##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781201_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 186080 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.403450128976782 34.0 33.0 34.0 23.0 34.0 2 31.553192175408427 34.0 33.0 34.0 24.0 34.0 3 31.485715821152194 34.0 33.0 34.0 23.0 34.0 4 31.65924871023216 34.0 34.0 34.0 23.0 34.0 5 31.6781975494411 34.0 34.0 34.0 23.0 34.0 6 34.525 38.0 35.0 38.0 26.0 38.0 7 34.4801913155632 38.0 34.0 38.0 25.0 38.0 8 34.33595227858985 37.0 34.0 38.0 24.0 38.0 9 34.57526332760103 38.0 35.0 38.0 26.0 38.0 10-11 34.42970496560619 38.0 34.0 38.0 25.0 38.0 12-13 34.372116831470336 38.0 34.0 38.0 25.0 38.0 14-15 34.23613230868443 37.5 34.0 38.0 24.0 38.0 16-17 34.192994948409286 37.0 34.0 38.0 24.0 38.0 18-19 34.268188413585555 37.0 34.0 38.0 24.5 38.0 20-21 34.19218078245916 37.0 34.0 38.0 24.0 38.0 22-23 34.24067067927773 37.0 34.0 38.0 24.5 38.0 24-25 34.241968508168526 37.0 34.0 38.0 24.0 38.0 26-27 34.14989789337919 37.0 34.0 38.0 24.0 38.0 28-29 34.22609898968186 37.0 34.0 38.0 24.0 38.0 30-31 34.31026171539123 37.0 34.0 38.0 24.5 38.0 32-33 34.25730062338779 37.0 34.0 38.0 24.0 38.0 34-35 34.27881556319863 37.0 34.0 38.0 24.0 38.0 36-37 34.136191423043854 37.0 34.0 38.0 24.0 38.0 38-39 34.16074000429923 37.0 34.0 38.0 24.0 38.0 40-41 34.130317605331044 37.0 34.0 38.0 24.0 38.0 42-43 34.21679385210662 37.0 34.0 38.0 24.0 38.0 44-45 34.233155094582976 37.0 34.0 38.0 24.0 38.0 46-47 34.214813521066205 37.0 34.0 38.0 24.0 38.0 48-49 34.18756717540843 37.0 34.0 38.0 24.0 38.0 50-51 34.06847861134996 37.0 34.0 38.0 23.5 38.0 52-53 34.162800945829744 37.0 34.0 38.0 24.0 38.0 54-55 34.11191154342218 37.0 34.0 38.0 24.0 38.0 56-57 34.09069486242476 37.0 34.0 38.0 24.0 38.0 58-59 34.1066557394669 37.0 34.0 38.0 24.0 38.0 60-61 34.07629245485813 37.0 34.0 38.0 24.0 38.0 62-63 34.04690724419605 37.0 34.0 38.0 24.0 38.0 64-65 34.05931319862425 37.0 34.0 38.0 24.0 38.0 66-67 33.94469582975064 37.0 34.0 38.0 23.0 38.0 68-69 33.724916702493545 37.0 34.0 38.0 22.5 38.0 70-71 33.85353611349957 37.0 34.0 38.0 23.0 38.0 72-73 33.80793475924334 37.0 34.0 38.0 23.0 38.0 74-75 33.76534286328461 37.0 34.0 38.0 23.0 38.0 76 32.38115864144454 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 22.0 14 92.0 15 223.0 16 516.0 17 905.0 18 1272.0 19 1421.0 20 1366.0 21 1416.0 22 1547.0 23 1801.0 24 2103.0 25 2484.0 26 2953.0 27 3510.0 28 4075.0 29 4893.0 30 5950.0 31 7174.0 32 8829.0 33 10867.0 34 13915.0 35 18481.0 36 28226.0 37 62037.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.274290627687016 17.96969045571797 9.448624247635426 25.30739466895959 2 23.87736457437661 20.11822871883061 30.910898538263115 25.093508168529667 3 20.06932502149613 22.083512467755803 29.02998710232158 28.817175408426483 4 14.511500429922613 16.228503869303527 36.71216680997421 32.54782889079966 5 14.1621883061049 33.668314703353396 35.30900687876182 16.86049011177988 6 30.035468615649187 36.66111349957008 