##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781207_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 162042 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.25977215783562 34.0 34.0 34.0 32.0 34.0 2 33.29220202169808 34.0 34.0 34.0 33.0 34.0 3 33.31688080867923 34.0 34.0 34.0 33.0 34.0 4 33.37539650214142 34.0 34.0 34.0 33.0 34.0 5 33.38567161600079 34.0 34.0 34.0 33.0 34.0 6 36.81073425408228 38.0 37.0 38.0 34.0 38.0 7 36.68751928512361 38.0 37.0 38.0 34.0 38.0 8 36.48327594080547 38.0 37.0 38.0 34.0 38.0 9 36.44585354414288 38.0 37.0 38.0 34.0 38.0 10-11 36.36288739956308 38.0 37.0 38.0 34.0 38.0 12-13 36.29361832117599 38.0 37.0 38.0 34.0 38.0 14-15 36.325656311326696 38.0 37.0 38.0 34.0 38.0 16-17 36.222908258352774 38.0 37.0 38.0 34.0 38.0 18-19 36.209618493970694 38.0 37.0 38.0 33.5 38.0 20-21 36.16534910702163 38.0 37.0 38.0 33.0 38.0 22-23 36.24749756236037 38.0 37.0 38.0 34.0 38.0 24-25 36.241141185618545 38.0 37.0 38.0 34.0 38.0 26-27 35.992214981301146 38.0 36.5 38.0 32.0 38.0 28-29 35.975657545574606 38.0 37.0 38.0 32.0 38.0 30-31 36.027844632872956 38.0 37.0 38.0 32.0 38.0 32-33 35.95257710963824 38.0 37.0 38.0 32.0 38.0 34-35 35.92926833783834 38.0 36.5 38.0 31.5 38.0 36-37 35.865565717530025 38.0 36.0 38.0 31.0 38.0 38-39 35.609110600955304 38.0 36.0 38.0 31.0 38.0 40-41 35.795003764456126 38.0 36.0 38.0 31.0 38.0 42-43 35.867771935671 38.0 36.0 38.0 31.5 38.0 44-45 35.844102146357116 38.0 36.0 38.0 31.0 38.0 46-47 35.83847706150257 38.0 36.0 38.0 31.0 38.0 48-49 35.80385949321781 38.0 36.0 38.0 31.0 38.0 50-51 35.70947346984116 38.0 36.0 38.0 31.0 38.0 52-53 35.743504770368176 38.0 36.0 38.0 31.0 38.0 54-55 35.754822823712374 38.0 36.0 38.0 31.0 38.0 56-57 35.72812604139668 38.0 36.0 38.0 31.0 38.0 58-59 35.66965971785093 38.0 36.0 38.0 31.0 38.0 60-61 35.66693511558732 38.0 36.0 38.0 31.0 38.0 62-63 35.63869552338282 38.0 36.0 38.0 31.0 38.0 64-65 35.594176201231775 38.0 36.0 38.0 31.0 38.0 66-67 35.525388479529994 38.0 36.0 38.0 31.0 38.0 68-69 35.382388516557434 38.0 36.0 38.0 31.0 38.0 70-71 35.09126954740129 38.0 36.0 38.0 28.0 38.0 72-73 34.861807432640916 38.0 36.0 38.0 27.0 38.0 74-75 34.889877315757644 38.0 36.0 38.0 27.0 38.0 76 33.94711864825169 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 2.0 21 12.0 22 29.0 23 50.0 24 123.0 25 292.0 26 562.0 27 980.0 28 1643.0 29 2470.0 30 3853.0 31 5447.0 32 7506.0 33 10251.0 34 13691.0 35 18878.0 36 26959.0 37 69292.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.807679490502466 18.216882042927143 10.33559200701053 29.639846459559866 2 22.209056911171178 18.820429271423457 33.67830562446773 25.292208192937633 3 19.805359104429716 20.983448735513015 29.91940361140939 29.29178854864788 4 14.357388825119413 18.9648362770146 34.168919169104306 32.508855728761674 5 14.26420310783624 33.10191185001419 36.69727601486035 15.936609027289222 6 