##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781204_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 304382 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.340302646017175 34.0 32.0 34.0 23.0 34.0 2 31.346078283209913 34.0 33.0 34.0 23.0 34.0 3 31.35287894816382 34.0 33.0 34.0 23.0 34.0 4 31.483711257564508 34.0 33.0 34.0 23.0 34.0 5 31.54058387158242 34.0 33.0 34.0 23.0 34.0 6 34.44223377203645 37.0 34.0 38.0 26.0 38.0 7 34.36092147367453 37.0 34.0 38.0 24.0 38.0 8 34.08685467603209 37.0 34.0 38.0 24.0 38.0 9 34.40414676294919 37.0 34.0 38.0 25.0 38.0 10-11 34.2620818576657 37.0 34.0 38.0 24.0 38.0 12-13 34.221658968007304 37.0 34.0 38.0 24.0 38.0 14-15 34.10801394300583 37.0 34.0 38.0 24.0 38.0 16-17 34.08012628867673 37.0 34.0 38.0 23.5 38.0 18-19 34.12669934490213 37.0 34.0 38.0 24.0 38.0 20-21 34.04523263530695 37.0 34.0 38.0 23.5 38.0 22-23 34.13078795723794 37.0 34.0 38.0 24.0 38.0 24-25 34.11987239718512 37.0 34.0 38.0 24.0 38.0 26-27 34.06053084610785 37.0 34.0 38.0 24.0 38.0 28-29 34.146749807807296 37.0 34.0 38.0 24.0 38.0 30-31 34.23665164168709 37.0 34.0 38.0 24.0 38.0 32-33 34.17235250441879 37.0 34.0 38.0 24.0 38.0 34-35 34.1855300247715 37.0 34.0 38.0 24.0 38.0 36-37 34.041799449376114 37.0 34.0 38.0 23.5 38.0 38-39 34.06747442358615 37.0 34.0 38.0 24.0 38.0 40-41 34.042658567195176 37.0 34.0 38.0 24.0 38.0 42-43 34.12898923063781 37.0 34.0 38.0 24.0 38.0 44-45 34.14292730844794 37.0 34.0 38.0 24.0 38.0 46-47 34.14066534814805 37.0 34.0 38.0 24.0 38.0 48-49 34.102678542095134 37.0 34.0 38.0 24.0 38.0 50-51 33.973526686860595 37.0 34.0 38.0 23.5 38.0 52-53 34.04968592098088 37.0 34.0 38.0 24.0 38.0 54-55 34.02574560913589 37.0 34.0 38.0 24.0 38.0 56-57 33.99694134344344 37.0 34.0 38.0 24.0 38.0 58-59 33.98746312199802 37.0 34.0 38.0 24.0 38.0 60-61 33.96493058065194 37.0 34.0 38.0 24.0 38.0 62-63 33.956017438613316 37.0 34.0 38.0 23.5 38.0 64-65 33.96819785664067 37.0 34.0 38.0 24.0 38.0 66-67 33.86013463345402 37.0 34.0 38.0 23.0 38.0 68-69 33.64429401212949 37.0 34.0 38.0 22.5 38.0 70-71 33.80734570375384 37.0 34.0 38.0 23.0 38.0 72-73 33.746371336018555 37.0 34.0 38.0 23.0 38.0 74-75 33.72191193960221 37.0 34.0 38.0 23.0 38.0 76 32.330873704752584 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 5.0 13 24.0 14 102.0 15 265.0 16 670.0 17 1243.0 18 1677.0 19 2034.0 20 2138.0 21 2432.0 22 2691.0 23 3174.0 24 3692.0 25 4460.0 26 5282.0 27 6364.0 28 7431.0 29 8684.0 30 10466.0 31 12898.0 32 15194.0 33 18221.0 34 23245.0 35 30236.0 36 45619.0 37 96133.