##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781210_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 820019 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.081049341539646 34.0 32.0 34.0 21.0 34.0 2 31.264093880751542 34.0 32.0 34.0 23.0 34.0 3 31.339122630085402 34.0 33.0 34.0 23.0 34.0 4 31.430107107274342 34.0 33.0 34.0 23.0 34.0 5 31.520107460924685 34.0 33.0 34.0 23.0 34.0 6 34.38675201428259 37.0 34.0 38.0 26.0 38.0 7 34.313253717291914 37.0 34.0 38.0 24.0 38.0 8 34.10080376186406 37.0 34.0 38.0 24.0 38.0 9 34.38828368610971 37.0 34.0 38.0 26.0 38.0 10-11 34.25844706037299 37.0 34.0 38.0 24.0 38.0 12-13 34.220023560429695 37.0 34.0 38.0 24.0 38.0 14-15 34.102065927740696 37.0 34.0 38.0 24.0 38.0 16-17 34.06136443179975 37.0 34.0 38.0 23.5 38.0 18-19 34.1255836755002 37.0 34.0 38.0 24.0 38.0 20-21 34.051754288620145 37.0 34.0 38.0 23.5 38.0 22-23 34.12761716496813 37.0 34.0 38.0 24.0 38.0 24-25 34.12764521309872 37.0 34.0 38.0 24.0 38.0 26-27 34.05402191900431 37.0 34.0 38.0 24.0 38.0 28-29 34.13930957697322 37.0 34.0 38.0 24.0 38.0 30-31 34.239255431886335 37.0 34.0 38.0 24.0 38.0 32-33 34.19210835358693 37.0 34.0 38.0 24.0 38.0 34-35 34.20775250329565 37.0 34.0 38.0 24.0 38.0 36-37 34.06283756839781 37.0 34.0 38.0 24.0 38.0 38-39 34.07383182584794 37.0 34.0 38.0 24.0 38.0 40-41 34.05879924733451 37.0 34.0 38.0 24.0 38.0 42-43 34.15823657744515 37.0 34.0 38.0 24.0 38.0 44-45 34.16382669182056 37.0 34.0 38.0 24.0 38.0 46-47 34.14971421393894 37.0 34.0 38.0 24.0 38.0 48-49 34.11877163821814 37.0 34.0 38.0 24.0 38.0 50-51 33.99669580826786 37.0 34.0 38.0 24.0 38.0 52-53 34.07945425654771 37.0 34.0 38.0 24.0 38.0 54-55 34.04487578946342 37.0 34.0 38.0 24.0 38.0 56-57 34.01491855676515 37.0 34.0 38.0 24.0 38.0 58-59 34.02280556913925 37.0 34.0 38.0 24.0 38.0 60-61 34.009910136228555 37.0 34.0 38.0 24.0 38.0 62-63 33.97569629484195 37.0 34.0 38.0 24.0 38.0 64-65 33.99224469189129 37.0 34.0 38.0 24.0 38.0 66-67 33.885714233450685 37.0 34.0 38.0 23.0 38.0 68-69 33.70293676122139 37.0 34.0 38.0 22.5 38.0 70-71 33.84768035862584 37.0 34.0 38.0 23.0 38.0 72-73 33.83054112160816 37.0 34.0 38.0 23.0 38.0 74-75 33.84415483055881 37.0 34.0 38.0 23.5 38.0 76 32.647917914097114 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 4.0 13 41.0 14 128.0 15 375.0 16 919.0 17 1918.0 18 3218.0 19 4265.0 20 5591.0 21 6598.0 22 8037.0 23 9487.0 24 11355.0 25 13530.0 26 15702.0 27 18557.0 28 21241.0 29 24770.0 30 28928.0 31 33917.0 32 40711.0 33 49160.0 34 60917.0 35 79163.0 36 117383.0 37 264101.