18.507093723129834 14.796324161650903 7 29.42659071367154 29.15627687016337 21.847055030094584 19.57007738607051 8 26.482158211521927 33.64090713671539 19.66627257093723 20.21066208082545 9 25.334264832330184 15.858770421324161 21.205932932072226 37.60103181427343 10-11 25.90713671539123 24.04664660361135 27.344959157351678 22.701257523645744 12-13 26.108394239036976 22.392519346517627 26.19733447979364 25.30175193465176 14-15 24.019776440240754 23.73280309544282 23.645206362854687 28.602214101461737 16-17 24.234737747205504 26.20243981083405 25.032512897678416 24.530309544282026 18-19 23.608931642304384 25.980223559759242 26.11215606190886 24.298688736027515 20-21 23.512467755803957 26.30374032674119 26.01730438521066 24.166487532244197 22-23 24.088564058469476 25.625268701633708 26.329804385210664 23.956362854686155 24-25 23.67718185726569 25.98559759243336 25.993927343078244 24.3432932072227 26-27 22.856029664660362 26.15595442820292 26.48188950988822 24.506126397248494 28-29 23.772839638865005 25.763381341358553 26.98194325021496 23.481835769561478 30-31 23.891068357695612 25.792401117798796 26.47785898538263 23.838671539122956 32-33 23.14864574376612 26.371184436801375 26.37091573516767 24.109254084264833 34-35 23.982964316423043 25.418637145313845 26.578084694754946 24.020313843508166 36-37 24.12994411006019 25.406008168529663 26.109737747205504 24.354309974204643 38-39 23.316046861564917 25.982373172828893 26.967433361994843 23.73414660361135 40-41 23.522947119518488 25.127901977644022 27.38150257953568 23.967648323301805 42-43 23.26176913155632 25.216842218400686 27.073033104041272 24.44835554600172 44-45 22.622588732235414 25.234106927415432 27.231640239789982 24.911664100559168 46-47 22.956792777300087 24.883383490971624 27.597538693035258 24.562285038693034 48-49 22.35275150472915 24.646657351676698 28.372474204643165 24.62811693895099 50-51 22.011500429922613 24.92261392949269 27.966734737747206 25.09915090283749 52-53 21.56841143594153 24.78530739466896 28.60167669819432 25.044604471195186 54-55 21.308308254514188 25.26950773860705 28.55760963026655 24.864574376612207 56-57 20.97588108212685 25.284558088543513 28.478648738700972 25.26091209062866 58-59 21.147738326194787 25.109765207250685 28.12246411470397 25.620032351850558 60-61 21.118775140599265 24.89245130415389 28.10023726545517 25.888536289791674 62-63 20.559389073399327 24.465815410741733 28.76428164533153 26.210513870527414 64-65 21.404675983523084 24.729616801511188 27.849805324097087 26.015901890868637 66-67 21.393390423933987 24.60547564603111 27.315353466413367 26.685780463621533 68-69 21.119906705790044 24.909715280688744 27.110136609378866 26.86024140414235 70-71 21.897210048447295 24.616761205620207 26.76827253014185 26.71775621579065 72-73 21.794892464450392 24.367200851255923 26.69095755543374 27.146949128859944 74-75 21.686873246702994 24.556368834574748 26.55956104429325 27.197196874429004 76 21.879836629406707 24.178847807394668 26.583190025795357 