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.45281258418697 18.89993495016131 9.96510963197561 24.682142833676103 2 23.724464652968965 20.538993764414453 31.007746844425753 24.728794738190825 3 19.319145021716132 22.09329066764789 29.97713399609701 28.610430314538966 4 13.996556958032999 16.889960641562247 37.09187796913089 32.02160443127386 5 13.538908345434356 33.955358726862954 36.19793548895795 16.307797438744736 6 29.625602039542414 36.97557674238293 18.963342116156674 14.435479101917984 7 29.373287513716317 29.278341031992696 22.48950332148419 18.8588681328068 8 25.9154614924667 34.00989546030974 20.115184209315924 19.95945883790763 9 24.775118108166712 17.54735825377322 21.99801565138543 35.67950798667464 10-11 25.428244771372814 24.709411200399497 27.464501843078764 22.397842185148924 12-13 25.56392953591211 23.03470638868264 26.88841652922972 24.51294754617553 14-15 23.592393768356867 24.14449606087088 24.111478339717856 28.151631831054395 16-17 23.845036828721803 27.106070661208616 25.37502217608137 23.673870333988212 18-19 23.121439506935364 26.72677753612237 26.75289603195984 23.398886924982424 20-21 23.04883337385259 26.909442739715228 26.786735089459956 23.254988796972224 22-23 23.41761339369608 26.370810363293494 27.174405845286515 23.037170397723912 24-25 22.841363812577615 26.793798582044932 27.09802156500713 23.266816040370326 26-27 22.5133220755498 26.900736574436067 27.273459008745586 23.312482341268538 28-29 23.077087344192496 26.58057966634032 27.890282605410306 22.452050384056875 30-31 23.38508847435131 26.493189479009928 27.082416174412415 23.039305872226347 32-33 22.683831501205724 26.93260442470317 26.959544256887725 23.42401981720338 34-35 23.693746673587796 26.22724076982213 27.211365980905573 22.867646575684503 36-37 23.611941573417614 26.126709200938297 26.716757232687872 23.54459199295622 38-39 22.974420300806223 26.63150251985991 27.46318770492342 22.930889474410446 40-41 23.197823787214748 25.72671839990538 27.88321911282533 23.19223870005454 42-43 22.604326142807395 26.08202850365659 27.60265061665933 23.710994736876685 44-45 22.16162585172579 26.087613590816805 27.840016820968387 23.910743736489017 46-47 22.478004612624925 25.503479180766277 28.179392999586046 23.839123207022755 48-49 21.772148155935632 25.685323048012037 28.84434690619025 23.69818188986208 50-51 21.838840667319356 25.54881694712565 28.531253490679475 24.081088894875517 52-53 21.519176561031863 25.303894448423364 28.954898778508586 24.22203021203619 54-55 20.861121879743216 25.741502454153004 29.060194098205542 24.337181567898234 56-57 20.64406228388481 25.946635871877472 28.995122880736446 24.414178963501275 58-59 21.00423317448662 25.67271664013746 28.638895596480076 24.684154588895844 60-61 20.627635475991397 25.475350753415544 29.026005279576054 24.871008491017 62-63 20.153622750359744 25.445164300122876 29.10651746818143 25.294695481335953 64-65 21.06169221570264 25.59349764440736 28.36419367768133 24.980616462208673 66-67 