##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781208_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16837 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.343469739264716 31.0 12.0 34.0 12.0 34.0 2 25.604086238641088 31.0 12.0 34.0 12.0 34.0 3 25.533408564471106 31.0 11.0 34.0 11.0 34.0 4 25.534240066520162 31.0 11.0 34.0 11.0 34.0 5 25.648927956286748 32.0 11.0 34.0 11.0 34.0 6 26.694422996970957 31.0 11.0 37.0 11.0 38.0 7 27.007721090455544 31.0 12.0 37.0 12.0 38.0 8 26.679455960087903 31.0 11.0 37.0 11.0 38.0 9 27.43855793787492 33.0 12.0 37.0 11.0 38.0 10-11 26.99759458335808 31.5 11.0 37.0 11.0 38.0 12-13 26.96691809704817 31.0 11.0 37.0 11.0 38.0 14-15 26.84747876700125 31.0 11.0 37.0 11.0 38.0 16-17 26.525657777513807 31.0 11.0 37.0 11.0 38.0 18-19 26.63868266318228 31.0 11.0 37.0 11.0 38.0 20-21 26.750816653798182 31.0 11.0 37.0 11.0 38.0 22-23 26.6304864286987 31.0 11.0 37.0 11.0 38.0 24-25 26.60764981885134 31.0 11.0 37.0 11.0 38.0 26-27 26.520787551226466 31.0 11.0 37.0 11.0 38.0 28-29 26.568747401556095 31.0 11.0 37.0 11.0 38.0 30-31 26.639781433747103 31.0 11.0 37.0 11.0 38.0 32-33 26.554908831739624 31.0 11.0 37.0 11.0 38.0 34-35 26.551404644532873 31.0 11.0 37.0 11.0 38.0 36-37 26.467571420086713 31.0 11.0 37.0 11.0 38.0 38-39 26.551464037536377 31.0 11.0 37.0 11.0 38.0 40-41 26.500920591554312 31.0 11.0 37.0 11.0 38.0 42-43 26.57741878006771 31.0 11.0 37.0 11.0 38.0 44-45 26.642008671378512 31.0 11.0 37.0 11.0 38.0 46-47 26.51885727861258 31.0 11.0 37.0 11.0 38.0 48-49 26.48892320484647 31.0 11.0 37.0 11.0 38.0 50-51 26.436271307240006 31.0 11.0 37.0 11.0 38.0 52-53 26.42483815406545 31.0 11.0 37.0 11.0 38.0 54-55 26.429322325830015 31.0 11.0 37.0 11.0 38.0 56-57 26.34804300053454 31.0 11.0 37.0 11.0 38.0 58-59 26.310714497832155 31.0 11.0 37.0 11.0 38.0 60-61 26.280780424066045 30.5 11.0 37.0 11.0 38.0 62-63 26.230533943101502 30.0 11.0 37.0 11.0 38.0 64-65 26.191720615311517 30.0 11.0 37.0 11.0 38.0 66-67 26.05300825562749 28.0 11.0 37.0 11.0 38.0 68-69 25.8744728870939 27.0 11.0 37.0 11.0 38.0 70-71 25.887034507335038 27.0 11.0 37.0 11.0 38.0 72-73 25.871711112430955 27.5 11.0 37.0 11.0 38.0 74-75 25.81145691037596 27.5 11.0 37.0 11.0 38.0 76 24.71336936508879 26.0 11.0 36.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 23.0 14 92.0 15 311.0 16 686.0 17 1259.0 18 1617.0 19 1553.0 20 1102.0 21 833.0 22 538.0 23 372.0 24 321.0 25 338.0 26 281.0 27 275.0 28 283.0 29 340.0 30 369.0 31 454.0 32 459.0 33 528.0 34 695.0 35 790.0 36 1182.0 37 2133.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.90241729524262 15.483756013541605 13.007067767416999 32.60675892379878 2 21.446813565362 17.586268337589832 31.5673813624755 29.399536734572667 3 18.37619528419552 16.84979509413791 28.407673576052737 36.36633604561383 4 14.848250876046801 17.63378274039318 29.090693116350895 38.427273267209124 5 15.174912395319831 25.610263111005523 36.229732137554194 22.985092356120447 6 28.003801152224266 25.277662291382075 22.456494624933182 24.262041931460473 7 24.37488863811843 23.20484646908594 24.523371146878898 27.896893745916728 8 22.480251826334857 27.302963710874863 22.076379402506387 28.140405060283896 9 20.502464809645424 14.509710756072936 22.89006355051375 42.09776088376789 10-11 23.041515709449424 20.677674169982776 