31.085150763382334 38.464719023463054 16.060033818392764 14.390096394761853 7 29.183791856432283 27.21022944668666 20.593426395625826 23.01255230125523 8 25.60015304674097 35.72715715678651 18.148381283864676 20.524308512607842 9 23.824687426716533 15.177546562002444 19.623307537551995 41.37445847372903 10-11 25.512830007035213 25.26937460658348 26.51380506288493 22.703990323496377 12-13 25.01882228064329 21.502449982103407 26.448698485577815 27.03002925167549 14-15 22.855802816553734 22.377840313005272 22.215228150726354 32.55112871971464 16-17 25.483516619148123 27.233988718974096 23.26187037928438 24.020624282593403 18-19 25.41655866997445 24.973772231890496 24.154540180940746 25.45512891719431 20-21 22.941274484392935 24.847878944964886 23.999024944150282 28.211821626491897 22-23 23.52167956455734 26.551449624171514 24.242480344602015 25.684390466669132 24-25 25.305784919959024 26.724552893694227 24.19033337036077 23.779328815985977 26-27 24.592698189358313 27.075079300428285 24.579430024314682 23.75279248589872 28-29 23.0585280359413 24.942607472136853 25.04258155293072 26.956282938991126 30-31 23.039397193320248 28.639797089643427 24.60689204033522 23.7139136767011 32-33 24.76919564063638 27.409560484318877 24.38904728403747 23.43219659100727 34-35 23.492983300625763 26.884696560151074 26.57582602041446 23.046494118808706 36-37 23.191209686377608 26.115142987620494 26.845817750953454 23.847829575048443 38-39 22.654620407054963 25.120647733303713 26.98405351698942 25.240678342651908 40-41 22.759222917515213 23.76359215512028 27.651781636859578 25.825403290504934 42-43 24.647005097443873 23.70681675121265 27.33180286592365 24.31437528541983 44-45 21.93628812283235 25.887424248034463 28.05970057145678 24.116587057676405 46-47 24.199590229693534 22.98539884721245 26.696165191740413 26.118845731353602 48-49 23.299514940570962 22.922760765727404 26.905987336616434 26.8717369570852 50-51 21.18709964083386 23.293652262993543 28.904543266560523 26.614704829612073 52-53 20.44716801816813 23.18442132286691 31.433208674294317 24.93520198467064 54-55 19.69952234605843 23.986991027017687 29.500067883635104 26.813418743288775 56-57 21.620320657607287 23.87868577282433 27.220720553930462 27.280273015637924 58-59 19.89576776391306 23.734895891188703 30.59638859061231 25.772947754285923 60-61 21.530837684057218 25.56435985732094 26.81033312351119 26.09446933511065 62-63 18.968539020747706 27.806371187716767 26.37649498278224 26.848594808753283 64-65 19.475197788227742 28.297293294331098 25.26628898680589 26.961219930635266 66-67 19.771725848854 28.21614149418052 24.42700040730181 27.58513224966367 68-69 19.51407659742536 28.297293294331098 24.06999419903482 28.118635909208724 70-71 20.037089149726615 27.565075721109345 23.941323854309378 28.45651127485467 72-73 20.05190012465904 26.01547746880438 24.280742029844117 29.651880376692464 74-75 