##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781206_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 176372 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.0381012859184 34.0 32.0 34.0 21.0 34.0 2 31.18612364774454 34.0 32.0 34.0 23.0 34.0 3 31.18154242169959 34.0 33.0 34.0 23.0 34.0 4 31.363260608259814 34.0 33.0 34.0 23.0 34.0 5 31.36528473907423 34.0 33.0 34.0 23.0 34.0 6 34.07446193273309 37.0 34.0 38.0 24.0 38.0 7 33.984719796793144 37.0 34.0 38.0 24.0 38.0 8 33.70485111015354 37.0 34.0 38.0 23.0 38.0 9 34.09914272106683 37.0 34.0 38.0 24.0 38.0 10-11 33.960075862381785 37.0 34.0 38.0 23.0 38.0 12-13 33.91582280634114 37.0 34.0 38.0 23.0 38.0 14-15 33.81668575510852 37.0 34.0 38.0 22.5 38.0 16-17 33.786527906924 37.0 34.0 38.0 22.5 38.0 18-19 33.822069262694754 37.0 34.0 38.0 23.0 38.0 20-21 33.745373415281335 37.0 34.0 38.0 22.5 38.0 22-23 33.799123443630506 37.0 34.0 38.0 22.5 38.0 24-25 33.7927023563831 37.0 34.0 38.0 22.5 38.0 26-27 33.7225551674869 37.0 34.0 38.0 22.0 38.0 28-29 33.81779420769736 37.0 34.0 38.0 23.0 38.0 30-31 33.883961172975305 37.0 34.0 38.0 23.0 38.0 32-33 33.81589481323566 37.0 34.0 38.0 22.5 38.0 34-35 33.82276948722019 37.0 34.0 38.0 23.0 38.0 36-37 33.6903845281564 37.0 34.0 38.0 22.5 38.0 38-39 33.716899507858386 37.0 34.0 38.0 22.0 38.0 40-41 33.68675016442519 37.0 34.0 38.0 22.0 38.0 42-43 33.77528179076044 37.0 34.0 38.0 23.0 38.0 44-45 33.80058909577484 37.0 34.0 38.0 23.0 38.0 46-47 33.79552309890459 37.0 34.0 38.0 23.0 38.0 48-49 33.7512927222008 37.0 34.0 38.0 22.5 38.0 50-51 33.634822987775834 37.0 34.0 38.0 22.0 38.0 52-53 33.711258022815414 37.0 34.0 38.0 22.5 38.0 54-55 33.682597010863404 37.0 34.0 38.0 22.0 38.0 56-57 33.66532669584741 37.0 34.0 38.0 22.0 38.0 58-59 33.64474803256753 37.0 34.0 38.0 22.0 38.0 60-61 33.627338806613295 37.0 34.0 38.0 22.0 38.0 62-63 33.60345179506952 37.0 34.0 38.0 22.0 38.0 64-65 33.618133830766794 37.0 34.0 38.0 22.0 38.0 66-67 33.484898396570884 37.0 34.0 38.0 22.0 38.0 68-69 33.24556335472751 37.0 33.5 38.0 21.0 38.0 70-71 33.3804855646021 37.0 34.0 38.0 21.0 38.0 72-73 33.312025151384574 37.0 33.5 38.0 21.0 38.0 74-75 33.26952974395029 37.0 33.0 38.0 21.0 38.0 76 31.810757943437732 36.0 29.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 3.0 13 15.0 14 110.0 15 310.0 16 767.0 17 1343.0 18 1746.0 19 1959.0 20 1872.0 21 1722.0 22 1736.0 23 1907.0 24 2174.0 25 2499.0 26 2962.0 27 3547.0 28 4126.0 29 4930.0 30 6062.0 31 6959.0 32 8452.0 33 10340.0 34 13056.0 35 17369.0 36 25782.0 37 54622.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.9237974281632 18.22568208105595 10.001020570158529 26.84949992062232 2 23.26729866418706 18.984305898895517 31.776018869208265 25.97237656770916 3 20.207856122286984 21.128070215226906 28.48297915768943 30.18109450479668 4 14.456943278978523 15.830744109042252 36.34647222915202 33.36584038282721 5 14.396843036309617 33.45372281314494 35.30945955140272 16.83997459914272 6 31.25496110493729 35.57537477604155 18.01363028145057 15.15603383757059 7 30.111355543963896 28.010681967659266 22.011997369196926 19.865965119179915 8 26.628943369695868 32.62139115052276 19.775247771755154 20.974417708026216 9 25.07498398262753 15.447550901225258 21.386735914634492 38.090729201512715 10-11 26.202004853378085 23.6656045177239 27.095570725511987 23.036819903386025 12-13 25.68519946476765 22.011430385775522 26.433050597600527 25.8703195518563 14-15 23.94604570466317 23.40911088242715 23.413363270142852 29.23148014276683 16-17 24.480359694282537 25.587678316286034 24.857403669516703 25.074558319914726 18-19 23.79856213004332 25.54487106796997 26.037579661170707 