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.69594485005835 17.88373196230819 9.006498629909796 24.41382455772366 2 23.158731687924305 21.852786337877536 31.53768388293442 23.45079809126374 3 19.354063747303414 22.770569950208472 31.425247463778277 26.450118838709834 4 13.601758008046156 17.467156248818625 37.626201344115195 31.304884399020022 5 13.150548950695045 33.45617601543378 36.96365572017234 16.42961931369883 6 28.334221524135415 38.15594516712418 19.919660398112725 13.590172910627683 7 27.27253880702764 31.519635520640378 22.537770466294074 18.670055206037908 8 24.741134046894036 36.1459917392158 21.002318238967636 18.110555974922534 9 24.44175073992188 17.876658955463228 22.189363904982688 35.4922263996322 10-11 24.087978449279834 25.5380668008912 28.782016026457924 21.591938723371044 12-13 24.6890011085109 23.930908917964096 28.17440815395741 23.205681819567594 14-15 22.521246458923514 25.01777397840782 25.42392310422076 27.037056458447918 16-17 22.41070023987249 28.652019038583255 26.03781131900602 22.899469402538234 18-19 21.635108454804097 28.22300458891806 27.91660924929788 22.22527770697996 20-21 21.905711940820883 28.29318588959524 27.77100286700674 22.030099302577135 22-23 21.873334642246096 27.90849968110495 28.02855787487851 22.189607801770446 24-25 21.95144258852539 27.815209159787763 27.745942472064673 22.48740577962218 26-27 21.610413905043664 27.82453821191948 27.873195621077073 22.691852261959784 28-29 21.554988360025803 27.888622092902725 28.343672524661013 22.212717022410455 30-31 21.787361024561626 28.14946970740922 28.06373998651251 21.999429281516647 32-33 21.395784731817187 28.25641844884082 28.26391827506436 22.08387854427763 34-35 21.850774189378537 27.580702398359065 28.461291750557 22.1072316617054 36-37 22.018270308370905 27.84106221929004 27.766429802236292 22.374237670102765 38-39 21.613035795512054 27.864171439930054 28.325563188170026 22.197229576387866 40-41 21.543098391622635 27.68234638465694 28.69677409913673 22.077781124583698 42-43 21.407430803432604 27.568507558971195 28.576898827953983 22.447162809642215 44-45 21.305664868740845 27.343695694855853 28.680920807932498 22.669718628470804 46-47 21.399199286845793 27.327598506863865 28.67744527870696 22.595756927583384 48-49 20.983721108901136 27.337659249358857 29.07475314596369 22.603866495776316 50-51 21.145180782396505 27.277721613767486 28.96304841717082 22.614049186665184 52-53 20.68982547965352 27.188211492660535 29.375721782056267 22.746241245629676 54-55 20.563060124216634 27.34192744314461 29.32810093424665 22.766911498392112 56-57 20.610548317900726 27.13547402066055 29.284941653648644 22.969036007790084 58-59 20.43095526852846 27.05808609715304 29.302311968493278 23.20864666582522 60-61 20.413577548229274 27.285337899100686 28.970427998007352 23.33065655466269 62-63 20.311359588496085 27.230854501098456 29.0912438957021 23.366542014703363 64-65 20.474966342120155 26.925145363017304 29.101200464381183 23.49868783048136 66-67 20.487831944742542 26.852829700883884 28.800657548145402 23.858680806228172 68-69 20.697863580876984 26.772249843600804 