##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781210_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 732849 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.31217617817586 34.0 34.0 34.0 33.0 34.0 2 33.36330403671152 34.0 34.0 34.0 33.0 34.0 3 33.40605090543891 34.0 34.0 34.0 34.0 34.0 4 33.45514833205749 34.0 34.0 34.0 34.0 34.0 5 33.472937808470775 34.0 34.0 34.0 34.0 34.0 6 36.95029944777164 38.0 37.0 38.0 35.0 38.0 7 36.868867938688595 38.0 37.0 38.0 34.0 38.0 8 36.64318297493754 38.0 37.0 38.0 34.0 38.0 9 36.60897674691512 38.0 37.0 38.0 34.0 38.0 10-11 36.53927412058964 38.0 37.0 38.0 34.0 38.0 12-13 36.489400954357585 38.0 37.0 38.0 34.0 38.0 14-15 36.50453981652428 38.0 37.0 38.0 34.0 38.0 16-17 36.46013503463878 38.0 37.0 38.0 34.0 38.0 18-19 36.46545127304533 38.0 37.0 38.0 34.0 38.0 20-21 36.39990502818452 38.0 37.0 38.0 34.0 38.0 22-23 36.45435962933701 38.0 37.0 38.0 34.0 38.0 24-25 36.455660715918285 38.0 37.0 38.0 34.0 38.0 26-27 36.272165889562515 38.0 37.0 38.0 34.0 38.0 28-29 36.25248789314033 38.0 37.0 38.0 34.0 38.0 30-31 36.27800474586169 38.0 37.0 38.0 34.0 38.0 32-33 36.23956572227021 38.0 37.0 38.0 34.0 38.0 34-35 36.247383840327274 38.0 37.0 38.0 34.0 38.0 36-37 36.216020626350044 38.0 37.0 38.0 34.0 38.0 38-39 36.21838264089874 38.0 37.0 38.0 34.0 38.0 40-41 36.20825094937702 38.0 37.0 38.0 34.0 38.0 42-43 36.20363130740439 38.0 37.0 38.0 34.0 38.0 44-45 36.17099566213504 38.0 37.0 38.0 34.0 38.0 46-47 36.189191770746774 38.0 37.0 38.0 34.0 38.0 48-49 36.177140857120634 38.0 37.0 38.0 34.0 38.0 50-51 36.10474668042121 38.0 37.0 38.0 33.5 38.0 52-53 36.13365713810075 38.0 37.0 38.0 34.0 38.0 54-55 36.14203676337144 38.0 37.0 38.0 34.0 38.0 56-57 36.087196680352974 38.0 37.0 38.0 33.0 38.0 58-59 36.10709504959412 38.0 37.0 38.0 34.0 38.0 60-61 36.10621082924313 38.0 37.0 38.0 33.5 38.0 62-63 36.081106749139316 38.0 37.0 38.0 33.5 38.0 64-65 36.034850972028345 38.0 37.0 38.0 32.0 38.0 66-67 36.03582593412831 38.0 37.0 38.0 32.0 38.0 68-69 36.0027079248249 38.0 37.0 38.0 32.0 38.0 70-71 35.96548402194722 38.0 37.0 38.0 32.0 38.0 72-73 35.93821169163088 38.0 37.0 38.0 32.0 38.0 74-75 35.94361253136731 38.0 37.0 38.0 32.0 38.0 76 35.18657731674602 38.0 36.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 2.0 20 7.0 21 29.0 22 66.0 23 153.0 24 349.0 25 765.0 26 1458.0 27 2628.0 28 4615.0 29 7630.0 30 12047.0 31 18556.0 32 27137.0 33 38927.0 34 54251.0 35 77688.0 36 123651.0 37 362887.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.724428906909885 18.310729768342455 9.383924928600571 24.580916396147092 2 23.36211143086775 22.46724768676767 30.792837269341977 23.377803613022603 3 19.932755588122518 23.34014237585096 30.84455324357405 25.88254879245247 4 13.74307667746016 17.979829405511914 37.48725863035905 30.789835286668875 5 13.068585752317327 34.16147118983584 36.78056461835931 15.989378439487535 6 28.783828592247517 38.64479585835554 19.3334506835651 13.237924865831843 7 27.128098694273987 31.8646815373972 22.219174754963163 18.788045013365647 8 24.5245609941475 37.04228292595064 20.398608717484777 18.034547362417086 9 