##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781208_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15509 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.2707460184409 34.0 34.0 34.0 32.0 34.0 2 33.22296730930427 34.0 34.0 34.0 32.0 34.0 3 33.22690050938165 34.0 34.0 34.0 32.0 34.0 4 33.37107485975885 34.0 34.0 34.0 33.0 34.0 5 33.44058288735573 34.0 34.0 34.0 34.0 34.0 6 36.89992907344123 38.0 37.0 38.0 35.0 38.0 7 36.63040815010639 38.0 37.0 38.0 34.0 38.0 8 36.481011025855956 38.0 37.0 38.0 34.0 38.0 9 36.570958798117225 38.0 37.0 38.0 34.0 38.0 10-11 36.36975304661809 38.0 37.0 38.0 34.0 38.0 12-13 36.21455284028629 38.0 37.0 38.0 33.5 38.0 14-15 36.20839512541105 38.0 37.0 38.0 33.0 38.0 16-17 35.89164356180282 38.0 36.0 38.0 31.0 38.0 18-19 35.70655748275195 38.0 36.0 38.0 31.0 38.0 20-21 35.73147849635696 38.0 36.0 38.0 31.0 38.0 22-23 36.09833000193436 38.0 36.0 38.0 32.5 38.0 24-25 35.8262299310078 38.0 36.0 38.0 31.0 38.0 26-27 35.50896253788123 38.0 35.0 38.0 31.0 38.0 28-29 35.71984009284931 38.0 36.0 38.0 31.0 38.0 30-31 35.3207492423754 38.0 35.0 38.0 31.0 38.0 32-33 35.65903668837449 38.0 35.5 38.0 31.5 38.0 34-35 35.30350119285576 38.0 36.0 38.0 29.0 38.0 36-37 35.10323038235863 37.5 35.5 38.0 27.0 38.0 38-39 31.71219936810884 36.0 29.0 38.0 11.0 38.0 40-41 34.13527629118576 37.0 34.0 38.0 25.0 38.0 42-43 35.35598684634728 37.0 35.0 38.0 30.5 38.0 44-45 35.36062931201238 38.0 35.5 38.0 31.0 38.0 46-47 35.098426719969055 38.0 35.5 38.0 27.0 38.0 48-49 35.032593977690375 38.0 35.0 38.0 27.0 38.0 50-51 34.45573537945709 37.0 34.0 38.0 25.0 38.0 52-53 34.38142368947063 37.0 34.0 38.0 25.0 38.0 54-55 34.48597588497002 37.0 34.0 38.0 26.0 38.0 56-57 34.5258881939519 37.0 34.0 38.0 26.5 38.0 58-59 33.91833773937714 37.0 34.0 38.0 24.0 38.0 60-61 33.76968212005932 37.0 34.0 38.0 23.5 38.0 62-63 33.947546585853374 37.0 34.0 38.0 23.5 38.0 64-65 33.911212844155 37.0 34.0 38.0 23.5 38.0 66-67 33.14320717003031 37.0 32.0 38.0 21.5 38.0 68-69 31.8151718357083 36.5 29.5 38.0 11.0 38.0 70-71 28.860983944806243 33.5 18.0 38.0 10.5 38.0 72-73 26.44493519891676 30.0 11.0 38.0 11.0 38.0 74-75 26.51395963634019 30.5 11.0 38.0 11.0 38.0 76 25.874073118834225 27.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 2.0 22 6.0 23 22.0 24 53.0 25 88.0 26 196.0 27 281.0 28 448.0 29 580.0 30 819.0 31 989.0 32 1258.0 33 1592.0 34 1959.0 35 2409.0 36 1576.0 37 3231.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.45089947772261 8.195241472693276 9.665355599974209 58.68850344960991 2 12.992455993294216 8.865819846540719 58.79811722225804 19.34360693790702 3 12.934425172480497 10.11025855954607 57.95344638596944 19.001869882003998 4 10.129602166483977 48.28164291701593 20.916886968856794 20.671867947643303 5 11.2902185827584 19.19530595138307 58.02437294474176 11.490102521116771 6 19.64020891095493 57.18614997743246 11.702882197433748 11.470758914178864 7 17.3576632922819 17.77032690695725 10.980720871751885 53.891288929008965 8 15.120252756463989 58.70784705654781 9.014120833064672 17.157779353923527 9 12.99890386227352 12.379908440260493 8.994777226126766 