##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781205_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 420238 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.422348764271675 34.0 32.0 34.0 23.0 34.0 2 31.312922677149615 34.0 32.0 34.0 23.0 34.0 3 31.304993836825798 34.0 33.0 34.0 23.0 34.0 4 31.48966062088626 34.0 33.0 34.0 23.0 34.0 5 31.47509982438523 34.0 33.0 34.0 23.0 34.0 6 34.284303180578625 37.0 34.0 38.0 24.0 38.0 7 34.15273963801465 37.0 34.0 38.0 24.0 38.0 8 33.98313574688629 37.0 34.0 38.0 24.0 38.0 9 34.31300120407959 37.0 34.0 38.0 24.0 38.0 10-11 34.17164559130778 37.0 34.0 38.0 24.0 38.0 12-13 34.125552663014766 37.0 34.0 38.0 24.0 38.0 14-15 33.99591184043328 37.0 34.0 38.0 23.5 38.0 16-17 33.97183976698918 37.0 34.0 38.0 23.5 38.0 18-19 34.03830805400749 37.0 34.0 38.0 23.5 38.0 20-21 33.96571942565879 37.0 34.0 38.0 23.5 38.0 22-23 34.04290306921316 37.0 34.0 38.0 23.5 38.0 24-25 34.036951679762424 37.0 34.0 38.0 23.5 38.0 26-27 33.94955001689519 37.0 34.0 38.0 23.0 38.0 28-29 34.034805277009696 37.0 34.0 38.0 24.0 38.0 30-31 34.126099971920674 37.0 34.0 38.0 24.0 38.0 32-33 34.07370585239793 37.0 34.0 38.0 24.0 38.0 34-35 34.100853563932816 37.0 34.0 38.0 24.0 38.0 36-37 33.958226052855764 37.0 34.0 38.0 23.5 38.0 38-39 33.9697457155231 37.0 34.0 38.0 23.0 38.0 40-41 33.95778225672119 37.0 34.0 38.0 23.5 38.0 42-43 34.042636553572024 37.0 34.0 38.0 24.0 38.0 44-45 34.05365649941224 37.0 34.0 38.0 24.0 38.0 46-47 34.043045845449484 37.0 34.0 38.0 24.0 38.0 48-49 34.00914719754044 37.0 34.0 38.0 24.0 38.0 50-51 33.893989834331975 37.0 34.0 38.0 23.0 38.0 52-53 33.97482973933819 37.0 34.0 38.0 24.0 38.0 54-55 33.93570310157577 37.0 34.0 38.0 23.5 38.0 56-57 33.91456745939206 37.0 34.0 38.0 23.5 38.0 58-59 33.91556094403647 37.0 34.0 38.0 23.5 38.0 60-61 33.89808037350264 37.0 34.0 38.0 23.5 38.0 62-63 33.87139668473579 37.0 34.0 38.0 23.0 38.0 64-65 33.87847481665152 37.0 34.0 38.0 23.0 38.0 66-67 33.767137907566664 37.0 34.0 38.0 23.0 38.0 68-69 33.5707051718312 37.0 34.0 38.0 22.5 38.0 70-71 33.72366492321018 37.0 34.0 38.0 23.0 38.0 72-73 33.67811692421913 37.0 34.0 38.0 23.0 38.0 74-75 33.67253080397299 37.0 34.0 38.0 23.0 38.0 76 32.34293186242082 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 4.0 13 29.0 14 115.0 15 336.0 16 793.0 17 1594.0 18 2400.0 19 2853.0 20 3130.0 21 3588.0 22 4000.0 23 4706.0 24 5615.0 25 6536.0 26 7859.0 27 8968.0 28 10730.0 29 12636.0 30 14631.0 31 17798.0 32 20957.0 33 25252.0 34 31372.0 35 41020.0 36 60958.0 37 132356.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.0984584925685 18.37649141676859 9.075571461885884 24.449478628777026 2 23.889557821996107 20.54074119903483 30.533649979297444 25.036050999671616 3 19.487528495757168 22.060118313907832 30.212403447570185 28.239949742764814 4 14.062745396656181 16.957533588109595 37.352405065700864 31.627315949533358 5 13.778858646766832 33.67758270313489 36.126195156078225 16.417363494020055 6 29.107553338822285 37.44449573812935 19.2855001213598 14.162450801688568 7 28.80796120293738 29.746239035974853 22.30688324235314 19.13891651873462 8 25.648799013892127 34.45190582479452 