 28.396014057224235 24.928412283992678 54-55 21.195746839319725 25.38784729200762 28.402384985692 25.01402088298066 56-57 20.995107534702814 25.481015856487684 28.24441654097344 25.279460067836062 58-59 21.36204243199167 25.262615899363748 27.936819055348405 25.438522613296172 60-61 21.093684202466907 25.07618158013613 28.074634979212764 25.7554992381842 62-63 20.867627805128283 24.955784057760187 28.28805825019715 25.88852988691438 64-65 21.541203133015337 24.843808619620393 27.604146728020275 26.010841519343998 66-67 21.591927049437633 24.83404665834667 27.116048664334002 26.45797762788169 68-69 21.49373320368428 24.681683498074406 27.071258489078087 26.753324809163225 70-71 21.926130664808703 24.75403685810319 26.913344409650175 26.406488067437927 72-73 22.048250886232953 24.34460871762283 26.62469661355649 26.982443782587723 74-75 22.217649625982897 24.64340129700097 26.479032838472083 26.659916238544053 76 22.67301640775138 24.4117939805067 26.006247655215187 26.908941956526732 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.5 8 1.0 9 0.5 10 0.5 11 0.5 12 0.0 13 2.5 14 8.0 15 23.5 16 47.5 17 59.0 18 77.0 19 119.0 20 206.5 21 270.0 22 329.5 23 486.5 24 707.0 25 830.0 26 994.0 27 1252.0 28 1735.5 29 2125.0 30 2398.5 31 2901.0 32 3745.5 33 4361.0 34 4762.0 35 5841.0 36 7325.5 37 8132.0 38 8804.5 39 10470.5 40 12376.0 41 13811.0 42 14334.0 43 14586.5 44 14933.0 45 15180.5 46 15334.0 47 15147.0 48 14083.5 49 12710.0 50 12213.0 51 11407.0 52 9749.0 53 8309.0 54 7721.0 55 7228.0 56 6281.5 57 5441.0 58 5054.0 59 4722.5 60 4257.5 61 4037.0 62 3950.0 63 3889.0 64 3606.0 65 3340.5 66 3232.5 67 3168.0 68 3057.0 69 2791.0 70 2518.0 71 2400.0 72 2270.0 73 2034.0 74 1781.5 75 1635.0 76 1505.5 77 1264.5 78 1025.0 79 897.0 80 793.5 81 579.5 82 381.5 83 294.0 84 244.5 85 160.0 86 101.0 87 77.0 88 64.0 89 33.5 90 15.0 91 10.5 92 7.0 93 7.0 94 5.0 95 2.5 96 2.0 97 1.0 98 0.0 99 2.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.9141100536716459E-4 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 261218.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.235527748578896 #Duplication Level Percentage of deduplicated Percentage of total 1 73.78566106087973 40.7558992897546 2 14.208232726515776 15.69598466047458 3 4.954710392648912 8.210281301379938 4 2.0154480811202022 4.452973536421402 5 1.0675437346157817 2.948317078809578 6 0.7075852366103147 2.345030638276428 7 0.5008592801245833 1.9365658665818273 8 0.3944249771132377 1.742901741445667 9 0.3506530259093353 1.743165444846442 >10 1.9837025088381743 19.052520445484163 >50 0.029793243373979608 1.034460428730947 >100 0.00138573224995254 0.08189956779445898 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.656440214686583E-4 0.0 2 0.0 0.0 0.0 0.0015312880429373167 0.0 3 0.0 0.0 0.0 0.0015312880429373167 0.0 4 0.0 0.0 0.0 0.002296932064405975 0.0 5 0.0 0.0 0.0 0.002296932064405975 0.0 6 0.0 0.0 0.0 0.0026797540751403045 0.0 7 0.0 0.0 0.0 0.0026797540751403045 0.0 8 0.0 0.0 0.0 0.0026797540751403045 0.0 9 0.0 0.0 0.0 0.0034453980966089627 0.0 10 0.0 0.0 0.0 0.00459386412881195 3.8282201073432917E-4 11 0.0 0.0 0.0 0.004976686139546279 3.8282201073432917E-4 12 0.0 0.0 0.0 0.004976686139546279 3.8282201073432917E-4 13 0.0 0.0 0.0 0.004976686139546279 3.8282201073432917E-4 14 0.0 0.0 0.0 0.004976686139546279 3.8282201073432917E-4 15 0.0 0.0 0.0 0.005359508150280609 3.8282201073432917E-4 16 0.0 0.0 0.0 0.005742330161014938 3.8282201073432917E-4 17 0.0 