SRR1781206_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781206_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	159665
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT	4255	2.6649547490057306	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCG	413	0.2586665831584881	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAATACAGACCTCGTATGCCGT	298	0.18664077913130617	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCC	276	0.17286192966523659	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAATACAGAACTCGTATGCCGT	252	0.1578304575204334	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTTGAAA	670	57.985073	57
ATCTCGT	625	57.68	37
TCGTATG	710	57.1831	40
CGTATGC	715	56.783215	41
TATGCCG	715	56.783215	43
TCTCGTA	635	56.771652	38
CCGTCTT	675	56.518517	47
CTCGTAT	720	56.388885	39
TTGAAAA	675	56.0	58
GTATGCC	730	55.616436	42
CGTCTTC	680	55.588234	48
AGATCTC	655	55.572517	35
ACAGATC	645	55.34884	33
GATCTCG	655	55.038166	36
CAGATCT	650	54.923077	34
ATGCCGT	735	54.7619	44
TGCCGTC	725	54.551723	45
CTGCTTG	720	54.444443	54
GCCGTCT	715	53.846153	46
TCTTCTG	705	53.120564	50