24.618987140816003 20-21 23.808200848207196 25.710146735309458 25.790091397727533 24.691561018755813 22-23 24.24647903295308 25.096670673349514 26.373233846642325 24.28361644705509 24-25 23.68459846234096 25.44394801895993 26.13453382623092 24.73691969246819 26-27 23.10655886421881 25.705894359648923 26.64085002154537 24.546696754586897 28-29 23.855827455605198 25.38016238405189 27.017893996779534 23.74611616356338 30-31 24.06561132152496 25.227360351983307 26.253600344725918 24.453427981765813 32-33 23.424069580205476 25.618862404463293 26.275712698160707 24.681355317170524 34-35 24.292688181797566 25.048477082530106 26.34516816728279 24.313666568389543 36-37 24.310264667861112 24.769521239198966 26.05770757263058 24.862506520309346 38-39 23.689984804844304 25.365137323384662 26.87643163313905 24.06844623863198 40-41 23.783820561086795 24.465901617036717 27.43434331980133 24.31593450207516 42-43 23.29479736012519 24.742306034971538 27.086782482480213 24.87611412242306 44-45 22.90981561699136 24.35533984986279 27.41648334202708 25.318361191118772 46-47 22.901027373959586 24.04434944322228 27.933572222348218 25.121050960469915 48-49 22.302859864377567 24.21444446964371 28.563774295239607 24.91892137073912 50-51 22.186344771278886 24.00834599596308 28.348604086816504 25.456705145941534 52-53 21.83651600027215 24.038963100718934 28.72479758691856 25.399723312090355 54-55 20.939831719320527 24.771789172884585 28.75569818338512 25.532680924409775 56-57 20.68043680402785 24.80467421132606 28.551867643390104 25.96302134125598 58-59 21.26187830267843 24.704885129158825 27.97326106184655 26.059975506316196 60-61 20.853650239267004 24.438402921098586 28.16631891683487 26.541627922799538 62-63 20.688941555348922 23.966672714489828 28.494318826117528 26.85006690404372 64-65 21.60518676433901 24.18354387317715 27.571836799491983 26.63943256299186 66-67 21.595831537885832 24.082053840745697 27.095287233801287 27.226827387567187 68-69 21.29192842401288 24.19460004989454 26.798754904406596 27.71471662168598 70-71 21.983648198126687 24.24846347492799 26.379187172567075 27.388701154378246 72-73 21.7826525752387 23.788923411879438 26.430499172204204 27.99792484067766 74-75 21.84927312725376 23.908273422085138 26.2986755267276 27.943777923933506 76 22.228018052752137 23.986233642528294 26.240559726033613 27.54518857868596 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 0.5 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 1.5 15 5.5 16 14.0 17 18.0 18 18.5 19 31.0 20 45.0 21 47.0 22 79.5 23 154.0 24 249.5 25 303.0 26 401.5 27 557.5 28 736.0 29 857.0 30 1070.0 31 1419.0 32 2032.5 33 2510.0 34 2802.0 35 3518.0 36 4550.5 37 5159.0 38 5745.5 39 7213.0 40 8734.0 41 9914.5 42 10455.0 43 10545.5 44 10891.5 45 11171.5 46 11196.0 47 11113.5 48 10401.5 49 9337.0 50 8902.0 51 8282.0 52 6911.5 53 5642.5 54 5124.0 55 4799.0 56 4124.0 57 3332.5 58 2891.0 59 2668.0 60 2370.0 61 2149.5 62 2004.0 63 2000.0 64 1959.0 65 1859.0 66 1804.5 67 1813.0 68 1825.0 69 1785.5 70 1657.5 71 1581.0 72 1605.0 73 1574.5 74 1448.5 75 1377.0 76 1281.5 77 1083.5 78 872.0 79 763.0 80 714.5 81 575.5 82 421.0 83 357.0 84 313.0 85 206.0 86 128.0 87 113.0 88 94.5 89 57.5 90 28.5 91 17.5 92 17.0 93 10.5 94 3.5 95 3.0 96 3.0 97 3.0 98 2.5 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 5.669834214047582E-4 10-11 0.0 12-13 0.0 14-15 2.834917107023791E-4 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 176372.