##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781211_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 243568 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.19063259541483 34.0 34.0 34.0 32.0 34.0 2 33.303779642646 34.0 34.0 34.0 33.0 34.0 3 33.33142695263746 34.0 34.0 34.0 33.0 34.0 4 33.42327399329961 34.0 34.0 34.0 34.0 34.0 5 33.4352993825133 34.0 34.0 34.0 34.0 34.0 6 36.8617634500427 38.0 37.0 38.0 34.0 38.0 7 36.76462014714576 38.0 37.0 38.0 34.0 38.0 8 36.53145733429679 38.0 37.0 38.0 34.0 38.0 9 36.51259196610392 38.0 37.0 38.0 34.0 38.0 10-11 36.44219273467779 38.0 37.0 38.0 34.0 38.0 12-13 36.38216432372069 38.0 37.0 38.0 34.0 38.0 14-15 36.388727172699205 38.0 37.0 38.0 34.0 38.0 16-17 36.33050113315378 38.0 37.0 38.0 34.0 38.0 18-19 36.333687101753924 38.0 37.0 38.0 34.0 38.0 20-21 36.26827210470998 38.0 37.0 38.0 34.0 38.0 22-23 36.330813161006375 38.0 37.0 38.0 34.0 38.0 24-25 36.320830322538264 38.0 37.0 38.0 34.0 38.0 26-27 36.11523886553242 38.0 37.0 38.0 33.0 38.0 28-29 36.09770782697234 38.0 37.0 38.0 32.5 38.0 30-31 36.1176262891677 38.0 37.0 38.0 33.5 38.0 32-33 36.02258506864612 38.0 37.0 38.0 32.0 38.0 34-35 36.05569286605794 38.0 37.0 38.0 32.5 38.0 36-37 36.04801739144715 38.0 37.0 38.0 32.5 38.0 38-39 35.95063801484596 38.0 37.0 38.0 32.0 38.0 40-41 36.00284314852526 38.0 37.0 38.0 32.0 38.0 42-43 36.02293609998029 38.0 37.0 38.0 32.0 38.0 44-45 35.98419127307364 38.0 37.0 38.0 32.0 38.0 46-47 36.01257349077055 38.0 37.0 38.0 32.0 38.0 48-49 35.985275159298425 38.0 37.0 38.0 32.0 38.0 50-51 35.906077563555144 38.0 36.5 38.0 32.0 38.0 52-53 35.92267662418708 38.0 37.0 38.0 32.0 38.0 54-55 35.94180885830651 38.0 37.0 38.0 32.0 38.0 56-57 35.88116049727386 38.0 37.0 38.0 32.0 38.0 58-59 35.883367273205025 38.0 37.0 38.0 32.0 38.0 60-61 35.888170859883076 38.0 37.0 38.0 31.5 38.0 62-63 35.84790900282468 38.0 36.0 38.0 31.0 38.0 64-65 35.819892186165674 38.0 36.0 38.0 31.0 38.0 66-67 35.78747824016291 38.0 36.0 38.0 31.0 38.0 68-69 35.70737124745451 38.0 36.0 38.0 31.0 38.0 70-71 35.59482567496551 38.0 36.0 38.0 31.0 38.0 72-73 35.48028271365696 38.0 36.0 38.0 31.0 38.0 74-75 35.491928332129014 38.0 36.0 38.0 31.0 38.0 76 34.53826446823885 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 7.0 21 8.0 22 28.0 23 70.0 24 146.0 25 315.0 26 608.0 27 1122.0 28 1876.0 29 3044.0 30 4786.0 31 7081.0 32 10101.0 33 14304.0 34 19880.0 35 27888.0 36 42604.0 37 109699.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 43.84155554095776 18.228174472837154 10.348239506010643 27.58203048019444 2 23.45833607041976 20.36720751494449 31.28571897786244 24.888737436773305 3 20.43453984103002 21.979488274321753 28.695477238389277 28.89049464625895 4 14.700617486697759 17.43660907836826 34.912221638310456 32.95055179662353 5 14.271168626420547 33.580765946265515 35.63563358076595 16.512431846547987 6 31.011462917953097 36.9605202653879 17.510510411876766 14.517506404782237 7 29.37865401037903 28.561633712146094 21.04545753136701 21.014254746107863 8 26.214034684359195 35.06084543125534 18.72988241476713 19.995237469618342 9 24.687972147408527 16.63806411351245 20.38855678906917 38.28540695000985 10-11 25.710684490573477 24.890174407147082 26.55233856664258 22.846802535636865 12-13 25.45736714182487 22.398467779018592 26.457498521973328 25.68666655718321 14-15 23.340709781252052 23.230678906917166 22.9687397359259 30.459871575904877 16-17 24.5235416803521 27.115630953162977 23.936436641923407 24.42439072456152 18-19 24.259549694541153 26.086349602575048 25.32167608224397 24.332424620639824 20-21 23.171763121592328 