##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781207_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 179241 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.127855791922606 34.0 32.0 34.0 21.0 34.0 2 31.19984266992485 34.0 32.0 34.0 23.0 34.0 3 31.147628053849285 34.0 33.0 34.0 23.0 34.0 4 31.307569138757316 34.0 33.0 34.0 23.0 34.0 5 31.256565183189114 34.0 33.0 34.0 23.0 34.0 6 33.98633125233624 37.0 34.0 38.0 23.0 38.0 7 33.92967568804013 37.0 34.0 38.0 24.0 38.0 8 33.85801239671727 37.0 34.0 38.0 23.0 38.0 9 34.11038211123571 37.0 34.0 38.0 24.0 38.0 10-11 33.94757616839897 37.0 34.0 38.0 23.0 38.0 12-13 33.91676848488906 37.0 34.0 38.0 23.0 38.0 14-15 33.78368230482981 37.0 34.0 38.0 22.5 38.0 16-17 33.76740254740824 37.0 34.0 38.0 22.5 38.0 18-19 33.80007085432462 37.0 34.0 38.0 23.0 38.0 20-21 33.72791381436167 37.0 34.0 38.0 22.5 38.0 22-23 33.77686187869963 37.0 34.0 38.0 22.5 38.0 24-25 33.7780948555297 37.0 34.0 38.0 22.5 38.0 26-27 33.679057804854914 37.0 34.0 38.0 22.0 38.0 28-29 33.76562561021195 37.0 34.0 38.0 22.5 38.0 30-31 33.832513208473515 37.0 34.0 38.0 23.0 38.0 32-33 33.78577167054413 37.0 34.0 38.0 22.5 38.0 34-35 33.813326750018135 37.0 34.0 38.0 23.0 38.0 36-37 33.65674706121925 37.0 34.0 38.0 22.0 38.0 38-39 33.68068968595355 37.0 34.0 38.0 22.0 38.0 40-41 33.67761561249937 37.0 34.0 38.0 22.0 38.0 42-43 33.759485831924614 37.0 34.0 38.0 22.5 38.0 44-45 33.78326387377888 37.0 34.0 38.0 22.5 38.0 46-47 33.792725994610606 37.0 34.0 38.0 22.5 38.0 48-49 33.761656094308776 37.0 34.0 38.0 22.5 38.0 50-51 33.62694361223158 37.0 34.0 38.0 22.0 38.0 52-53 33.7038958720382 37.0 34.0 38.0 22.5 38.0 54-55 33.66817580799036 37.0 34.0 38.0 22.0 38.0 56-57 33.641404589351765 37.0 34.0 38.0 22.0 38.0 58-59 33.637647078514405 37.0 34.0 38.0 22.0 38.0 60-61 33.61519685786176 37.0 34.0 38.0 22.0 38.0 62-63 33.55891788151149 37.0 34.0 38.0 22.0 38.0 64-65 33.58717592515106 37.0 34.0 38.0 22.0 38.0 66-67 33.47875765031438 37.0 34.0 38.0 22.0 38.0 68-69 33.2305052973371 37.0 33.5 38.0 21.0 38.0 70-71 33.37989355114064 37.0 34.0 38.0 21.5 38.0 72-73 33.31806338951468 37.0 33.5 38.0 21.0 38.0 74-75 33.29739010605833 37.0 33.0 38.0 21.0 38.0 76 31.847852890800652 36.0 30.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 27.0 14 115.0 15 392.0 16 857.0 17 1496.0 18 1981.0 19 1996.0 20 1868.0 21 1705.0 22 1701.0 23 1874.0 24 2167.0 25 2474.0 26 2941.0 27 3578.0 28 4187.0 29 4990.0 30 5910.0 31 7094.0 32 8600.0 33 10500.0 34 13341.0 35 17480.0 36 26310.0 37 55655.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.95679002014048 18.56439095965767 10.172337802176958 26.306481218024896 2 23.294335559386525 19.92903409376203 31.06320540501336 25.71342494183809 3 19.930149909897846 21.533577697067077 28.42485815187373 30.111414241161345 4 14.542431698104785 15.503149391043344 36.06261960154205 33.89179930930981 5 14.50616767369073 33.2658264571164 34.912213165514586 17.315792703678287 6 31.223325020503122 35.09688073599232 17.992535190051385 15.687259053453174 7 30.191753002940175 27.2900731417477 22.20027783821782 20.317896017094302 8 26.827009445383588 32.3547625822217 19.576994102911723 21.241233869482986 9 25.108652596225195 15.708459560033697 21.31431982637901 37.8685680173621 10-11 26.40913630252007 23.69184505777138 26.601335631914573 23.297683007793974 12-13 26.00883726379567 22.022863072622894 25.98540512494351 25.982894538637925 14-15 23.94959858514514 23.304656858642833 23.407590897171964 