28.547944737731047 23.98194183779117 70-71 21.13796351907124 26.84753679037338 28.187447219114226 23.827052471441156 72-73 20.875019511814404 26.67758921777136 28.352495561062224 24.094895709352013 74-75 21.017734998176866 26.6562156638216 28.14880667108121 24.17724266692032 76 21.083317683270366 26.65539049142824 27.757073625213106 24.50421820008829 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1.0 1 1.0 2 0.5 3 0.0 4 0.0 5 0.0 6 0.5 7 1.0 8 1.0 9 1.5 10 4.0 11 12.5 12 19.0 13 20.5 14 52.0 15 128.5 16 270.5 17 366.0 18 531.0 19 918.0 20 1506.0 21 1872.0 22 2397.5 23 3641.5 24 5295.5 25 6231.0 26 7110.0 27 9152.5 28 11695.0 29 13074.0 30 14648.5 31 17776.0 32 21104.5 33 22880.0 34 24997.0 35 28649.5 36 32283.0 37 34381.0 38 36160.0 39 39508.0 40 42764.0 41 44555.5 42 44660.0 43 44563.5 44 43914.5 45 42947.5 46 42533.0 47 41205.0 48 38227.5 49 34920.0 50 33262.0 51 31460.5 52 27844.5 53 24573.5 54 23117.0 55 21970.5 56 19590.0 57 17014.5 58 15673.0 59 14230.5 60 11722.5 61 9720.0 62 8783.0 63 7975.5 64 6516.5 65 5464.5 66 4701.5 67 4339.0 68 4120.0 69 3607.0 70 3098.5 71 2884.0 72 2718.5 73 2380.5 74 2112.5 75 2017.0 76 1845.0 77 1552.5 78 1251.5 79 1071.0 80 988.5 81 812.5 82 627.5 83 536.0 84 429.0 85 276.0 86 182.0 87 134.0 88 103.5 89 56.5 90 36.0 91 22.0 92 12.0 93 14.5 94 12.5 95 7.0 96 6.0 97 4.5 98 2.5 99 5.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 2.4389678775735686E-4 58-59 4.268193785753745E-4 60-61 4.268193785753745E-4 62-63 3.0487098469669604E-4 64-65 3.6584518163603526E-4 66-67 3.6584518163603526E-4 68-69 2.4389678775735686E-4 70-71 1.8292259081801763E-4 72-73 3.6584518163603526E-4 74-75 2.4389678775735686E-4 76 1.2194839387867843E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 820019.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.59693330368023 #Duplication Level Percentage of deduplicated Percentage of total 1 73.03445612032976 47.17801890875503 2 17.177187220828703 22.191872344974 3 5.796631660654661 11.233338863079307 4 1.931405934019898 4.990516012088622 5 0.6268769077343667 2.024716289926709 6 0.2859228075487175 1.1081841917535302 7 0.18055720529053637 0.8164409223356175 8 0.13773968397302075 0.7118048943100171 9 0.11579950995233021 0.6732263898890576 >10 0.6922480224258306 8.171211737602778 >50 0.020418810038557476 0.8419359155245063 >100 7.561172036081307E-4 0.05873352976085167 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.316903632720705E-4 0.0 2 0.0 0.0 0.0 7.316903632720705E-4 0.0 3 0.0 0.0 0.0 8.53638757150749E-4 0.0 4 0.0 0.0 0.0 0.001463380726544141 0.0 5 0.0 0.0 0.0 0.001463380726544141 0.0 6 0.0 0.0 0.0 0.0015853291204228194 0.0 7 0.0 0.0 0.0 0.0015853291204228194 0.0 8 0.0 0.0 0.0 0.001707277514301498 0.0 9 0.0 0.0 0.0 0.002073122695937533 0.0 10 0.0 0.0 0.0 0.00231701948369489 0.0 11 0.0 0.0 0.0 