##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781200_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 306986 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.484611676102492 34.0 33.0 34.0 23.0 34.0 2 31.53273113431883 34.0 33.0 34.0 24.0 34.0 3 31.451163896724932 34.0 33.0 34.0 23.0 34.0 4 31.625741890509666 34.0 34.0 34.0 23.0 34.0 5 31.686770732215802 34.0 34.0 34.0 23.0 34.0 6 34.54980357410436 38.0 34.0 38.0 26.0 38.0 7 34.42363495403699 37.0 34.0 38.0 25.0 38.0 8 34.19746177350107 37.0 34.0 38.0 24.0 38.0 9 34.50058308847961 38.0 34.0 38.0 26.0 38.0 10-11 34.36793860306334 37.5 34.0 38.0 25.0 38.0 12-13 34.33060302424215 37.0 34.0 38.0 24.5 38.0 14-15 34.21834546200804 37.0 34.0 38.0 24.0 38.0 16-17 34.19228238421296 37.0 34.0 38.0 24.5 38.0 18-19 34.260643807860944 37.0 34.0 38.0 24.5 38.0 20-21 34.185845608594526 37.0 34.0 38.0 24.0 38.0 22-23 34.26102167525555 37.0 34.0 38.0 24.5 38.0 24-25 34.2473044373359 37.0 34.0 38.0 24.0 38.0 26-27 34.17141986931 37.0 34.0 38.0 24.0 38.0 28-29 34.26380518981321 37.0 34.0 38.0 24.0 38.0 30-31 34.34462483631175 37.0 34.0 38.0 25.0 38.0 32-33 34.27569335409432 37.0 34.0 38.0 24.5 38.0 34-35 34.30500250825771 37.0 34.0 38.0 24.0 38.0 36-37 34.15471389574769 37.0 34.0 38.0 24.0 38.0 38-39 34.16911520395067 37.0 34.0 38.0 24.0 38.0 40-41 34.152754523007566 37.0 34.0 38.0 24.0 38.0 42-43 34.2221339083867 37.0 34.0 38.0 24.0 38.0 44-45 34.25533249073247 37.0 34.0 38.0 24.5 38.0 46-47 34.24912862475813 37.0 34.0 38.0 24.0 38.0 48-49 34.212991797671556 37.0 34.0 38.0 24.0 38.0 50-51 34.0782234368994 37.0 34.0 38.0 24.0 38.0 52-53 34.16889369547797 37.0 34.0 38.0 24.0 38.0 54-55 34.134411666981556 37.0 34.0 38.0 24.0 38.0 56-57 34.10136455734138 37.0 34.0 38.0 24.0 38.0 58-59 34.11375111568606 37.0 34.0 38.0 24.0 38.0 60-61 34.078897734750115 37.0 34.0 38.0 24.0 38.0 62-63 34.05579407529985 37.0 34.0 38.0 24.0 38.0 64-65 34.067377665430996 37.0 34.0 38.0 24.0 38.0 66-67 33.9658355755637 37.0 34.0 38.0 24.0 38.0 68-69 33.7427407113028 37.0 34.0 38.0 22.5 38.0 70-71 33.87752210198511 37.0 34.0 38.0 23.0 38.0 72-73 33.82481448665412 37.0 34.0 38.0 23.0 38.0 74-75 33.81064771683399 37.0 34.0 38.0 23.0 38.0 76 32.39803443805255 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 8.0 13 27.0 14 94.0 15 298.0 16 741.0 17 1367.0 18 1879.0 19 2060.0 20 2065.0 21 2180.0 22 2421.0 23 2856.0 24 3615.0 25 4223.0 26 5009.0 27 5896.0 28 7187.0 29 8588.0 30 10129.0 31 12490.0 32 15074.0 33 18250.0 34 23180.0 35 30424.0 36 46475.0 37 100449.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.83438332692696 18.570227958278227 9.8665737199742 24.72881499482061 2 24.084811685223432 21.084674871166765 30.476959861361756 24.35355358224805 3 20.064758653489083 22.256389542194107 29.143022808857733 28.535828995459077 4 14.3752483826624 17.219352022567804 37.062276455603836 31.343123139165957 5 14.349188562344864 33.30086714052107 35.90065996494955 16.44928433218453 6 28.826395991999636 37.486074283517816 19.01747962447799 14.670050100004561 7 28.857016280872745 29.44108200373958 22.432944824845432 19.268956890542242 8 25.924309251887706 34.05790492074557 19.8347807391868 20.183005088179918 9 25.06954714547243 17.166580886424786 21.637468809652557 36.12640315845022 10-11 25.648400904275764 24.81839562716215 27.01898457910133 22.514218889460757 12-13 25.91518831477657 22.954629852827164 26.028059911526906 25.102121920869358 14-15 23.97894366518343 23.91314261888164 23.679744353162686 28.428169362772245 16-17 24.07487637872737 26.595349625064337 25.236818617135636 24.092955379072663 18-19 23.294710507971047 26.398597981666917 26.543067110552272 23.763624399809764 20-21 23.314255373209203 26.549907813385627 26.431987126448764 23.703849686956406 22-23 23.833985914667117 26.005909064257004 26.683953014143967 23.476152006931912 24-25 23.374192959939542 26.195494257067097 26.651378238747043 23.778934544246315 26-27 22.841106760568884 26.461467298182978 26.71929664544963 23.978129295798507 28-29 23.33819783312594 26.179532617122604 27.48545536278527 22.99681418696618 30-31 23.61052295544422 26.09320946232076 