26.100719306312815 25.08765519280037 25.639862379294488 22-23 23.69174111541746 26.440665440451948 25.387571437955724 24.480022006174867 24-25 24.241690205609935 26.344388425408923 25.380386586086846 24.033534782894307 26-27 23.65889607830257 26.821667870984694 25.733265453589965 23.786170597122773 28-29 23.254080995861525 25.60968600144518 27.02879688629048 24.107436116402813 30-31 23.228420810615518 26.54474315180976 25.709247520199696 24.517588517375025 32-33 22.857477172699205 26.81653583393549 25.546254023517044 24.779732969848254 34-35 23.394698811009658 25.35924259344413 26.667090915062737 24.57896768048348 36-37 23.506577218682256 26.120015765617815 25.48261676410694 24.890790251592986 38-39 22.914134861722392 25.837548446429743 26.784101359784536 24.464215332063326 40-41 23.06501675096893 25.00636372594101 27.24311075346515 24.68550876962491 42-43 23.832358930565594 24.93307823687841 26.996362412139526 24.238200420416476 44-45 22.40606319385141 25.75913092031794 27.480826709584182 24.35397917624647 46-47 23.25284930696972 24.485769887669974 27.210470997832225 25.050909807528082 48-49 22.707416409380542 24.52785259147343 27.518393220784336 25.24633777836169 50-51 21.717959666294423 24.59805885830651 28.42019477107009 25.26378670432898 52-53 21.24375944294817 24.577325428627734 29.558891151547 24.620023976877096 54-55 20.773254286277343 24.941084214675165 28.699993430992578 25.585668068054918 56-57 21.49235531761151 24.941700059121068 27.633350850686462 25.932593772580965 58-59 20.705716678709845 24.78897063653682 28.876330224003155 25.628982460750183 60-61 21.41311666557183 25.552823030940026 27.32091243513105 25.71314786835709 62-63 20.00262760296919 26.291220521579188 27.256659331275046 26.44949254417657 64-65 20.337646981541088 26.80483478946331 26.459140773829077 26.39837745516652 66-67 20.482165144846615 26.51600374433423 25.809835446364055 27.1919956644551 68-69 20.277088944360507 27.092228864218615 25.52675228273008 27.103929908690798 70-71 20.77571766406096 26.5991427445313 25.30381659331275 27.32132299809499 72-73 20.60307593772581 25.75009853511134 25.49370196413322 28.153123563029624 74-75 20.637357945214475 25.908781120672664 25.27671943769296 28.17714149641989 76 20.939942849635422 26.13890166195888 24.75366222163831 28.16749326676739 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 1.5 12 3.0 13 3.0 14 3.5 15 18.5 16 39.5 17 46.0 18 73.0 19 122.0 20 176.5 21 209.0 22 287.5 23 485.5 24 764.0 25 923.0 26 1023.0 27 1230.0 28 1657.5 29 1978.0 30 2138.0 31 2693.5 32 3628.0 33 4167.0 34 4591.0 35 5521.0 36 6691.0 37 7355.0 38 7893.5 39 9505.5 40 11477.0 41 13134.5 42 13894.0 43 14249.0 44 14772.0 45 14642.0 46 14344.0 47 14069.5 48 13155.0 49 11764.5 50 11014.0 51 10407.0 52 8836.0 53 7352.5 54 6833.0 55 6397.0 56 5592.0 57 4889.0 58 4555.0 59 4259.5 60 3825.5 61 3683.0 62 3679.0 63 3478.5 64 3240.0 65 3155.0 66 3079.0 67 3050.0 68 2911.0 69 2683.0 70 2466.5 71 2339.0 72 2162.0 73 1882.5 74 1662.5 75 1545.0 76 1393.5 77 1129.0 78 921.5 79 827.0 80 734.5 81 553.0 82 394.0 83 324.0 84 265.0 85 164.5 86 108.0 87 93.0 88 70.0 89 33.5 90 15.5 91 8.0 92 5.0 93 3.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 243568.