0.00231701948369489 0.0 12 0.0 0.0 0.0 0.00231701948369489 0.0 13 0.0 0.0 0.0 0.00231701948369489 0.0 14 0.0 0.0 0.0 0.0024389678775735683 0.0 15 0.0 0.0 0.0 0.002560916271452247 0.0 16 0.0 0.0 0.0 0.0026828646653309254 0.0 17 0.0 0.0 0.0 0.0026828646653309254 0.0 18 0.0 0.0 0.0 0.0028048130592096036 0.0 19 0.0 0.0 0.0 0.002926761453088282 0.0 20 0.0 0.0 0.0 0.0036584518163603526 0.0 21 0.0 0.0 0.0 0.0039023486041177093 0.0 22 0.0 0.0 0.0 0.00463403896738978 0.0 23 0.0 0.0 0.0 0.004877935755147137 0.0 24 0.0 0.0 0.0 0.005853522906176564 0.0 25 0.0 0.0 0.0 0.006463264875569957 0.0 26 0.0 0.0 0.0 0.007073006844963348 0.0 27 0.0 0.0 0.0 0.010975355449081058 0.0 28 0.0 0.0 0.0 0.01829225908180176 0.0 29 0.0 0.0 0.0 0.030487098469669606 0.0 30 0.0 0.0 0.0 0.03829179567790503 0.0 31 0.0 0.0 0.0 0.05048663506577287 0.0 32 0.0 0.0 0.0 0.06475459714957824 0.0 33 0.0 0.0 0.0 0.08219321747422925 0.0 34 0.0 0.0 0.0 0.11121693521735472 0.0 35 0.0 0.0 0.0 0.15219159556059067 0.0 36 0.0 0.0 0.0 0.2158486571652608 0.0 37 0.0 0.0 0.0 0.3214559662641963 0.0 38 0.0 0.0 0.0 0.4881594206963497 0.0 39 0.0 0.0 0.0 0.7013252131962796 0.0 40 0.0 0.0 0.0 0.9618069825211367 0.0 41 0.0 0.0 0.0 1.2238740809664166 0.0 42 0.0 0.0 0.0 1.4928922378627811 0.0 43 0.0 0.0 0.0 1.805080126192198 0.0 44 0.0 0.0 0.0 2.1381211898748687 0.0 45 0.0 0.0 0.0 2.5143319849905916 0.0 46 0.0 0.0 0.0 2.9432244862619035 0.0 47 0.0 0.0 0.0 3.426993764778621 0.0 48 0.0 0.0 0.0 3.936981947979254 0.0 49 0.0 0.0 0.0 4.479042558769979 0.0 50 0.0 0.0 0.0 5.027688382830154 0.0 51 0.0 0.0 0.0 5.51901846176735 0.0 52 0.0 0.0 0.0 6.007787624433092 0.0 53 0.0 0.0 0.0 6.468752553294497 0.0 54 0.0 0.0 0.0 6.892401273629026 0.0 55 0.0 0.0 0.0 7.340561621133169 0.0 56 0.0 0.0 0.0 7.802136291963967 0.0 57 0.0 0.0 0.0 8.2566379559498 0.0 58 0.0 0.0 0.0 8.745041273433909 0.0 59 0.0 0.0 0.0 9.225030151740386 0.0 60 0.0 0.0 0.0 9.766237123773962 0.0 61 0.0 0.0 0.0 10.261225654527516 0.0 62 0.0 0.0 0.0 10.708898208456146 0.0 63 0.0 0.0 0.0 11.160229214201134 0.0 64 0.0 0.0 0.0 11.580707276294818 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTATCG 40 0.0024190303 35.0 35 TTACGTC 60 4.983062E-4 29.166666 33 CGCGGTA 50 0.007209182 28.000002 43 ATCGATA 50 0.007209182 28.000002 23 AATCGAT 75 5.586145E-5 28.0 22 TCGTTCG 65 7.9573813E-4 26.923077 24 CGAAACG 65 7.9573813E-4 26.923077 15 CGTGATA 70 0.0012262547 25.000002 24 CGATTGA 80 0.0026665016 21.875 54 GGTCCTA 200 1.0677468E-9 21.000002 1 CGAAAGG 85 0.0037898524 20.588236 56 GCGTTGG 85 0.0037898524 20.588236 50 CGTCAGA 125 7.8228695E-5 19.6 2 TCCCGCG 90 0.005275602 19.444443 2 TCGAGTG 90 0.005275602 19.444443 40 GCTATAA 275 7.2759576E-12 19.090908 1 GGTATTA 295 1.8189894E-12 18.983051 1 GTATAAG 410 0.0 18.780487 1 GCGGATG 150 1.4956189E-5 18.666666 13 CGAATCT 730 0.0 18.219177 69 >>END_MODULE