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.437302973261055 #Duplication Level Percentage of deduplicated Percentage of total 1 73.09112553873966 37.59610368992811 2 12.843773767925839 13.212981652416483 3 5.178514346182251 7.991064341278661 4 2.436040167105742 5.012133445218062 5 1.3458846353104574 3.4614337876760484 6 0.8509606375591098 2.6262672079468397 7 0.6856185447691273 2.468645816796317 8 0.5301969775465437 2.1817522055655094 9 0.44973049238875235 2.0819631233982716 >10 2.5628024382447285 22.518880547932778 >50 0.023147892990597545 0.7280067130837095 >100 0.002204561237199766 0.12076746875921349 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0011339668428095163 0.0 2 0.0 0.0 0.0 0.0011339668428095163 0.0 3 0.0 0.0 0.0 0.0011339668428095163 0.0 4 0.0 0.0 0.0 0.0011339668428095163 0.0 5 0.0 0.0 0.0 0.0022679336856190327 0.0 6 0.0 0.0 0.0 0.0022679336856190327 0.0 7 0.0 0.0 0.0 0.0022679336856190327 0.0 8 0.0 0.0 0.0 0.0022679336856190327 0.0 9 0.0 0.0 0.0 0.0028349171070237906 0.0 10 0.0 0.0 0.0 0.0028349171070237906 0.0 11 0.0 0.0 0.0 0.0028349171070237906 0.0 12 0.0 0.0 0.0 0.0034019005284285486 0.0 13 0.0 0.0 0.0 0.003968883949833307 0.0 14 0.0 0.0 0.0 0.003968883949833307 0.0 15 0.0 0.0 0.0 0.003968883949833307 0.0 16 0.0 0.0 0.0 0.003968883949833307 0.0 17 0.0 0.0 0.0 0.003968883949833307 0.0 18 0.0 0.0 0.0 0.003968883949833307 0.0 19 0.0 0.0 0.0 0.003968883949833307 0.0 20 0.0 0.0 0.0 0.003968883949833307 0.0 21 0.0 0.0 0.0 0.003968883949833307 0.0 22 0.0 0.0 0.0 0.005669834214047581 0.0 23 0.0 0.0 0.0 0.005669834214047581 0.0 24 0.0 0.0 0.0 0.008504751321071372 0.0 25 0.0 0.0 0.0 0.010205701585285646 0.0 26 0.0 0.0 0.0 0.011339668428095162 0.0 27 0.0 0.0 0.0 0.02381330369899984 0.0 28 0.0 0.0 0.0 0.03401900528428549 0.0 29 0.0 0.0 0.0 0.058399292404690085 0.0 30 0.0 0.0 0.0 0.08051164583947565 0.0 31 0.0 0.0 0.0 0.10319098269566598 0.0 32 0.0 0.0 0.0 0.1462817227224276 0.0 33 0.0 0.0 0.0 0.19050642959199873 0.0 34 0.0 0.0 0.0 0.28122377701676005 0.0 35 0.0 0.0 0.0 0.39121856076928313 0.0 36 0.0 0.0 0.0 0.564715487719139 0.0 37 0.0 0.0 0.0 0.8487741818429229 0.0 38 0.0 0.0 0.0 1.2184473725988252 0.0 39 0.0 0.0 0.0 1.6493547728664413 0.0 40 0.0 0.0 0.0 2.1534030344952715 0.0 41 0.0 0.0 0.0 2.7203864559000297 0.0 42 0.0 0.0 0.0 3.323089832853287 0.0 43 0.0 0.0 0.0 4.090218402013925 0.0 44 0.0 0.0 0.0 4.946930351756515 0.0 45 0.0 0.0 0.0 5.943120223164675 0.0 46 0.0 0.0 0.0 6.91606377429524 0.0 47 0.0 0.0 0.0 7.939468849930828 0.0 48 0.0 0.0 0.0 8.93339078765337 0.0 49 0.0 0.0 0.0 9.84396616242941 0.0 50 0.0 0.0 0.0 10.705213979543238 0.0 51 0.0 0.0 0.0 11.576100514820947 0.0 52 0.0 0.0 0.0 12.43451341482775 0.0 53 0.0 0.0 0.0 13.284421563513483 0.0 54 0.0 0.0 0.0 14.208604540403238 0.0 55 0.0 0.0 0.0 15.102737395958542 0.0 56 0.0 0.0 0.0 16.03826004127639 0.0 57 0.0 0.0 0.0 16.927290046039055 0.0 58 0.0 0.0 0.0 17.819154967908737 0.0 59 0.0 0.0 0.0 18.610663824189782 0.0 60 0.0 0.0 0.0 19.420316149955774 0.0 61 0.0 0.0 0.0 20.18857868595922 0.0 62 0.0 0.0 0.0 20.94266663642755 0.0 63 0.0 0.0 0.0 21.72793867507314 0.0 64 0.0 0.0 0.0 22.47578980790602 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCATAG 15 0.0022217738 70.0 9 ACTCGAC 15 0.0022217738 70.0 25 AGAGCCG 15 0.0022217738 70.0 5 CTAGATC 35 0.0012528807 40.0 21 ACAGACG 35 0.0012528807 40.0 8 TTTACGC 45 0.0042986735 31.111109 2 TAGATCA 45 0.0042986735 31.111109 22 GCAATTT 45 0.0042986735 31.111109 14 ACGGTTA 45 0.0042986735 31.111109 50 ATTTAAG 50 0.0071940855 28.000002 18 AAATACG 50 0.0071940855 28.000002 13 GGCAATT 50 0.0071940855 28.000002 13 CTACGGA 50 0.0071940855 28.000002 24 TAGCTCG 50 0.0071940855 28.000002 10 TGGAGGC 65 7.932501E-4 26.923077 5 GAGCCGC 65 7.932501E-4 26.923077 6 TCTACGG 80 8.629896E-5 26.25 23 TCTATAC 80 8.629896E-5 26.25 3 TTTCGGG 70 0.0012224404 25.0 22 TTCCACC 70 0.0012224404 25.0 36 >>END_MODULE