20.472470100344356 26.645869589365724 23.710519494945757 29.17114081534417 76 20.753261500104912 27.219486306019427 23.292726577060268 28.734525616815393 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 1.5 12 2.0 13 2.5 14 2.0 15 10.5 16 18.0 17 16.0 18 18.5 19 33.5 20 61.5 21 77.0 22 104.5 23 163.5 24 272.0 25 349.0 26 429.0 27 541.5 28 726.5 29 879.0 30 985.5 31 1247.5 32 1815.5 33 2228.0 34 2500.0 35 3257.5 36 4092.5 37 4442.0 38 5201.5 39 7236.0 40 9324.0 41 10145.0 42 10153.0 43 10073.0 44 9925.5 45 9787.5 46 9717.0 47 9449.0 48 8748.0 49 7969.5 50 7624.0 51 7177.5 52 6083.5 53 4927.5 54 4419.0 55 4118.0 56 3446.0 57 2769.0 58 2463.0 59 2269.5 60 2010.5 61 1885.0 62 1825.0 63 1839.5 64 1832.0 65 1807.0 66 1857.5 67 1911.0 68 1875.0 69 1797.5 70 1726.5 71 1697.0 72 1686.5 73 1603.0 74 1423.5 75 1317.0 76 1306.0 77 1196.0 78 961.0 79 825.0 80 750.5 81 569.5 82 387.5 83 312.0 84 242.5 85 155.5 86 98.5 87 59.0 88 44.5 89 26.0 90 15.5 91 6.5 92 4.0 93 3.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 162042.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.65339850162304 #Duplication Level Percentage of deduplicated Percentage of total 1 59.38277823871044 24.734945261105146 2 19.82932321915373 16.519174041297934 3 8.319011496977598 10.395453030695744 4 3.7276283038994906 6.210735488330186 5 1.9941922484295365 4.153244220634156 6 1.26081545573071 3.1510349168734035 7 0.920054521749437 2.682637834635465 8 0.6770771601280077 2.25620518137273 9 0.5704041720990873 2.138334505868849 >10 3.2801943818892974 22.98293035139038 >50 0.028149816285409503 0.6905617062243122 >100 0.007407846390897238 0.6239123190284 >500 0.0014815692781794476 0.3579318942002691 >1k 0.0 0.0 >5k 0.0014815692781794476 3.102899248343022 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT 5028 3.102899248343022 No Hit TCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG 580 0.3579318942002691 No Hit CTTATACACATCTCCGAGCCCACGAGACCAAGAATTACCTCGTATGCCGT 322 0.1987139136767011 No Hit CTCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC 300 0.1851371866553116 No Hit CTTATACACATCTCCGAGCCCACGAGACCAAGAATTAACTCGTATGCCGT 181 0.11169943594870466 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 6.171239555177052E-4 0.0 10 0.0 0.0 0.0 6.171239555177052E-4 0.0 11 0.0 0.0 0.0 6.171239555177052E-4 0.0 12 0.0 0.0 0.0 6.171239555177052E-4 0.0 13 0.0 0.0 0.0 6.171239555177052E-4 0.0 14 0.0 0.0 0.0 6.171239555177052E-4 0.0 15 0.0 0.0 0.0 6.171239555177052E-4 0.0 16 0.0 0.0 0.0 6.171239555177052E-4 0.0 17 0.0 0.0 0.0 6.171239555177052E-4 0.0 18 0.0 0.0 0.0 0.0012342479110354105 0.0 19 0.0 0.0 0.0 0.0030856197775885265 0.0 20 0.0 0.0 6.171239555177052E-4 0.0030856197775885265 0.0 21 0.0 0.0 6.171239555177052E-4 0.0030856197775885265 0.0 22 0.0 0.0 6.171239555177052E-4 0.004319867688623937 0.0 23 0.0 0.0 6.171239555177052E-4 0.006171239555177053 0.0 24 0.0 0.0 