65.62641047133923 10-11 16.345347862531433 34.199497066219614 31.484944225933333 17.970210845315624 12-13 15.513572764201431 10.02643626281514 34.7153265845638 39.74466438841963 14-15 14.981623573408989 9.42356051325037 12.979560255335612 62.61525565800503 16-17 38.62273518602102 31.06905667676833 9.510606744470952 20.7976013927397 18-19 39.1256689664066 13.601779611838289 9.92004642465665 37.35250499709846 20-21 16.60971049068283 10.477787091366302 9.826552324456767 63.085950093494105 22-23 15.884325230511315 33.33225868850345 9.571861499774323 41.211554581210905 24-25 38.7033335482623 32.155522599780774 9.871687407311883 19.269456444645044 26-27 39.88974144045393 34.9861370816945 9.678251337932814 15.445870139918757 28-29 37.404087948932876 14.755948159133405 10.065123476690955 37.774840415242764 30-31 19.11793152363144 53.91063253594687 10.126378231994327 16.845057708427362 32-33 15.065445870139918 37.871558449932294 31.091624218195886 15.971371461731898 34-35 38.0101876329873 11.577148752337353 14.375523889354568 36.037139725320785 36-37 16.290540976207364 30.695080275968795 10.851763492165839 42.162615255658004 38-39 15.042878328712362 14.73338061770585 31.052937004320075 39.17080404926172 40-41 14.884905538719453 10.290798890966535 35.443935779224965 39.38035979108904 42-43 38.00051582951834 9.549293958346766 33.25488426075182 19.19530595138307 44-45 15.245986201560385 32.326391127732286 36.13063382552066 16.296988845186668 46-47 36.86569088916114 11.209620220517118 15.70378489909085 36.2209039912309 48-49 36.25959120510671 9.542846089367464 11.999484170481656 42.19807853504417 50-51 16.774131149655037 10.007092655877232 34.78947707782578 38.42929911664195 52-53 13.447030756335032 9.626668386098395 57.03140112192921 19.894899735637374 54-55 13.52440518408666 9.952285769553162 37.85543877748404 38.667870268876136 56-57 36.41756399509962 10.071571345670256 16.126120317235156 37.38474434199497 58-59 14.588303565671545 11.038751692565608 54.594106647752916 19.778838094009927 60-61 36.394996453672064 31.84602488877426 15.929460313366434 15.829518344187246 62-63 14.469017989554454 58.31130311432071 10.809852343800374 16.409826552324457 64-65 13.008575665742473 59.87813527629119 10.597072667483397 16.516216390482946 66-67 13.218131407569796 59.587981172222584 10.44232381198014 16.75156360822748 68-69 13.733960925913985 58.20491327616223 11.090334644400025 16.97079115352376 70-71 14.65923012444387 48.12689406151267 15.071893739119222 22.141982074924236 72-73 17.88638854858469 33.65142820297892 20.19794957766458 28.26423367077181 74-75 18.476964245413804 29.99967759615695 22.52635651416965 28.9970016442596 76 19.16951447546586 29.84718550519053 21.600361080662843 29.382938938680763 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.5 16 5.5 17 8.0 18 6.0 19 4.0 20 6.5 21 9.0 22 12.0 23 21.0 24 25.0 25 23.0 26 28.5 27 31.5 28 36.0 29 43.0 30 50.5 31 63.5 32 73.0 33 77.0 34 85.0 35 114.0 36 122.5 37 110.0 38 124.5 39 156.5 40 527.5 41 1314.0 42 1747.0 43 1988.5 44 2047.5 45 1508.5 46 1152.0 47 877.5 48 470.5 49 275.0 50 212.0 51 183.0 52 138.5 53 131.5 54 140.0 55 146.5 56 152.5 57 154.5 58 157.0 59 181.0 60 207.5 61 226.5 62 243.0 63 257.5 64 261.0 65 276.0 66 304.0 67 306.0 68 307.5 69 315.5 70 334.0 71 346.0 72 329.0 73 321.0 74 296.0 75 262.0 76 248.0 77 206.5 78 172.0 79 165.0 80 135.5 81 87.0 82 65.5 83 63.0 84 49.5 85 25.0 86 13.0 87 12.0 88 6.0 89 1.0 90 1.