SRR1781209_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781209_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29531
Sequences flagged as poor quality	0
Sequence length	76
%GC	60

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGT	5106	17.290305103111983	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCG	488	1.652500761911212	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCATACCTCGTATGCCGT	287	0.9718600792387659	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCC	264	0.8939758220175408	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCATAACTCGTATGCCGT	183	0.6196877857167045	No Hit
ATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGTCTT	114	0.38603501405302904	Illumina PCR Primer Index 6 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAACGCCATAGCTCGTATGCCGT	98	0.33185466120348106	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCC	63	0.21333513934509496	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGC	45	0.15238224238935358	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAACGCCATACCTCGTATGCCG	40	0.13545088212386983	No Hit
CTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGTC	36	0.12190579391148285	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCATATTTCGTATGCCGT	30	0.10158816159290236	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAACTCC	15	0.0022034193	70.0	68
CCGCTTG	20	7.801469E-5	70.0	54
TAGCTCG	15	0.0022034193	70.0	36
GCTCGTA	15	0.0022034193	70.0	38
AAAACTC	30	9.900941E-8	70.0	67
AAAAAGC	15	0.0022034193	70.0	66
CATATCT	745	0.0	59.664433	34
TATCTCG	740	0.0	59.594593	36
ATATCTC	740	0.0	59.594593	35
CCATATC	760	0.0	59.40789	33
CTCGTAT	805	0.0	59.130436	39
TTCTGCT	765	0.0	59.019608	52
TCTCGTA	745	0.0	58.72484	38
CTGCTTG	775	0.0	58.709675	54
TGCTTGA	765	0.0	58.56209	55
GCTTGAA	790	0.0	58.481014	56
ATCTCGT	755	0.0	58.410595	37
CTTGAAA	785	0.0	58.407646	57
ATACCTC	30	8.180314E-6	58.333332	35
TACCTCG	30	8.180314E-6	58.333332	36