6.171239555177052E-4 0.006788363510694759 0.0 25 0.0 0.0 6.171239555177052E-4 0.008022611421730169 0.0 26 0.0 0.0 6.171239555177052E-4 0.009873983288283284 0.0 27 0.0 0.0 6.171239555177052E-4 0.0234507103096728 0.0 28 0.0 0.0 6.171239555177052E-4 0.04443292479727478 0.0 29 0.0 0.0 6.171239555177052E-4 0.07405487466212464 0.0 30 0.0 0.0 6.171239555177052E-4 0.09812270892731514 0.0 31 0.0 0.0 6.171239555177052E-4 0.1166364275928463 0.0 32 0.0 0.0 6.171239555177052E-4 0.15674948470149713 0.0 33 0.0 0.0 6.171239555177052E-4 0.2104392688315375 0.0 34 0.0 0.0 6.171239555177052E-4 0.30856197775885263 0.0 35 0.0 0.0 6.171239555177052E-4 0.4449463719282655 0.0 36 0.0 0.0 6.171239555177052E-4 0.6634082521815332 0.0 37 0.0 0.0 6.171239555177052E-4 1.030597005714568 0.0 38 0.0 0.0 6.171239555177052E-4 1.432344700756594 0.0 39 0.0 0.0 6.171239555177052E-4 1.9550486910800904 0.0 40 0.0 0.0 6.171239555177052E-4 2.5413164488219104 0.0 41 0.0 0.0 6.171239555177052E-4 3.220769923846904 0.0 42 0.0 0.0 6.171239555177052E-4 3.978598141222646 0.0 43 0.0 0.0 6.171239555177052E-4 4.887621727700226 0.0 44 0.0 0.0 6.171239555177052E-4 5.862060453462682 0.0 45 0.0 0.0 6.171239555177052E-4 6.990780168104566 0.0 46 0.0 0.0 6.171239555177052E-4 8.087409437059527 0.0 47 0.0 0.0 6.171239555177052E-4 9.216129151701411 0.0 48 0.0 0.0 6.171239555177052E-4 10.271411115636687 0.0 49 0.0 0.0 6.171239555177052E-4 11.339035558682317 0.0 50 0.0 0.0 6.171239555177052E-4 12.270892731514053 0.0 51 0.0 0.0 6.171239555177052E-4 13.216326631367176 0.0 52 0.0 0.0 6.171239555177052E-4 14.07351180558127 0.0 53 0.0 0.0 6.171239555177052E-4 15.008454598190593 0.0 54 0.0 0.0 6.171239555177052E-4 16.056948198615174 0.0 55 0.0 0.0 6.171239555177052E-4 17.12765826143839 0.0 56 0.0 0.0 6.171239555177052E-4 18.12863331728811 0.0 57 0.0 0.0 6.171239555177052E-4 19.084558324385036 0.0 58 0.0 0.0 6.171239555177052E-4 19.975068192197085 0.0 59 0.0 0.0 6.171239555177052E-4 20.86125819232051 0.0 60 0.0 0.0 6.171239555177052E-4 21.714740622801497 0.0 61 0.0 0.0 6.171239555177052E-4 22.520087384752102 0.0 62 0.0 0.0 6.171239555177052E-4 23.339627997679614 0.0 63 0.0 0.0 6.171239555177052E-4 24.217795386381308 0.0 64 0.0 0.0 6.171239555177052E-4 25.04659285864159 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCATG 15 0.0022214467 70.0 40 CTCGAAA 15 0.0022214467 70.0 57 TACCTCG 65 0.0 59.230774 36 CGTATGC 770 0.0 53.636364 41 CGTCTTC 755 0.0 53.311256 48 CTCGTAT 775 0.0 53.290325 39 TCGTATG 775 0.0 53.290325 40 CTTGAAA 730 0.0 53.21918 57 CCGTCTT 760 0.0 52.96053 47 TATGCCG 775 0.0 52.83871 43 TTGGACG 20 0.006941316 52.5 49 CGCATGC 20 0.006941316 52.5 41 TCGTAAC 20 0.006941316 52.5 17 CGTAACA 20 0.006941316 52.5 18 GTAAGTG 20 0.006941316 52.5 27 AGTGTAC 20 0.006941316 52.5 30 CTGCTTG 760 0.0 52.03948 54 GCCGTCT 775 0.0 51.935486 46 GTATGCC 800 0.0 51.187504 42 TCTCGTA 685 0.0 51.094887 38 >>END_MODULE