SRR1781203_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781203_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	83353
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCGT	3670	4.402960901227311	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCG	401	0.4810864635945916	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCC	278	0.3335212889758017	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCTTATTAACCTCGTATGCCGT	184	0.22074790349477522	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCTTATTAAACTCGTATGCCGT	113	0.13556800595059565	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCTTATTAAGCTCGTATGCCGT	85	0.1019759336796516	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAAGC	20	7.885622E-5	70.0	33
GCTCGTA	25	2.378149E-4	56.000004	38
TAAGCTC	25	2.378149E-4	56.000004	35
CGTATGC	555	0.0	53.603603	41
TCGTATG	555	0.0	53.603603	40
TATGCCG	550	0.0	53.454548	43
CCGTCTT	560	0.0	53.125	47
CTCGTAT	555	0.0	52.972973	39
CGGGTGG	20	0.0069295503	52.5	34
TCTAACT	20	0.0069295503	52.5	41
AATCTCG	500	0.0	52.5	36
CCAGTTT	20	0.0069295503	52.5	9
ATGCCGT	560	0.0	52.5	44
CTCTAAA	20	0.0069295503	52.5	61
CGTCTTC	565	0.0	52.035397	48
TGCCGTC	565	0.0	52.035397	45
TCTCGTA	505	0.0	51.980198	38
GCCGTCT	570	0.0	51.578945	46
GTATGCC	580	0.0	51.293106	42
CTTGAAA	555	0.0	51.081078	57