29.33815365904006 16-17 24.344597497224406 26.129345406463923 24.876283885941277 24.649773210370395 18-19 23.77720499216139 25.412991447269317 25.996284332267727 24.813519228301562 20-21 23.691008195669518 25.751920598523775 25.886655396923697 24.67041580888301 22-23 24.17359867441043 25.311731132943915 26.094197198185682 24.420472994459974 24-25 23.74261469195106 25.467945391958313 25.836164716777972 24.953275199312657 26-27 23.102415184025975 25.74438883960701 26.23451107726469 24.918684899102324 28-29 23.815979602881036 25.268493257681 27.045430453969793 23.870096685468166 30-31 23.759630888022272 25.346321433154245 26.10172895710245 24.792318721721035 32-33 23.370768964689997 25.881634224312517 25.873544557327843 24.87405225366964 34-35 24.18140938736115 24.91561640472883 26.41276270496148 24.490211502948544 36-37 24.322002220474108 24.66232614189834 25.96085716995554 25.054814467672017 38-39 23.44636550789161 25.39625420523206 26.982665796330078 24.174714490546247 40-41 23.658091619662912 24.387277464419412 27.2998365329361 24.654794382981574 42-43 23.203396544317428 24.27123258629443 27.090342053436434 25.43502881595171 44-45 22.54478607015136 24.438883960700956 27.69567230711723 25.32065766203045 46-47 22.80923449434002 24.05560111804777 27.81255404734408 25.32261034026813 48-49 21.996920347465146 23.863401788653267 28.734218175529037 25.405459688352554 50-51 21.638743367867843 24.22241563035243 28.34340357395908 25.795437427820644 52-53 21.551709709274107 24.04862726719891 28.804793546119473 25.59486947740751 54-55 20.700063043611674 24.854525471292842 28.62905250472827 25.816358980367216 56-57 20.67718881282742 25.06262518062274 28.579677640718366 25.68050836583148 58-59 20.915694511858334 24.79957152660385 28.064728494038754 26.220005467499064 60-61 20.47801563258406 24.355755658582577 28.412584174379745 26.753644534453613 62-63 20.629208718987286 24.055880072081724 28.456101003676615 26.85881020525438 64-65 21.448217762677064 24.214883871435664 27.530252564982344 26.806645800904928 66-67 21.44710194654125 23.93592983748138 26.891168873193077 27.725799342784295 68-69 21.435943785183078 24.295501587248452 26.53578143393532 27.732773193633154 70-71 21.884780825815522 24.159372018678763 26.408020486384252 27.547826669121463 72-73 21.950892931862686 23.707745437706777 26.36422470305343 27.977136927377106 74-75 22.43934144531664 24.067596141507803 26.090849749778233 27.402212663397325 76 23.063919527340285 23.919192595444123 25.354690054172874 27.662197823042717 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 0.0 11 0.5 12 1.0 13 1.0 14 3.0 15 6.5 16 9.0 17 10.0 18 25.0 19 42.5 20 79.5 21 114.0 22 142.5 23 203.0 24 298.0 25 361.0 26 452.0 27 644.0 28 905.0 29 1065.0 30 1227.5 31 1582.5 32 2188.5 33 2602.0 34 2954.5 35 3738.5 36 4769.0 37 5368.0 38 5917.5 39 7189.0 40 8766.0 41 9819.5 42 10018.0 43 10375.0 44 10949.0 45 11088.0 46 11010.0 47 10902.0 48 10217.5 49 9159.5 50 8678.0 51 8150.0 52 6882.0 53 5602.5 54 5063.0 55 4711.0 56 3970.0 57 3263.5 58 2946.0 59 2788.5 60 2482.5 61 2293.0 62 2252.0 63 2220.0 64 2123.5 65 2075.0 66 2031.5 67 1972.0 68 1940.0 69 1890.0 70 1847.0 71 1822.0 72 1820.0 73 1748.0 74 1578.0 75 1478.0 76 1411.0 77 1240.0 78 1015.0 79 894.0 80 798.5 81 601.0 82 417.5 83 336.0 84 276.5 85 170.0 86 102.0 87 81.0 88 59.0 89 33.0 90 22.5 91 8.5 92 1.0 93 1.5 94 3.0 95 3.0 96 2.0 97 1.5 98 0.5 99 2.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 179241.