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0032239344896511702 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 15509.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.27338964472242 #Duplication Level Percentage of deduplicated Percentage of total 1 75.39225104066603 30.36301502353472 2 17.034902337495996 13.72106518795538 3 4.755043227665706 5.745051260558386 4 1.392891450528338 2.2438584047972143 5 0.48030739673390976 0.9671803468953512 6 0.19212295869356388 0.46424656650976853 7 0.09606147934678194 0.2708104971306983 8 0.09606147934678194 0.30949771100651235 9 0.04803073967339097 0.1740924624411632 >10 0.3682356708293308 3.14011219292024 >50 0.04803073967339097 1.6893416725772132 >100 0.08005123278898495 8.640144432265135 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.016010246557796988 32.27158424140821 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGT 5005 32.27158424140821 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG 450 2.901541040686053 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCACCTCGTATGCCGT 340 2.1922754529627957 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCC 229 1.4765619962602359 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCAACTCGTATGCCGT 215 1.3862918305500032 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCAGCTCGTATGCCGT 106 0.6834741118060481 No Hit ATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTCTT 98 0.6318911599716294 RNA PCR Primer, Index 20 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATATCGTATGCCGT 84 0.5416209942613966 No Hit TCTTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCC 80 0.5158295183441872 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAAATGCCACCTCGTATGCCG 48 0.30949771100651235 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATTTCGTATGCCGT 42 0.2708104971306983 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAAATGCCAACTCGTATGCCG 33 0.21277967631697725 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGC 32 0.2063318073376749 No Hit CTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTC 30 0.1934360693790702 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCCCGTATGCCGT 29 0.18698820039976788 No Hit CTTTACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTC 24 0.15474885550325618 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCC 23 0.14830098652395385 No Hit CTTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG 22 0.1418531175446515 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGA 21 0.13540524856534916 No Hit TATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTCT 20 0.1289573795860468 No Hit CCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG 20 0.1289573795860468 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAAATGCCACCTCGTATGCC 17 0.10961377264813979 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0064478689793023404 