24.297501941054705 17.87530582698482 21.83492097280613 35.99227125915434 10-11 23.700584977259982 26.148838300932386 28.576487107166688 21.574089614640943 12-13 24.484580043092098 24.34676174764515 28.082865638078243 23.085792571184513 14-15 22.29947779146864 25.036194359274553 25.31776668863572 27.346561160621086 16-17 22.52899301220306 29.007066940119998 25.872724121885955 22.59121592579099 18-19 21.80619745677486 28.384564896724974 27.61892286132614 22.190314785174024 20-21 21.80155802900734 28.426456200390533 27.562840366842284 22.209145403759848 22-23 21.66831093444898 28.349086919679223 27.887054495537278 22.095547650334517 24-25 22.262430596207405 28.078157983431783 27.497342563065512 22.162068857295296 26-27 21.748955105349125 27.975544757514847 27.80170266999068 22.473797467145346 28-29 21.4280840937219 27.859968424600428 28.276357066735443 22.435590414942233 30-31 21.672541000942896 28.045067947148734 28.127144882506492 22.15524616940188 32-33 21.59653625781027 28.345402668216778 28.00228969405703 22.055771379915917 34-35 21.81820538746727 27.889305982542105 28.1449520979083 22.147536532082327 36-37 22.11376422700993 28.221639109830264 27.659449627413014 22.00514703574679 38-39 21.474546598276042 28.1219596397075 28.337215442744686 22.066278319271774 40-41 21.463016255736175 27.617763004384262 28.738253037119517 22.18096770276005 42-43 21.61993807728468 27.62751944807184 28.641916684064523 22.110625790578958 44-45 21.285694597386364 27.683874850071433 28.753262950485027 22.277167602057176 46-47 21.52469335429263 27.427614692794833 28.548786994319432 22.49890495859311 48-49 21.12249590297592 27.266189897236675 28.91113994833861 22.7001742514488 50-51 20.93760106106442 27.226686534333812 29.182682926496454 22.653029478105314 52-53 20.63494662611261 27.132124080131103 29.710349608173036 22.522579685583253 54-55 20.410343740661446 27.343627404826915 29.477286589734035 22.7687422647776 56-57 20.554302455212465 27.166373973356038 29.034289464814716 23.245034106616778 58-59 20.161724993825466 26.970767511451882 29.642463863633573 23.22504363108908 60-61 20.407000623593675 27.51808353426149 28.791742910203876 23.28317293194096 62-63 19.96298009549034 27.71484985310753 28.800134816312774 23.522035235089355 64-65 19.864460482309454 27.614419887316487 28.56980087303114 23.951318757342918 66-67 19.828027328958626 27.526953028522925 28.27171763896792 24.373302003550528 68-69 20.06859530408038 27.61796768502106 28.02657846295758 24.28685854794098 70-71 20.411640051361193 27.519925659992712 27.544487336409002 24.52394695223709 72-73 20.216852312004246 27.147475127891283 27.558678527227297 25.07699403287717 74-75 20.231521090975086 26.982570761507485 27.311970133001477 25.47393801451595 76 20.232817401674833 27.08798128946072 27.11418041097143 25.565020897893014 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 2.0 11 8.0 12 13.0 13 14.0 14 35.5 15 98.0 16 236.5 17 333.0 18 482.5 19 845.5 20 1502.5 21 1946.0 22 2317.5 23 3323.0 24 4779.0 25 5601.0 26 6682.0 27 8742.5 28 10837.5 29 11953.0 30 13348.5 31 16229.0 32 19462.5 33 21211.0 34 22792.5 35 25707.5 36 28829.5 37 30618.0 