26.682306824256102 29.598503296311694 12-13 22.468373225634018 18.729583655045438 27.005998693353924 31.79604442596662 14-15 21.990259547425314 20.56779711350003 23.890835659559304 33.551107679515354 16-17 23.21672506978678 21.32208825800321 24.410524440220943 31.050662231989072 18-19 21.241907703272556 21.470570766763675 26.0468016867613 31.24071984320247 20-21 22.438676723881926 21.515115519391816 25.663716814159294 30.382490942566964 22-23 23.056363960325474 21.07857694363604 25.13214943279682 30.73290966324167 24-25 22.18031715863871 21.506206568866187 24.79360931282295 31.51986695967215 26-27 22.233770861792483 21.856625289540894 25.63698996258241 30.272613886084223 28-29 21.987289897250104 21.286452455900694 26.296252301478884 30.430005345370315 30-31 21.529963770267862 21.096394844687296 26.343766704282235 31.029874680762603 32-33 21.660628377977073 21.319118607827996 25.84189582467185 31.178357189523076 34-35 22.590128882817602 20.89742828294827 25.54790045732613 30.964542376908 36-37 22.964304804893985 19.97683672863337 25.663716814159294 31.395141652313356 38-39 22.221892261091643 19.31163508938647 27.876106194690266 30.590366454831617 40-41 22.04668290075429 19.73035576409099 28.78481914830433 29.438142186850392 42-43 20.52028271069668 19.252242085882283 28.683851042347214 31.543624161073826 44-45 19.77490051671913 18.6553424006652 30.617093306408506 30.952663776207164 46-47 20.79646017699115 20.490586208944585 29.114450317752567 29.598503296311694 48-49 20.024351131436717 20.852883530320128 28.615549088317394 30.507216249925754 50-51 20.398527053513096 21.090455544336876 27.305933361050066 31.205084041099955 52-53 19.281938587634375 22.00510779830136 28.282948268693946 30.430005345370315 54-55 19.53732850270238 20.28864999703035 28.0453762546772 32.12864524559007 56-57 20.048108332838392 21.325057908178415 27.84047039258775 30.786363366395435 58-59 20.529191661222306 20.84100492961929 27.356417414028627 31.27338599512977 60-61 19.96198847775732 20.52028271069668 27.19308665439211 32.32464215715389 62-63 20.410405654213935 20.122349587218626 27.15448120211439 32.31276355645305 64-65 20.760824374888635 19.855081071449785 26.726851576884243 32.65724297677733 66-67 20.547009562273562 22.15062065688662 24.918334620181742 32.38403516065807 68-69 21.02809289065748 22.780186494031003 25.06681712894221 31.124903486369305 70-71 19.97683672863337 23.287996673991803 26.017105185009203 30.71806141236562 72-73 20.131258537744255 21.82395913761359 26.049771336936512 31.995010987705648 74-75 22.343647918275227 21.283482805725484 26.09431608956465 30.278553186434635 76 21.179545049593155 20.05701728336402 25.438023400843377 33.325414266199445 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 4.0 16 7.0 17 6.0 18 8.0 19 10.0 20 15.5 21 21.0 22 24.5 23 35.5 24 56.0 25 69.0 26 72.0 27 81.0 28 110.0 29 133.0 30 147.5 31 179.5 32 231.0 33 265.0 34 302.0 35 363.5 36 408.0 37 428.0 38 447.0 39 518.0 40 608.5 41 618.5 42 590.0 43 630.0 44 673.0 45 660.5 46 645.0 47 638.0 48 633.5 49 620.5 50 605.0 51 573.0 52 528.0 53 495.5 54 476.0 55 468.5 56 426.5 57 381.0 58 370.0 59 386.5 60 361.5 61 358.0 62 396.0 63 388.5 64 370.0 65 363.5 66 385.5 67 403.0 68 407.0 69 380.0 70 362.5 71 376.0 72 354.0 73 332.5 74 308.5 75 284.0 76 260.0 77 220.5 78 182.0 79 159.0 80 142.5 81 103.5 82 69.5 83 58.0 84 47.0 85 35.5 86 23.5 87 12.0 88 8.5 89 4.5 90 3.