20.91762982042302 25.420524209710166 28.077547292546868 25.584298677319943 68-69 20.659073138359034 25.238844609733825 27.87976950016755 26.22231275173959 70-71 21.342823632224086 25.32451105686623 27.59699192787986 25.735673383029823 72-73 21.31696355237826 24.916880761674477 27.403722953394087 26.362432732553177 74-75 21.208382887292938 25.103816914272198 27.26196029988633 26.425839898548535 76 21.451991247839885 24.988665558410155 26.992726245310166 26.56661694843979 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.5 10 1.0 11 2.0 12 3.0 13 4.5 14 9.5 15 19.5 16 45.0 17 64.0 18 83.0 19 142.0 20 208.0 21 234.0 22 276.0 23 427.0 24 714.0 25 892.0 26 1056.0 27 1463.0 28 1953.5 29 2201.0 30 2564.0 31 3276.0 32 4437.0 33 5249.0 34 5835.0 35 7297.5 36 9136.5 37 10099.0 38 11108.5 39 13606.0 40 16265.0 41 18363.5 42 19291.0 43 19557.5 44 19939.0 45 20045.0 46 20036.0 47 19558.5 48 18120.0 49 16301.5 50 15444.0 51 14385.5 52 11923.5 53 9700.5 54 8881.0 55 8284.5 56 6821.0 57 5311.0 58 4668.0 59 4127.5 60 3400.5 61 2994.5 62 2775.0 63 2609.0 64 2321.5 65 2201.0 66 2101.0 67 2000.0 68 2033.5 69 1927.5 70 1717.0 71 1646.0 72 1611.0 73 1531.5 74 1454.5 75 1422.0 76 1353.5 77 1186.5 78 1027.5 79 967.0 80 804.0 81 550.5 82 399.0 83 338.0 84 285.5 85 191.0 86 119.0 87 89.0 88 73.5 89 49.0 90 30.5 91 17.0 92 13.0 93 9.5 94 4.0 95 3.0 96 4.0 97 2.0 98 1.0 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 4.928018082541017E-4 58-59 1.6426726941803392E-4 60-61 4.928018082541017E-4 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.2853453883606784E-4 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 304382.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.596267929536076 #Duplication Level Percentage of deduplicated Percentage of total 1 72.8974128829069 34.69644794944852 2 13.020827399500023 12.394855791416951 3 5.12929838582599 7.324063807869321 4 2.2651526768667503 4.312512548378228 5 1.2149042370477405 2.8912453787626435 6 0.8431600883184098 2.40787640826566 7 0.6306110758626351 2.1010313608263687 8 0.5016998714609044 1.9103233201813614 9 0.382181502746543 1.6371371882193466 >10 2.996122700751338 26.577262933878593 >50 0.11242183796619906 3.3930360824016543 >100 0.006207340746599949 0.35420723035133367 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.2853453883606784E-4 0.0 2 0.0 0.0 0.0 3.2853453883606784E-4 0.0 3 0.0 0.0 0.0 3.2853453883606784E-4 0.0 4 0.0 0.0 0.0 0.0013141381553442714 0.0 5 0.0 0.0 0.0 0.0013141381553442714 0.0 6 0.0 0.0 0.0 0.0013141381553442714 0.0 7 0.0 0.0 0.0 0.0013141381553442714 0.0 8 0.0 0.0 0.0 0.0013141381553442714 0.0 9 0.0 0.0 0.0 0.0013141381553442714 0.0 10 0.0 0.0 0.0 0.002299741771852475 0.0 11 0.0 0.0 0.0 0.0029568108495246106 0.0 12 0.0 0.0 0.0 0.0032853453883606785 