20.316106587219622 19.583188574093725 9 24.909694030525557 16.690066105397417 21.87474716708151 36.52549269699551 10-11 25.01856091072202 24.664356864443484 28.174272674056127 22.14280955077837 12-13 25.39299159047968 23.107857928126442 27.010170427234094 24.488980054159786 14-15 23.45099681608993 24.256254788952926 24.383682579871408 27.909065815085736 16-17 23.530832528234 27.39090705742936 25.451291886978332 23.626968527358304 18-19 22.81361990110366 27.035156268590654 27.013025951960557 23.138197878345128 20-21 22.920107177361402 27.11856138664281 26.731875746600736 23.229455689395056 22-23 23.179959927469675 26.605399797257746 27.09571718883109 23.11892308644149 24-25 22.990543453947527 26.727235518920228 27.030159100319345 23.2520619268129 26-27 22.348407331083813 26.91320156673123 27.167343267386578 23.571047834798375 28-29 22.84384087112541 26.81099757756319 27.75974566793103 22.58541588338037 30-31 23.066571799789642 26.742227023734173 27.28239711782371 22.90880405865248 32-33 22.512362042461653 27.357711582484214 26.890952269904194 23.23897410514994 34-35 23.43065120241387 26.250362889600652 27.34367191924576 22.975313988739714 36-37 23.298940124405693 26.503433768483575 26.781966409510797 23.41565969759993 38-39 22.689642535896326 26.92343386366773 27.512623798894914 22.87429980154103 40-41 22.821710554495308 26.115796286866015 27.838510558302676 23.223982600335997 42-43 22.643835160075955 26.41074819507041 27.586391520995246 23.359025123858384 44-45 22.128056006358303 26.139949266844027 27.869326429309105 23.862668297488565 46-47 22.321517806576274 25.975280674284573 27.987949685654318 23.715251833484835 48-49 21.768140910626833 25.782532755248216 28.67351358039968 23.77581275372527 50-51 21.84690580099848 25.84666308139673 28.29551349473394 24.01091762287085 52-53 21.425596923648026 25.77610782461367 28.974771439041685 23.823523812696614 54-55 21.019517511505384 26.20610225634045 28.820930044403408 23.95345018775075 56-57 20.90349232336116 26.065472734368306 28.700777658268212 24.33025728400232 58-59 20.87272597475222 26.12324056777755 28.603400478303808 24.40063297916642 60-61 20.848785978338334 25.929984496788112 28.53221586467588 24.689013660197677 62-63 20.522277958099735 25.696989310768238 28.972767682921024 24.807965048211006 64-65 21.113850312681446 25.825131592724087 28.31646979316384 24.744548301430626 66-67 21.06908847755966 25.701004077465907 27.92510883752363 25.304798607450806 68-69 20.866489306009004 25.676048696446756 27.774393436069257 25.683068561474983 70-71 21.507702228869288 25.565070061905764 27.53586976826089 25.391357940964056 72-73 21.428554431319544 25.192986797894516 27.443032010584528 25.935426760201413 74-75 21.232304628102714 25.408519478294387 27.40679664094309 25.952379252659806 76 21.308877350453788 25.480323055030716 27.20886735611725 26.00193223839824 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 0.0 10 2.0 11 2.5 12 1.0 13 8.0 14 19.0 15 36.5 16 84.0 17 118.0 18 132.5 19 202.5 20 350.5 21 443.0 22 534.5 23 799.5 24 1257.5 25 1542.0 26 1856.0 27 2385.0 28 2980.5 29 3361.0 30 3903.0 31 4887.5 32 6506.0 33 7682.0 34 8509.0 35 10519.0 36 13033.0 37 14364.0 38 