38 32049.5 39 35041.0 40 37734.0 41 38976.5 42 39086.0 43 39308.0 44 39141.0 45 38389.0 46 38026.0 47 37100.0 48 34384.0 49 30988.0 50 29382.0 51 27643.0 52 24312.5 53 21845.0 54 20969.0 55 19764.0 56 17527.0 57 15212.0 58 13929.0 59 12782.0 60 10484.5 61 8545.5 62 7757.0 63 6894.5 64 5682.0 65 4959.5 66 4237.5 67 3888.0 68 3589.0 69 3161.5 70 2813.5 71 2594.0 72 2412.5 73 2183.5 74 1968.5 75 1801.0 76 1675.0 77 1459.5 78 1220.5 79 1071.0 80 919.5 81 688.5 82 509.0 83 409.0 84 365.0 85 248.0 86 132.5 87 90.0 88 94.5 89 68.5 90 33.0 91 18.5 92 9.0 93 8.0 94 3.5 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 732849.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.252311574820595 #Duplication Level Percentage of deduplicated Percentage of total 1 64.86562790810608 37.78572767399373 2 22.30224127401243 25.98314215021192 3 7.734866388135784 13.517215404938787 4 2.442337650736074 5.690872552063725 5 0.8586084017332388 2.500796206926168 6 0.3612419204168485 1.2625906141205283 7 0.22466870834556432 0.9161230119760815 8 0.17277892841745282 0.8051817577389668 9 0.12673477157175939 0.6644334060865658 >10 0.8807226153474115 9.327563456338329 >50 0.028300409421131812 1.0321865593174888 >100 0.0016371457870937023 0.17043539362608978 >500 0.0 0.0 >1k 2.3387796914357633E-4 0.3437318126616259 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCCTCGCAGATCTCGTATGCCGT 2523 0.3442728311016321 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.822687893413241E-4 0.0 2 0.0 0.0 0.0 6.822687893413241E-4 0.0 3 0.0 0.0 0.0 8.187225472095889E-4 0.0 4 0.0 0.0 0.0 0.001500991336550913 0.0 5 0.0 0.0 0.0 0.001500991336550913 0.0 6 0.0 0.0 0.0 0.0016374450944191777 0.0 7 0.0 0.0 0.0 0.0016374450944191777 0.0 8 0.0 0.0 0.0 0.0017738988522874425 0.0 9 0.0 0.0 0.0 0.002319713883760502 0.0 10 0.0 0.0 0.0 0.0024561676416287666 0.0 11 0.0 0.0 0.0 0.0024561676416287666 0.0 12 0.0 0.0 0.0 0.0024561676416287666 0.0 13 0.0 0.0 0.0 0.0024561676416287666 0.0 14 0.0 0.0 0.0 0.0025926213994970316 1.364537578682648E-4 15 0.0 0.0 0.0 0.0027290751573652962 1.364537578682648E-4 16 0.0 0.0 0.0 0.0027290751573652962 1.364537578682648E-4 17 1.364537578682648E-4 0.0 0.0 0.0027290751573652962 1.364537578682648E-4 18 1.364537578682648E-4 0.0 0.0 0.0027290751573652962 1.364537578682648E-4 19 1.364537578682648E-4 0.0 0.0 0.0028655289152335612 1.364537578682648E-4 20 1.364537578682648E-4 0.0 0.0 0.003547797704574885 1.364537578682648E-4 21 1.364537578682648E-4 0.0 0.0 0.00368425146244315 1.364537578682648E-4 22 1.364537578682648E-4 0.0 0.0 0.0038207052203114147 1.364537578682648E-4 23 1.364537578682648E-4 0.0 0.0 0.0045029740096527385 1.364537578682648E-4 24 1.364537578682648E-4 0.0 0.0 0.004912335283257533 1.364537578682648E-4 25 1.364537578682648E-4 0.0 0.0 0.005594604072598857 1.364537578682648E-4 26 1.364537578682648E-4 0.0 0.0 0.006276872861940182 1.364537578682648E-4 27 1.364537578682648E-4 0.0 0.0 0.010506939355856391 1.364537578682648E-4 28 1.364537578682648E-4 0.0 0.0 0.018557711070084016 1.364537578682648E-4 29 1.364537578682648E-4 0.0 0.0 0.03220308685691049 1.364537578682648E-4 30 1.364537578682648E-4 