0.0 0.0 0.005742330161014938 3.8282201073432917E-4 18 0.0 0.0 0.0 0.006125152171749267 3.8282201073432917E-4 19 0.0 0.0 0.0 0.006125152171749267 3.8282201073432917E-4 20 0.0 0.0 0.0 0.006125152171749267 3.8282201073432917E-4 21 0.0 0.0 0.0 0.007273618203952254 3.8282201073432917E-4 22 0.0 0.0 0.0 0.0091877282576239 3.8282201073432917E-4 23 0.0 0.0 0.0 0.009953372279092558 3.8282201073432917E-4 24 0.0 0.0 0.0 0.011484660322029876 3.8282201073432917E-4 25 0.0 0.0 0.0 0.012633126354232863 3.8282201073432917E-4 26 0.0 0.0 0.0 0.014930058418638838 3.8282201073432917E-4 27 0.0 0.0 0.0 0.029094472815809017 3.8282201073432917E-4 28 0.0 0.0 0.0 0.04364170922371353 3.8282201073432917E-4 29 0.0 0.0 0.0 0.05895458965308669 3.8282201073432917E-4 30 0.0 0.0 0.0 0.08460366437228675 3.8282201073432917E-4 31 0.0 0.0 0.0 0.10642451898414351 3.8282201073432917E-4 32 0.0 0.0 0.0 0.13283923772481224 3.8282201073432917E-4 33 0.0 0.0 0.0 0.1730355488519168 3.8282201073432917E-4 34 0.0 0.0 0.0 0.23505271459087812 3.8282201073432917E-4 35 0.0 0.0 0.0 0.32616435314564846 3.8282201073432917E-4 36 0.0 0.0 0.0 0.48426984357892644 3.8282201073432917E-4 37 0.0 0.0 0.0 0.7403777687601927 3.8282201073432917E-4 38 0.0 0.0 0.0 1.0546746395730768 3.8282201073432917E-4 39 0.0 0.0 0.0 1.4183555497706897 3.8282201073432917E-4 40 0.0 0.0 0.0 1.829506389299359 3.8282201073432917E-4 41 0.0 0.0 0.0 2.3019087505455214 3.8282201073432917E-4 42 0.0 0.0 0.0 2.8543209120351585 3.8282201073432917E-4 43 0.0 0.0 0.0 3.4921023819185506 3.8282201073432917E-4 44 0.0 0.0 0.0 4.1999402797663254 3.8282201073432917E-4 45 0.0 0.0 0.0 5.006163434372823 3.8282201073432917E-4 46 0.0 0.0 0.0 5.882060194932968 3.8282201073432917E-4 47 0.0 0.0 0.0 6.736901744902725 3.8282201073432917E-4 48 0.0 0.0 0.0 7.557672135917127 3.8282201073432917E-4 49 0.0 0.0 0.0 8.350496520147923 3.8282201073432917E-4 50 0.0 0.0 0.0 9.07364729842507 3.8282201073432917E-4 51 0.0 0.0 0.0 9.808282737024248 3.8282201073432917E-4 52 0.0 0.0 0.0 10.52377707508671 3.8282201073432917E-4 53 0.0 0.0 0.0 11.261092267761027 3.8282201073432917E-4 54 0.0 0.0 0.0 12.044346101723464 3.8282201073432917E-4 55 0.0 0.0 0.0 12.919094396251406 3.8282201073432917E-4 56 0.0 0.0 0.0 13.690863569891814 3.8282201073432917E-4 57 0.0 0.0 0.0 14.43238980468421 3.8282201073432917E-4 58 0.0 0.0 0.0 15.189994563927447 3.8282201073432917E-4 59 0.0 0.0 0.0 15.919653316387079 3.8282201073432917E-4 60 0.0 0.0 0.0 16.649694890857443 3.8282201073432917E-4 61 0.0 0.0 0.0 17.34681377240466 3.8282201073432917E-4 62 0.0 0.0 0.0 17.99952530070669 3.8282201073432917E-4 63 0.0 0.0 0.0 18.706597554532994 3.8282201073432917E-4 64 0.0 0.0 0.0 19.3880207336401 3.8282201073432917E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCCAA 20 0.0069460543 52.5 40 GGTGACA 65 9.973519E-9 43.076923 19 GATCCTA 60 2.5895315E-7 40.833332 1 CGAAGCA 35 0.001253988 40.000004 48 GTGCGTC 45 9.1823815E-5 38.88889 54 CACTAAC 50 1.706874E-4 35.0 27 GTACAAG 45 0.0043024267 31.111113 1 CCAGAGT 45 0.0043024267 31.111113 3 GCGTCAT 45 0.0043024267 31.111113 56 CGTCATA 45 0.0043024267 31.111113 57 CTTACCG 45 0.0043024267 31.111113 9 GGTCGAT 80 2.458979E-6 30.625 10 GTTCTAG 60 4.9738795E-4 29.166666 1 AGTGCGT 60 4.9738795E-4 29.166666 53 GCTTAAC 60 4.9738795E-4 29.166666 13 CGTATTG 75 5.5717923E-5 28.0 57 TGGTTCG 50 0.0072003324 27.999998 35 GTATACC 50 0.0072003324 27.999998 1 CCGAAAT 50 0.0072003324 27.999998 47 TATAAGA 105 6.74303E-7 26.666666 2 >>END_MODULE