0.0 2 0.0 0.0 0.0 0.0064478689793023404 0.0 3 0.0 0.0 0.0 0.0064478689793023404 0.0 4 0.0 0.0 0.0 0.0064478689793023404 0.0 5 0.0 0.0 0.0 0.0064478689793023404 0.0 6 0.0 0.0 0.0 0.0064478689793023404 0.0 7 0.0 0.0 0.0 0.012895737958604681 0.0 8 0.0 0.0 0.0 0.012895737958604681 0.0 9 0.0 0.0 0.0 0.012895737958604681 0.0 10 0.0 0.0 0.0 0.019343606937907022 0.0 11 0.0 0.0 0.0 0.019343606937907022 0.0 12 0.0 0.0 0.0 0.019343606937907022 0.0 13 0.0 0.0 0.0 0.019343606937907022 0.0 14 0.0 0.0 0.0 0.019343606937907022 0.0 15 0.0 0.0 0.0 0.019343606937907022 0.0 16 0.0 0.0 0.0 0.019343606937907022 0.0 17 0.0 0.0 0.0 0.019343606937907022 0.0 18 0.0 0.0 0.0 0.0322393448965117 0.0 19 0.0 0.0 0.0 0.0322393448965117 0.0 20 0.0 0.0 0.0 0.0322393448965117 0.0 21 0.0 0.0 0.0 0.038687213875814044 0.0 22 0.0 0.0 0.0 0.038687213875814044 0.0 23 0.0 0.0 0.0 0.038687213875814044 0.0 24 0.0 0.0 0.0 0.04513508285511639 0.0 25 0.0 0.0 0.0 0.04513508285511639 0.0 26 0.0 0.0 0.0 0.04513508285511639 0.0 27 0.0 0.0 0.0 0.09027016571023277 0.0 28 0.0 0.0 0.0 0.12250951060674448 0.0 29 0.0 0.0 0.0 0.1418531175446515 0.0 30 0.0 0.0 0.0 0.1934360693790702 0.0 31 0.0 0.0 0.0 0.21922754529627958 0.0 32 0.0 0.0 0.0 0.2901541040686053 0.0 33 0.0 0.0 0.0 0.36752853182023343 0.0 34 0.0 0.0 0.0 0.4835901734476755 0.0 35 0.0 0.0 0.0 0.60609968405442 0.0 36 0.0 0.0 0.0 0.8188793603713973 0.0 37 0.0 0.0 0.0 1.250886581984654 0.0 38 0.0 0.0 0.0 1.605519375846283 0.0 39 0.0 0.0 0.0 1.9666000386872138 0.0 40 0.0 0.0 0.0 2.3212328325488425 0.0 41 0.0 0.0 0.0 2.682313495389774 0.0 42 0.0 0.0 0.0 2.972467599458379 0.0 43 0.0 0.0 0.0 3.3593397382165193 0.0 44 0.0 0.0 0.0 3.7720033528918693 0.0 45 0.0 0.0 0.0 4.249145657360242 0.0 46 0.0 0.0 0.0 4.823005996518151 0.0 47 0.0 0.0 0.0 5.300148300986524 0.0 48 0.0 0.0 0.0 5.654781094848152 0.0 49 0.0 0.0 0.0 6.009413888709782 0.0 50 0.0 0.0 0.0 6.383390289509317 0.0 51 0.0 0.0 0.0 6.873428331936295 0.0 52 0.0 0.0 0.0 7.260300470694435 0.0 53 0.0 0.0 0.0 7.621381133535366 0.0 54 0.0 0.0 0.0 7.995357534334902 0.0 55 0.0 0.0 0.0 8.37578180411374 0.0 56 0.0 0.0 0.0 8.672383777161649 0.0 57 0.0 0.0 0.0 8.956090012250952 0.0 58 0.0 0.0 0.0 9.278483461216068 0.0 59 0.0 0.0 0.0 9.652459862015604 0.0 60 0.0 0.0 0.0 9.858791669353279 0.0 61 0.0 0.0 0.0 10.13605003546328 0.0 62 0.0 0.0 0.0 10.38751692565607 0.0 63 0.0 0.0 0.0 10.71635824360049 0.0 64 0.0 0.0 0.0 11.096782513379328 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCGTA 30 9.592077E-8 70.00001 38 TCGGCAT 15 0.0021836122 70.00001 36 TGCCATA 30 9.592077E-8 70.00001 33 CCATATC 30 9.592077E-8 70.00001 35 GCCATAT 30 9.592077E-8 70.00001 34 ATATCGT 30 9.592077E-8 70.00001 37 CATATCG 30 9.592077E-8 70.00001 36 ATCGTAT 40 1.200533E-10 70.0 39 GAAAAAA 745 0.0 61.54362 60 TGAAAAA 740 0.0 61.48649 59 CTTGAAA 725 0.0 61.310345 57 TTCTGCT 720 0.0 61.249996 52 TTGAAAA 720 0.0 61.249996 58 TCTCGTA 585 0.0 61.025642 38 CCATCTC 580 0.0 60.948277 35 TGCCATC 580 0.0 60.948277 33 GTCTTCT 730 0.0 60.890415 49 GCTTGAA 730 0.0 60.890415 56 GCCATCT 575 0.0 60.869564 34 GCCGTCT 755 0.0 60.728477 46 >>END_MODULE