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.81509240122001 #Duplication Level Percentage of deduplicated Percentage of total 1 59.35832966649879 26.00790699119723 2 22.19849256124947 19.45258005477881 3 7.8179876230648375 10.276375502885406 4 3.129617988516284 5.48498005389445 5 1.5751565962620353 3.4507815905806134 6 1.0740413290139117 2.823553204408421 7 0.7576538046225211 2.323767002037015 8 0.5335276171816783 1.8701249476334378 9 0.46212559054829344 1.8223267905757659 >10 3.0256326063400825 23.05586018691404 >50 0.05950113238422091 1.5677046315196408 >100 0.0069417987781591065 0.5214095226783727 >500 0.0 0.0 >1k 9.916855397370152E-4 1.3426295208968098 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCCGT 3090 1.2686395585627013 No Hit TCTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCCG 326 0.13384352624318466 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.211259278722985E-4 0.0 2 0.0 0.0 0.0 0.001642251855744597 0.0 3 0.0 0.0 0.0 0.001642251855744597 0.0 4 0.0 0.0 0.0 0.0024633777836168954 0.0 5 0.0 0.0 0.0 0.0024633777836168954 0.0 6 0.0 0.0 0.0 0.002873940747553045 0.0 7 0.0 0.0 0.0 0.002873940747553045 0.0 8 0.0 0.0 0.0 0.002873940747553045 0.0 9 0.0 0.0 0.0 0.003284503711489194 0.0 10 0.0 0.0 0.0 0.0045161926032976415 0.0 11 0.0 0.0 0.0 0.004926755567233791 0.0 12 0.0 0.0 0.0 0.004926755567233791 0.0 13 0.0 0.0 0.0 0.004926755567233791 0.0 14 0.0 0.0 0.0 0.004926755567233791 0.0 15 0.0 0.0 0.0 0.004926755567233791 0.0 16 0.0 0.0 0.0 0.00574788149510609 0.0 17 0.0 0.0 0.0 0.00574788149510609 0.0 18 0.0 0.0 0.0 0.006158444459042239 0.0 19 0.0 0.0 0.0 0.006158444459042239 0.0 20 0.0 0.0 0.0 0.006158444459042239 0.0 21 0.0 0.0 0.0 0.006979570386914537 0.0 22 0.0 0.0 0.0 0.007390133350850686 0.0 23 0.0 0.0 0.0 0.008211259278722984 0.0 24 0.0 0.0 0.0 0.009442948170531432 0.0 25 0.0 0.0 0.0 0.010264074098403731 0.0 26 0.0 0.0 0.0 0.012727451882020627 0.0 27 0.0 0.0 0.0 0.027507718583722 0.0 28 0.0 0.0 0.0 0.041466859357551074 0.0 29 0.0 0.0 0.0 0.055836563095316295 0.0 30 0.0 0.0 0.0 0.08211259278722985 0.0 31 0.0 0.0 0.0 0.10715693358733495 0.0 32 0.0 0.0 0.0 0.1342540892071208 0.0 33 0.0 0.0 0.0 0.17531038560073572 0.0 34 0.0 0.0 0.0 0.24058989686658347 0.0 35 0.0 0.0 0.0 0.3378933193194508 0.0 36 0.0 0.0 0.0 0.500886816002102 0.0 37 0.0 0.0 0.0 0.7710372462720883 0.0 38 0.0 0.0 0.0 1.1064671878079222 0.0 39 0.0 0.0 0.0 1.4866484924127965 0.0 40 0.0 0.0 0.0 1.9103494711949025 0.0 41 0.0 0.0 0.0 2.4026144649543455 0.0 42 0.0 0.0 0.0 2.982329370032188 0.0 43 0.0 0.0 0.0 3.639230112330027 0.0 44 0.0 0.0 0.0 4.3692110622085005 0.0 45 0.0 0.0 0.0 5.2038855678906915 0.0 46 0.0 0.0 0.0 6.118209288576496 0.0 47 0.0 0.0 0.0 6.998045720291664 0.0 48 0.0 0.0 0.0 7.838057544505025 0.0 49 0.0 0.0 0.0 8.655898968665834 0.0 50 0.0 0.0 0.0 9.399017933390265 0.0 51 0.0 0.0 0.0 10.150348157393418 0.0 52 0.0 0.0 0.0 10.884024173947317 0.0 53 0.0 0.0 0.0 11.659577612822703 0.0 54 0.0 0.0 0.0 12.456069762858831 0.0 55 0.0 0.0 0.0 13.347401957564212 0.0 56 0.0 0.0 0.0 14.141020166852789 0.0 57 0.0 0.0 0.0 14.943260198384024 0.0 58 0.0 0.0 0.0 15.715939696511857 0.0 59 0.0 0.0 0.0 16.496830453918413 0.0 60 0.0 0.0 0.0 17.250213492741246 0.0 61 0.0 0.0 0.0 17.949812783288444 0.0 62 0.0 0.0 0.0 18.616977599684688 0.0 63 0.0 0.0 0.0 19.34080010510412 0.0 64 0.0 0.0 0.0 20.050663469749722 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGTCG 25 2.834271E-6 70.0 57 TCGTATG 545 0.0 55.22936 40 CGTATGC 560 0.0 54.375 41 CTCGTAT 545 0.0 53.944954 39 TATGCCG 545 0.0 53.944954 43 GGGTCTA 20 0.0069454936 52.5 1 GACGTAA 20 0.0069454936 52.5 53 TCTCGTA 480 0.0 52.5 38 AGTCGAC 20 0.0069454936 52.5 18 CCGTCTT 535 0.0 51.682243 47 GTATGCC 590 0.0 51.610172 42 GCCGTCT 555 0.0 50.45045 46 ATCTCGT 500 0.0 50.399998 37 CGTCTTC 535 0.0 50.373833 48 CTTGAAA 550 0.0 50.272724 57 GTCTTCT 540 0.0 49.25926 49 CTGCTTG 555 0.0 49.18919 54 TCTTCTG 555 0.0 49.18919 50 CATCTCG 520 0.0 48.46154 36 ATGCCGT 580 0.0 48.27586 44 >>END_MODULE