27.358125537403268 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 2.5 14 6.5 15 12.5 16 31.0 17 47.0 18 54.5 19 80.0 20 130.0 21 162.0 22 208.5 23 354.5 24 515.5 25 577.0 26 681.0 27 874.0 28 1198.5 29 1434.0 30 1584.5 31 1959.5 32 2659.0 33 3134.0 34 3431.5 35 4231.5 36 5333.5 37 5933.0 38 6416.5 39 7578.0 40 8927.5 41 10059.5 42 10520.0 43 10863.5 44 11323.5 45 11299.0 46 11158.0 47 11102.0 48 10372.5 49 9231.5 50 8764.0 51 8217.0 52 7007.5 53 5964.0 54 5583.0 55 5086.0 56 4249.5 57 3656.0 58 3402.0 59 3066.5 60 2534.5 61 2343.5 62 2349.0 63 2267.5 64 2081.0 65 1904.5 66 1858.5 67 1884.0 68 1780.5 69 1697.0 70 1725.5 71 1734.0 72 1641.0 73 1538.5 74 1442.5 75 1356.0 76 1243.5 77 1070.5 78 905.5 79 801.0 80 678.0 81 507.5 82 400.0 83 340.0 84 276.0 85 180.5 86 117.0 87 85.0 88 62.0 89 25.5 90 11.0 91 7.5 92 5.0 93 4.5 94 2.5 95 0.5 96 0.0 97 0.5 98 0.5 99 1.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 2.6870163370593293E-4 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0010748065348237317 58-59 5.374032674118659E-4 60-61 8.061049011177987E-4 62-63 0.0010748065348237317 64-65 8.061049011177987E-4 66-67 8.061049011177987E-4 68-69 0.0010748065348237317 70-71 8.061049011177987E-4 72-73 0.0010748065348237317 74-75 0.0010748065348237317 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 186080.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.04546431642304 #Duplication Level Percentage of deduplicated Percentage of total 1 71.60890311730678 37.985275150472916 2 14.274570192590192 15.14402407566638 3 5.753391350157537 9.155739466895959 4 2.4962768597971774 5.29664660361135 5 1.3383042742662628 3.549548581255374 6 0.8398593818067615 2.673043852106621 7 0.6412919043228951 2.3812338779019777 8 0.44981612246345243 1.9088564058469475 9 0.40827904809182736 1.9491616509028376 >10 2.1700588610736826 19.35565348237317 >50 0.018235788748518344 0.5465391229578676 >100 0.0010130993749176856 0.05427773000859845 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0021496130696474634 0.0 2 0.0 0.0 0.0 0.0021496130696474634 0.0 3 0.0 0.0 0.0 0.0021496130696474634 0.0 4 0.0 0.0 0.0 0.0021496130696474634 0.0 5 0.0 0.0 0.0 0.0021496130696474634 0.0 6 0.0 0.0 0.0 0.0021496130696474634 0.0 7 0.0 0.0 0.0 0.0021496130696474634 0.0 8 0.0 0.0 0.0 0.0021496130696474634 0.0 9 0.0 0.0 0.0 0.0021496130696474634 0.0 10 0.0 0.0 0.0 0.002687016337059329 0.0 11 0.0 0.0 0.0 0.002687016337059329 0.0 12 0.0 0.0 0.0 0.002687016337059329 0.0 13 0.0 0.0 0.0 0.002687016337059329 0.0 14 0.0 0.0 0.0 0.004836629406706793 0.0 15 0.0 0.0 0.0 0.004836629406706793 0.0 16 0.0 0.0 0.0 0.005374032674118658 0.0 17 0.0 0.0 0.0 0.005374032674118658 0.0 18 0.0 0.0 0.0 0.005911435941530524 0.0 19 0.0 0.0 0.0 0.0069862424763542565 0.0 20 0.0 0.0 0.0 0.0069862424763542565 0.0 21 0.0 0.0 0.0 0.007523645743766122 0.0 22 0.0 0.0 0.0 0.008061049011177988 0.0 23 0.0 0.0 0.0 0.008061049011177988 0.0 24 0.0 0.0 0.0 0.008598452278589854 0.0 25 0.0 