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.45619026896748 #Duplication Level Percentage of deduplicated Percentage of total 1 71.97068802314327 37.753081047305024 2 13.620071684587815 14.289141435274297 3 5.6167108048030805 8.838937519875476 4 2.541931229592759 5.333601129205929 5 1.4166746434383077 3.7156677322710765 6 0.9412590536358125 2.962491840594507 7 0.6732395264988353 2.4720906489028738 8 0.5009412590536358 2.102197599879492 9 0.40415642980972744 1.9080455922473094 >10 2.290928815289876 19.874917011174897 >50 0.023398530146878954 0.7498284432691181 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 5.5790806790857E-4 0.0 10 0.0 0.0 0.0 5.5790806790857E-4 0.0 11 0.0 0.0 0.0 5.5790806790857E-4 0.0 12 0.0 0.0 0.0 5.5790806790857E-4 0.0 13 0.0 0.0 0.0 5.5790806790857E-4 0.0 14 0.0 0.0 0.0 5.5790806790857E-4 0.0 15 0.0 0.0 0.0 5.5790806790857E-4 0.0 16 0.0 0.0 0.0 5.5790806790857E-4 0.0 17 0.0 0.0 0.0 5.5790806790857E-4 0.0 18 0.0 0.0 0.0 5.5790806790857E-4 0.0 19 0.0 0.0 0.0 0.00278954033954285 0.0 20 0.0 0.0 0.0 0.00334744840745142 0.0 21 0.0 0.0 0.0 0.00390535647535999 0.0 22 0.0 0.0 0.0 0.0055790806790857 0.0 23 0.0 0.0 0.0 0.0055790806790857 0.0 24 0.0 0.0 0.0 0.007252804882811411 0.0 25 0.0 0.0 0.0 0.00892652908653712 0.0 26 0.0 0.0 0.0 0.01060025329026283 0.0 27 0.0 0.0 0.0 0.024547954987977082 0.0 28 0.0 0.0 0.0 0.04240101316105132 0.0 29 0.0 0.0 0.0 0.07141223269229696 0.0 30 0.0 0.0 0.0 0.08982319893327978 0.0 31 0.0 0.0 0.0 0.11046579744589687 0.0 32 0.0 0.0 0.0 0.14617191379204536 0.0 33 0.0 0.0 0.0 0.20084690444708522 0.0 34 0.0 0.0 0.0 0.2901121953124564 0.0 35 0.0 0.0 0.0 0.4184310509314275 0.0 36 0.0 0.0 0.0 0.6187200473106041 0.0 37 0.0 0.0 0.0 0.9607176929385576 0.0 38 0.0 0.0 0.0 1.3490217082029223 0.0 39 0.0 0.0 0.0 1.8405387160303726 0.0 40 0.0 0.0 0.0 2.3973309678031254 0.0 41 0.0 0.0 0.0 3.0472938669166094 0.0 42 0.0 0.0 0.0 3.7787113439447446 0.0 43 0.0 0.0 0.0 4.63119487170904 0.0 44 0.0 0.0 0.0 5.564575069320077 0.0 45 0.0 0.0 0.0 6.651379985605971 0.0 46 0.0 0.0 0.0 7.700247153274083 0.0 47 0.0 0.0 0.0 8.76696737911527 0.0 48 0.0 0.0 0.0 9.775107257826056 0.0 49 0.0 0.0 0.0 10.792731573691286 0.0 50 0.0 0.0 0.0 11.685942390412908 0.0 51 0.0 0.0 0.0 12.591427184628516 0.0 52 0.0 0.0 0.0 13.431078826830914 0.0 53 0.0 0.0 0.0 14.336005712978615 0.0 54 0.0 0.0 0.0 15.36869354667738 0.0 55 0.0 0.0 0.0 16.42090816275294 0.0 56 0.0 0.0 0.0 17.39334192511758 0.0 57 0.0 0.0 0.0 18.284321109567564 0.0 58 0.0 0.0 0.0 19.152983971301207 0.0 59 0.0 0.0 0.0 19.960834853632818 0.0 60 0.0 0.0 0.0 20.78821251834123 0.0 61 0.0 0.0 0.0 21.557567743987146 0.0 62 0.0 0.0 0.0 22.356492097232216 0.0 63 0.0 0.0 0.0 23.208417716928604 0.0 64 0.0 0.0 0.0 23.996741816883414 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGAAGC 15 0.0022218325 70.0 66 CTCGTAA 20 0.006942512 52.500004 30 CAACCGG 20 0.006942512 52.500004 18 GTGCTAT 20 0.006942512 52.500004 27 CCTGGTA 20 0.006942512 52.500004 2 TAATCGA 20 0.006942512 52.500004 21 GCAACCG 30 5.8660546E-4 46.666664 17 GGGTAAT 40 4.5792196E-5 43.750004 1 AGTGCTA 35 0.0012529349 40.0 26 CTTGTAC 50 1.704739E-4 35.000004 3 CCGTGCG 50 1.704739E-4 35.000004 9 TAACAAG 40 0.0024140058 35.000004 31 AGTAAAT 40 0.0024140058 35.000004 2 TTGTACT 55 2.9834532E-4 31.818184 4 GGCATAA 55 2.9834532E-4 31.818184 21 TCTGCCG 45 0.004298856 31.111113 64 GAGTTGG 45 0.004298856 31.111113 7 CGAAGTT 45 0.004298856 31.111113 33 GCTCGGA 60 4.9677206E-4 29.166666 11 TGCCAAA 50 0.007194392 28.000002 15 >>END_MODULE