15525.0 39 18492.5 40 21758.5 41 24129.5 42 25041.0 43 25700.0 44 26779.5 45 26970.5 46 26741.0 47 26422.5 48 24707.5 49 22242.5 50 21174.0 51 19819.5 52 16703.0 53 13906.5 54 12872.0 55 11973.0 56 10106.5 57 8263.0 58 7387.0 59 6524.0 60 5148.0 61 4314.5 62 3994.0 63 3703.5 64 3218.0 65 2915.5 66 2741.5 67 2675.0 68 2555.5 69 2425.5 70 2319.0 71 2223.0 72 2101.0 73 1938.0 74 1796.0 75 1695.0 76 1564.0 77 1294.5 78 1089.0 79 1022.0 80 912.5 81 690.0 82 493.5 83 410.0 84 350.5 85 237.0 86 147.5 87 112.0 88 95.0 89 62.5 90 37.5 91 19.5 92 11.0 93 9.5 94 9.0 95 7.0 96 4.0 97 3.0 98 1.0 99 3.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 4.7592078774408785E-4 58-59 7.138811816161318E-4 60-61 5.949009846801099E-4 62-63 4.7592078774408785E-4 64-65 4.7592078774408785E-4 66-67 3.569405908080659E-4 68-69 4.7592078774408785E-4 70-71 5.949009846801099E-4 72-73 4.7592078774408785E-4 74-75 2.3796039387204393E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 420238.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.88877789802865 #Duplication Level Percentage of deduplicated Percentage of total 1 72.57477613222146 35.48092111327326 2 13.997877397611616 13.686782382713394 3 5.563188553277254 8.15932468758081 4 2.2997308981508486 4.4972413241972315 5 1.0563638216822064 2.5822168128867067 6 0.6728342050319578 1.9736425207202435 7 0.4693722212882902 1.6062923994647302 8 0.38138486286948686 1.4916351883597168 9 0.3137836861465086 1.3806450846037248 >10 2.5217211107347404 24.1135260932519 >50 0.13724510880969218 4.374228840541093 >100 0.011722002175900395 0.6535435524072029 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.7592078774408785E-4 0.0 3 0.0 0.0 0.0 4.7592078774408785E-4 0.0 4 0.0 0.0 0.0 0.0011898019693602196 0.0 5 0.0 0.0 0.0 0.0014277623632322637 0.0 6 0.0 0.0 0.0 0.0014277623632322637 0.0 7 0.0 0.0 0.0 0.0014277623632322637 0.0 8 0.0 0.0 0.0 0.0014277623632322637 0.0 9 0.0 0.0 0.0 0.0014277623632322637 0.0 10 0.0 0.0 0.0 0.0014277623632322637 0.0 11 0.0 0.0 0.0 0.0016657227571043075 0.0 12 0.0 0.0 0.0 0.0016657227571043075 0.0 13 0.0 0.0 0.0 0.0019036831509763514 0.0 14 0.0 0.0 0.0 0.0019036831509763514 0.0 15 0.0 0.0 4.7592078774408785E-4 0.0019036831509763514 0.0 16 0.0 0.0 4.7592078774408785E-4 0.0019036831509763514 0.0 17 0.0 0.0 4.7592078774408785E-4 0.0021416435448483955 0.0 18 0.0 0.0 4.7592078774408785E-4 0.0021416435448483955 0.0 19 0.0 0.0 4.7592078774408785E-4 0.0028555247264645273 0.0 20 0.0 0.0 4.7592078774408785E-4 0.003331445514208615 0.0 21 0.0 0.0 4.7592078774408785E-4 0.003331445514208615 0.0 22 0.0 0.0 4.7592078774408785E-4 0.004283287089696791 0.0 23 0.0 0.0 4.7592078774408785E-4 0.004283287089696791 0.0 24 0.0 0.0 4.7592078774408785E-4 0.0052351286651849665 0.0 25 0.0 0.0 4.7592078774408785E-4 0.006186970240673142 0.0 26 0.0 0.0 4.7592078774408785E-4 0.00666289102841723 0.0 27 0.0 0.0 4.7592078774408785E-4 0.011660059299730153 0.0 28 0.0 0.0 4.7592078774408785E-4 0.019512752297507603 0.0 29 0.0 0.0 4.7592078774408785E-4 0.031886692778853885 0.0 30 0.0 0.0 4.7592078774408785E-4 0.04545043522956039 0.0 31 0.0 0.0 4.7592078774408785E-4 0.06163174201285938 0.0 32 0.0 0.0 