SRR1781207_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781207_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	162042
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT	5028	3.102899248343022	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG	580	0.3579318942002691	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTACCTCGTATGCCGT	322	0.1987139136767011	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC	300	0.1851371866553116	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTAACTCGTATGCCGT	181	0.11169943594870466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATG	15	0.0022214467	70.0	40
CTCGAAA	15	0.0022214467	70.0	57
TACCTCG	65	0.0	59.230774	36
CGTATGC	770	0.0	53.636364	41
CGTCTTC	755	0.0	53.311256	48
CTCGTAT	775	0.0	53.290325	39
TCGTATG	775	0.0	53.290325	40
CTTGAAA	730	0.0	53.21918	57
CCGTCTT	760	0.0	52.96053	47
TATGCCG	775	0.0	52.83871	43
TTGGACG	20	0.006941316	52.5	49
CGCATGC	20	0.006941316	52.5	41
TCGTAAC	20	0.006941316	52.5	17
CGTAACA	20	0.006941316	52.5	18
GTAAGTG	20	0.006941316	52.5	27
AGTGTAC	20	0.006941316	52.5	30
CTGCTTG	760	0.0	52.03948	54
GCCGTCT	775	0.0	51.935486	46
GTATGCC	800	0.0	51.187504	42
TCTCGTA	685	0.0	51.094887	38