5.374032674118659E-4 0.0 0.010748065348237317 0.0 26 0.0 5.374032674118659E-4 0.0 0.013435081685296647 0.0 27 0.0 5.374032674118659E-4 0.0 0.024720550300945828 0.0 28 0.0 5.374032674118659E-4 0.0 0.03546861564918315 0.0 29 0.0 5.374032674118659E-4 0.0 0.048366294067067925 0.0 30 0.0 5.374032674118659E-4 0.0 0.06932502149613069 0.0 31 0.0 5.374032674118659E-4 0.0 0.0913585554600172 0.0 32 0.0 5.374032674118659E-4 0.0 0.11607910576096303 0.0 33 0.0 5.374032674118659E-4 0.0 0.16283319002579535 0.0 34 0.0 5.374032674118659E-4 0.0 0.22570937231298366 0.0 35 0.0 5.374032674118659E-4 0.0 0.33319002579535684 0.0 36 0.0 5.374032674118659E-4 0.0 0.5046216680997421 0.0 37 0.0 5.374032674118659E-4 0.0 0.7545141874462596 0.0 38 0.0 5.374032674118659E-4 0.0 1.0699699054170249 0.0 39 0.0 5.374032674118659E-4 0.0 1.4466895958727428 0.0 40 0.0 5.374032674118659E-4 0.0 1.8819862424763543 0.0 41 0.0 5.374032674118659E-4 0.0 2.3285683576956147 0.0 42 0.0 5.374032674118659E-4 0.0 2.8176053310404128 0.0 43 0.0 5.374032674118659E-4 0.0 3.4211092003439383 0.0 44 0.0 5.374032674118659E-4 0.0 4.155739466895959 0.0 45 0.0 5.374032674118659E-4 0.0 4.983877901977644 0.0 46 0.0 5.374032674118659E-4 0.0 5.88993981083405 0.0 47 0.0 5.374032674118659E-4 0.0 6.796001719690456 0.0 48 0.0 5.374032674118659E-4 0.0 7.74183147033534 0.0 49 0.0 5.374032674118659E-4 0.0 8.594153052450558 0.0 50 0.0 5.374032674118659E-4 0.0 9.345442820292348 0.0 51 0.0 5.374032674118659E-4 0.0 10.091358555460017 0.0 52 0.0 5.374032674118659E-4 0.0 10.873280309544281 0.0 53 0.0 5.374032674118659E-4 0.0 11.643916595012898 0.0 54 0.0 5.374032674118659E-4 0.0 12.460769561478934 0.0 55 0.0 5.374032674118659E-4 0.0 13.293744625967326 0.0 56 0.0 5.374032674118659E-4 0.0 14.118121238177128 0.0 57 0.0 5.374032674118659E-4 0.0 14.98549011177988 0.0 58 0.0 5.374032674118659E-4 0.0 15.845335339638865 0.0 59 0.0 5.374032674118659E-4 0.0 16.631018916595014 0.0 60 0.0 5.374032674118659E-4 0.0 17.427450558899398 0.0 61 0.0 5.374032674118659E-4 0.0 18.163693035253655 0.0 62 0.0 5.374032674118659E-4 0.0 18.905846947549442 0.0 63 0.0 5.374032674118659E-4 0.0 19.59372312983663 0.0 64 0.0 5.374032674118659E-4 0.0 20.343400687876183 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTCG 20 7.9111895E-5 70.00001 15 GTTTCGT 25 2.3858136E-4 56.000004 16 CCCGTTT 25 2.3858136E-4 56.000004 13 CTTGATA 20 0.0069429274 52.500004 24 AACTCTC 30 5.8666355E-4 46.666668 19 CCGTTTC 30 5.8666355E-4 46.666668 14 CGTGCAA 35 0.0012530582 40.000004 20 GATCTAA 35 0.0012530582 40.000004 15 TAGCGAG 45 9.172193E-5 38.88889 28 ATCCCGT 45 9.172193E-5 38.88889 11 ACGTTCT 40 0.0024142424 35.000004 39 ATCGTGA 40 0.0024142424 35.000004 13 GTGCTAG 40 0.0024142424 35.000004 27 CAAGAAT 40 0.0024142424 35.000004 24 GCTTTAA 40 0.0024142424 35.000004 1 GATCCCG 65 2.0946136E-5 32.307693 10 CTTGCTA 55 2.9838886E-4 31.818184 36 CGAGGTT 55 2.9838886E-4 31.818184 22 CATGTAC 55 2.9838886E-4 31.818184 3 GTGCAAG 45 0.0042992746 31.111113 21 >>END_MODULE