4.7592078774408785E-4 0.08661758336942399 0.0 33 0.0 0.0 4.7592078774408785E-4 0.11874223654214992 2.3796039387204393E-4 34 0.0 0.0 4.7592078774408785E-4 0.16871391925527915 2.3796039387204393E-4 35 0.0 0.0 4.7592078774408785E-4 0.22653829496618583 2.3796039387204393E-4 36 0.0 0.0 4.7592078774408785E-4 0.3326686306331174 2.3796039387204393E-4 37 0.0 0.0 4.7592078774408785E-4 0.5085213617045579 2.3796039387204393E-4 38 0.0 0.0 4.7592078774408785E-4 0.7455299140011137 2.3796039387204393E-4 39 0.0 0.0 4.7592078774408785E-4 1.012045555137803 2.3796039387204393E-4 40 0.0 0.0 4.7592078774408785E-4 1.33186432450183 2.3796039387204393E-4 41 0.0 0.0 4.7592078774408785E-4 1.6883289945221518 2.3796039387204393E-4 42 0.0 0.0 4.7592078774408785E-4 2.105235604585973 2.3796039387204393E-4 43 0.0 0.0 4.7592078774408785E-4 2.5878192833584777 2.3796039387204393E-4 44 0.0 0.0 4.7592078774408785E-4 3.162969555347208 2.3796039387204393E-4 45 0.0 0.0 4.7592078774408785E-4 3.8007034109242857 2.3796039387204393E-4 46 0.0 0.0 4.7592078774408785E-4 4.486981186851261 2.3796039387204393E-4 47 0.0 0.0 4.7592078774408785E-4 5.213712229736482 2.3796039387204393E-4 48 0.0 0.0 4.7592078774408785E-4 5.914505589689652 2.3796039387204393E-4 49 0.0 0.0 4.7592078774408785E-4 6.620534078308006 2.3796039387204393E-4 50 0.0 0.0 4.7592078774408785E-4 7.252556884432155 2.3796039387204393E-4 51 0.0 0.0 4.7592078774408785E-4 7.8650669382587965 2.3796039387204393E-4 52 0.0 0.0 4.7592078774408785E-4 8.477576992085437 2.3796039387204393E-4 53 0.0 0.0 4.7592078774408785E-4 9.119832095146084 2.3796039387204393E-4 54 0.0 0.0 4.7592078774408785E-4 9.799922900832385 2.3796039387204393E-4 55 0.0 0.0 4.7592078774408785E-4 10.521894735840167 2.3796039387204393E-4 56 0.0 0.0 4.7592078774408785E-4 11.212217838462966 2.3796039387204393E-4 57 0.0 0.0 4.7592078774408785E-4 11.896829891632837 2.3796039387204393E-4 58 0.0 0.0 4.7592078774408785E-4 12.571923529047826 2.3796039387204393E-4 59 0.0 0.0 4.7592078774408785E-4 13.229408097316282 2.3796039387204393E-4 60 0.0 0.0 4.7592078774408785E-4 13.879753853768579 2.3796039387204393E-4 61 0.0 0.0 4.7592078774408785E-4 14.465850303875422 2.3796039387204393E-4 62 0.0 0.0 4.7592078774408785E-4 15.05218471437614 2.3796039387204393E-4 63 0.0 0.0 4.7592078774408785E-4 15.6449440555114 2.3796039387204393E-4 64 0.0 0.0 4.7592078774408785E-4 16.27101785178875 2.3796039387204393E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 20 7.922774E-5 70.0 1 GCGGTTT 60 1.2147135E-5 35.000004 40 CAACGTC 90 1.7542152E-7 31.111109 16 TAGCGCT 45 0.0043053823 31.111109 32 AACGTCA 100 4.4133958E-7 27.999998 17 TTAGCGC 50 0.0072052474 27.999998 31 TCAACGT 100 4.4133958E-7 27.999998 15 ACGTCAA 90 6.163351E-6 27.222221 18 GTACAAG 65 7.950888E-4 26.923077 1 CGTACTA 65 7.950888E-4 26.923077 36 GCACTTA 65 7.950888E-4 26.923077 1 TTTGCGG 80 8.657832E-5 26.25 37 ACTCGAT 95 9.379344E-6 25.789473 6 CTTAGCG 70 0.0012252597 25.0 30 CCGTGCG 85 1.3070901E-4 24.705883 9 CGCAGGT 100 1.3960187E-5 24.499998 30 CTCGATT 100 1.3960187E-5 24.499998 7 TTTCGAT 75 0.0018311051 23.333334 44 GAGTCGC 105 2.0366395E-5 23.333332 26 TCGATTG 105 2.0366395E-5 23.333332 8 >>END_MODULE