0.0 0.0 0.041345488634084236 1.364537578682648E-4 31 1.364537578682648E-4 0.0 0.0 0.05526377193664725 1.364537578682648E-4 32 1.364537578682648E-4 0.0 0.0 0.0709559540914977 1.364537578682648E-4 33 1.364537578682648E-4 0.0 0.0 0.0903323877087913 1.364537578682648E-4 34 1.364537578682648E-4 0.0 0.0 0.12171675201849222 1.364537578682648E-4 35 1.364537578682648E-4 0.0 0.0 0.16565486205207347 1.364537578682648E-4 36 1.364537578682648E-4 0.0 0.0 0.23661081614357118 1.364537578682648E-4 37 1.364537578682648E-4 0.0 0.0 0.3575088456148538 1.364537578682648E-4 38 1.364537578682648E-4 0.0 0.0 0.5432224100735622 1.364537578682648E-4 39 1.364537578682648E-4 0.0 0.0 0.7772406048176363 1.364537578682648E-4 40 1.364537578682648E-4 0.0 0.0 1.060927967425759 1.364537578682648E-4 41 1.364537578682648E-4 0.0 0.0 1.3504828416222168 1.364537578682648E-4 42 1.364537578682648E-4 0.0 0.0 1.6444042360704592 1.364537578682648E-4 43 1.364537578682648E-4 0.0 0.0 1.9839011856467021 1.364537578682648E-4 44 1.364537578682648E-4 0.0 0.0 2.343866198903185 1.364537578682648E-4 45 1.364537578682648E-4 0.0 0.0 2.75472846384453 1.364537578682648E-4 46 1.364537578682648E-4 0.0 0.0 3.2162150729550016 1.364537578682648E-4 47 1.364537578682648E-4 0.0 0.0 3.728462479992468 1.364537578682648E-4 48 4.0936127360479443E-4 0.0 0.0 4.272776520128976 1.364537578682648E-4 49 4.0936127360479443E-4 0.0 0.0 4.849157193364527 1.364537578682648E-4 50 4.0936127360479443E-4 0.0 0.0 5.434407360861514 1.364537578682648E-4 51 4.0936127360479443E-4 0.0 0.0 5.950202565603555 1.364537578682648E-4 52 4.0936127360479443E-4 0.0 0.0 6.471728828176063 1.364537578682648E-4 53 4.0936127360479443E-4 0.0 0.0 6.957367752429218 1.364537578682648E-4 54 4.0936127360479443E-4 0.0 0.0 7.412850396193486 1.364537578682648E-4 55 4.0936127360479443E-4 0.0 0.0 7.888801103637993 1.364537578682648E-4 56 4.0936127360479443E-4 0.0 0.0 8.380443993237352 1.364537578682648E-4 57 4.0936127360479443E-4 0.0 0.0 8.879318932003727 1.364537578682648E-4 58 4.0936127360479443E-4 0.0 0.0 9.400435833302632 1.364537578682648E-4 59 4.0936127360479443E-4 0.0 0.0 9.92742024618987 1.364537578682648E-4 60 4.0936127360479443E-4 0.0 0.0 10.49670532401627 1.364537578682648E-4 61 4.0936127360479443E-4 0.0 0.0 11.018777401620252 1.364537578682648E-4 62 4.0936127360479443E-4 0.0 0.0 11.490634496328711 1.364537578682648E-4 63 4.0936127360479443E-4 0.0 0.0 11.970133001477794 1.364537578682648E-4 64 4.0936127360479443E-4 0.0 0.0 12.416609697222757 1.364537578682648E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCGTCT 475 0.0 53.052635 46 CGTATGC 480 0.0 52.5 41 TATGCCG 480 0.0 52.5 43 TCGTATG 490 0.0 51.428574 40 CTCGTAT 470 0.0 49.89362 39 CCGTCTT 525 0.0 48.0 47 CGTCTTC 520 0.0 47.78846 48 TCTCGTA 445 0.0 46.404495 38 ATGCCGT 545 0.0 46.238533 44 TGCCGTC 540 0.0 46.01852 45 ATCTCGT 445 0.0 45.617977 37 CGCAGAT 480 0.0 44.479164 32 GTATGCC 580 0.0 43.448277 42 TCGCAGA 595 0.0 42.352943 31 GATCTCG 535 0.0 37.943924 36 CCTCGCA 715 0.0 35.734264 29 CTCGCAG 735 0.0 35.238094 30 AGATCTC 620 0.0 32.741936 35 GCAGATC 625 0.0 31.919998 33 CCCTCGC 845 0.0 31.065086 28 >>END_MODULE