0.0 13 0.0 0.0 0.0 0.0032853453883606785 0.0 14 0.0 0.0 0.0 0.0032853453883606785 0.0 15 0.0 0.0 0.0 0.0032853453883606785 0.0 16 0.0 0.0 0.0 0.0032853453883606785 0.0 17 0.0 0.0 0.0 0.0032853453883606785 0.0 18 0.0 0.0 0.0 0.0032853453883606785 0.0 19 0.0 0.0 0.0 0.003613879927196746 0.0 20 0.0 0.0 0.0 0.003942414466032814 0.0 21 0.0 0.0 0.0 0.00459948354370495 0.0 22 0.0 0.0 0.0 0.00459948354370495 0.0 23 0.0 0.0 0.0 0.00459948354370495 0.0 24 0.0 0.0 0.0 0.007227759854393492 0.0 25 0.0 0.0 0.0 0.00755629439322956 0.0 26 0.0 0.0 0.0 0.00755629439322956 0.0 27 0.0 0.0 0.0 0.01642672694180339 0.0 28 0.0 0.0 0.0 0.02464009041270509 0.0 29 0.0 0.0 0.0 0.03515319565545926 0.0 30 0.0 0.0 0.0 0.05420819890795119 0.0 31 0.0 0.0 0.0 0.06800664953906604 0.0 32 0.0 0.0 0.0 0.09231820541293506 0.0 33 0.0 0.0 0.0 0.12287191752468937 0.0 34 0.0 0.0 0.0 0.17806572004914878 0.0 35 0.0 0.0 0.0 0.25888521660282143 0.0 36 0.0 0.0 0.0 0.3870136867488879 0.0 37 0.0 0.0 0.0 0.5690218212640695 0.0 38 0.0 0.0 0.0 0.8049096201483662 0.0 39 0.0 0.0 0.0 1.104204585028024 0.0 40 0.0 0.0 0.0 1.453108265271928 0.0 41 0.0 0.0 0.0 1.8664047151277015 0.0 42 0.0 0.0 0.0 2.344093934595344 0.0 43 0.0 0.0 0.0 2.91672963578661 0.0 44 0.0 0.0 0.0 3.5806979387743034 0.0 45 0.0 0.0 0.0 4.358996261276948 0.0 46 0.0 0.0 0.0 5.088014402954182 0.0 47 0.0 0.0 0.0 5.900151782956942 0.0 48 0.0 0.0 0.0 6.7152459738092265 0.0 49 0.0 0.0 0.0 7.547095426142151 0.0 50 0.0 0.0 0.0 8.29648270922722 0.0 51 0.0 0.0 0.0 9.03765662884139 0.0 52 0.0 0.0 0.0 9.775545203067198 0.0 53 0.0 0.0 0.0 10.545630162098941 0.0 54 0.0 0.0 0.0 11.36368116380075 0.0 55 0.0 0.0 0.0 12.162677162250068 0.0 56 0.0 0.0 0.0 12.978099887641187 0.0 57 0.0 0.0 0.0 13.768882522619602 0.0 58 0.0 0.0 0.0 14.546195241505739 0.0 59 0.0 0.0 0.0 15.228890013207089 0.0 60 0.0 0.0 0.0 15.98484798706888 0.0 61 0.0 0.0 0.0 16.688568969255737 0.0 62 0.0 0.0 0.0 17.417258576394136 0.0 63 0.0 0.0 0.0 18.100938951711992 0.0 64 0.0 0.0 0.0 18.82962855885039 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGAGA 20 0.0069471514 52.5 57 TGCACGG 50 1.7075357E-4 35.000004 47 ACGGTTA 50 1.7075357E-4 35.000004 50 ATTCGGG 40 0.002416649 35.0 45 CTTTGCG 40 0.002416649 35.0 38 CATCGTT 60 1.213615E-5 35.0 32 GGCGCTA 65 2.0989723E-5 32.307693 18 TGCTACC 55 2.9883228E-4 31.818184 38 ACCTTTG 55 2.9883228E-4 31.818184 42 TGCCGAG 55 2.9883228E-4 31.818184 57 CTCGTAA 45 0.0043035336 31.111113 29 ATTCGCA 45 0.0043035336 31.111113 6 CACTACG 45 0.0043035336 31.111113 4 CGTCCCG 45 0.0043035336 31.111113 35 GCCAACT 45 0.0043035336 31.111113 16 CTCAACG 80 2.4607434E-6 30.625 46 TAACCGG 80 2.4607434E-6 30.625 22 TCGTTGT 60 4.975788E-4 29.166666 34 CGGCTAC 85 3.946432E-6 28.82353 51 ACGTTGG 50 0.0072021727 28.000002 28 >>END_MODULE