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 16837.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.8794322028865 #Duplication Level Percentage of deduplicated Percentage of total 1 91.77955461574044 82.49094256696561 2 6.006740236569088 10.797648037061235 3 1.612370316526796 4.347567856506504 4 0.4097006541994317 1.4729464869038427 5 0.17180995176105202 0.7721090455544336 6 0.013216150135465538 0.07127160420502465 7 0.0 0.0 8 0.006608075067732769 0.047514402803349766 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005939300350418721 0.0 2 0.0 0.0 0.0 0.005939300350418721 0.0 3 0.0 0.0 0.0 0.005939300350418721 0.0 4 0.0 0.0 0.0 0.011878600700837441 0.0 5 0.0 0.0 0.0 0.011878600700837441 0.0 6 0.0 0.0 0.0 0.011878600700837441 0.0 7 0.0 0.0 0.0 0.017817901051256163 0.0 8 0.0 0.0 0.0 0.017817901051256163 0.0 9 0.0 0.0 0.0 0.017817901051256163 0.0 10 0.0 0.0 0.0 0.023757201401674883 0.0 11 0.0 0.0 0.0 0.023757201401674883 0.0 12 0.0 0.0 0.0 0.023757201401674883 0.0 13 0.0 0.0 0.0 0.023757201401674883 0.0 14 0.0 0.0 0.0 0.023757201401674883 0.0 15 0.0 0.0 0.0 0.023757201401674883 0.0 16 0.0 0.0 0.0 0.023757201401674883 0.0 17 0.0 0.0 0.0 0.023757201401674883 0.0 18 0.0 0.0 0.0 0.047514402803349766 0.0 19 0.0 0.0 0.0 0.047514402803349766 0.0 20 0.0 0.0 0.0 0.047514402803349766 0.0 21 0.0 0.0 0.0 0.047514402803349766 0.0 22 0.0 0.0 0.0 0.059393003504187206 0.0 23 0.0 0.0 0.0 0.06533230385460592 0.0 24 0.0 0.0 0.0 0.09502880560669953 0.0 25 0.0 0.0 0.0 0.09502880560669953 0.0 26 0.0 0.0 0.0 0.09502880560669953 0.0 27 0.0 0.0 0.0 0.12472530735879313 0.0 28 0.0 0.0 0.0 0.15442180911088674 0.0 29 0.0 0.0 0.0 0.1722397101621429 0.0 30 0.0 0.0 0.0 0.2256934133159114 0.0 31 0.0 0.0 0.0 0.255389915068005 0.0 32 0.0 0.0 0.0 0.3266615192730296 0.0 33 0.0 0.0 0.0 0.3801152224267981 0.0 34 0.0 0.0 0.0 0.4810833283839164 0.0 35 0.0 0.0 0.0 0.593930035041872 0.0 36 0.0 0.0 0.0 0.7958662469561085 0.0 37 0.0 0.0 0.0 1.1641028686820694 0.0 38 0.0 0.0 0.0 1.5264001900576112 0.0 39 0.0 0.0 0.0 1.847122408980222 0.0 40 0.0 0.0 0.0 2.185662528954089 0.0 41 0.0 0.0 0.0 2.5420205499792123 0.0 42 0.0 0.0 0.0 2.8568034685514045 0.0 43 0.0 0.0 0.0 3.254736592029459 0.0 44 0.0 0.0 0.0 3.640791114806676 0.0 45 0.0 0.0 0.0 4.13375304389143 0.0 46 0.0 0.0 0.0 4.6504721743778585 0.0 47 0.0 0.0 0.0 5.161252004513869 0.0 48 0.0 0.0 0.0 5.565124428342341 0.0 49 0.0 0.0 0.0 5.957118251469977 0.0 50 0.0 0.0 0.0 6.3134762724951 0.0 51 0.0 0.0 0.0 6.782681000178179 0.0 52 0.0 0.0 0.0 7.168735522955396 0.0 53 0.0 0.0 0.0 7.560729346083032 0.0 54 0.0 0.0 0.0 7.923026667458573 0.0 55 0.0 0.0 0.0 8.30908119023579 0.0 56 0.0 0.0 0.0 8.611985508107145 0.0 57 0.0 0.0 0.0 8.903011225277663 0.0 58 0.0 0.0 0.0 9.253429945952368 0.0 59 0.0 0.0 0.0 9.586030765575815 0.0 60 0.0 0.0 0.0 9.835481380293402 0.0 61 0.0 0.0 0.0 10.144324998515176 0.0 62 0.0 0.0 0.0 10.429411415335274 0.0 63 0.0 0.0 0.0 10.744194333907465 0.0 64 0.0 0.0 0.0 11.09461305458217 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACAAGA 15 0.0021868346 70.00001 7 AGAGGCT 15 0.0021868346 70.00001 11 CCAGAAG 15 0.0021868346 70.00001 61 GCACCCT 15 0.0021868346 70.00001 13 GTCGATG 20 0.0068339882 52.5 40 GCCGACG 95 0.0069262027 18.421051 69 >>END_MODULE