26.880541783664402 23.41572579857062 32-33 22.974989087450243 26.865394513104835 26.494530695210855 23.66508570423407 34-35 23.974871818258812 25.895480575661427 26.93901350550188 23.190634100577874 36-37 23.869818167603736 25.722182770549797 26.438013459897192 23.969985601949276 38-39 22.99616269145824 26.412279387333626 27.226811646133697 23.36474627507443 40-41 23.401392897395972 25.443505567029117 27.43919918172164 23.71590235385327 42-43 22.996325565335226 25.53096883896985 27.259386421530625 24.213319174164294 44-45 22.529366160020324 25.52934010020001 27.502719993745643 24.43857374603402 46-47 22.76781351592581 24.9957652791984 27.84898985621494 24.38743134866085 48-49 22.03683555601884 25.051793892881108 28.537620608105907 24.373749942994145 50-51 22.134071260578658 25.183884607115637 28.264155368648737 24.417888763656975 52-53 21.673952558097113 25.107659632686836 28.680298124344432 24.538089684871622 54-55 21.207970396044118 25.525268253275396 28.630295844110154 24.63646550657033 56-57 21.18011896307975 25.62071234518838 28.46758484100252 24.73158385072935 58-59 21.371495768536676 25.447088792322774 28.07896777051722 25.102447668623324 60-61 20.93580814760282 25.243496446092006 28.35748210016092 25.463213306144254 62-63 20.635794466197154 24.996253900829355 28.644465871407814 25.723485761565673 64-65 21.52085111373157 24.997231144091263 27.825698891806137 25.656218850371026 66-67 21.336640758861968 25.154404435381416 27.437896190705764 26.071058615050852 68-69 21.432084850774956 25.02052210850006 27.09814128331585 26.44925175740913 70-71 21.95181539223287 24.938596548376797 26.96784218172816 26.141745877662174 72-73 21.81988755187533 24.673112128891873 26.82939938629123 26.67760093294157 74-75 21.572645006612678 24.867583538011505 26.949763181382863 26.610008273992953 76 21.548865420572923 24.76432150000326 26.96930804662102 26.717505032802798 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 1.0 11 2.0 12 3.0 13 2.0 14 2.5 15 9.0 16 30.0 17 46.0 18 53.5 19 84.5 20 155.5 21 203.0 22 256.5 23 383.5 24 553.5 25 650.0 26 827.0 27 1162.0 28 1580.0 29 1840.0 30 2144.0 31 2818.0 32 3935.5 33 4683.0 34 5317.5 35 6729.0 36 8489.5 37 9473.0 38 10569.5 39 13147.5 40 15836.5 41 18001.5 42 18959.0 43 19144.0 44 19816.0 45 20407.0 46 20511.0 47 20286.0 48 18870.5 49 16949.0 50 16218.0 51 14920.0 52 12273.5 53 10164.5 54 9404.0 55 8638.0 56 6995.0 57 5571.5 58 5025.0 59 4428.5 60 3563.5 61 3040.5 62 2786.0 63 2738.5 64 2540.5 65 2380.5 66 2331.5 67 2292.0 68 2306.0 69 2288.0 70 2176.0 71 2096.0 72 2064.0 73 1965.0 74 1812.5 75 1727.0 76 1621.0 77 1415.5 78 1205.0 79 1094.0 80 939.5 81 676.5 82 467.0 83 366.0 84 335.0 85 232.0 86 133.5 87 107.0 88 86.5 89 47.5 90 21.5 91 14.5 92 15.0 93 9.5 94 3.5 95 2.5 96 2.0 97 1.5 98 1.5 99 6.0 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 306986.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.37224494942918 #Duplication Level Percentage of deduplicated Percentage of total 1 71.93303456042266 33.356962985916745 2 13.279972271452001 12.316442541867993 3 5.351960826259326 7.445473151851406 4 2.360282352048069 4.378063655159516 5 1.335370640088791 3.096206721023673 6 0.8749048021691287 2.4342779876171226 7 0.6569989756886546 2.132656220251085 8 0.5393729932847047 2.000954925096412 9 0.42422214907431877 1.7704920068862813 >10 3.1246988123620514 27.354839640712964 >50 0.11076879711615885 3.275068744487064 >100 0.008412820034138646 0.4385614191297448 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0032574775396923637 0.0 2 0.0 0.0 0.0 0.003908973047630836 0.0 3 0.0 0.0 0.0 0.003908973047630836 0.0 4 0.0 0.0 0.0 0.006189207325415491 0.0 5 0.0 0.0 0.0 0.006514955079384727 0.0 6 0.0 0.0 0.0 0.006840702833353964 0.0 7 0.0 0.0 0.0 0.0071664505873232 0.0 8 0.0 0.0 0.0 0.007492198341292436 0.0 9 0.0 0.0 0.0 0.008469441603200146 0.0 10 0.0 0.0 0.0 0.008469441603200146 0.0 11 0.0 0.0 0.0 0.008469441603200146 0.0 12 0.0 0.0 0.0 0.008469441603200146 0.0 13 0.0 0.0 0.0 0.008469441603200146 0.0 14 0.0 0.0 0.0 0.008795189357169383 0.0 15 0.0 0.0 0.0 0.009446684865107855 0.0 16 0.0 0.0 0.0 0.009446684865107855 0.0 17 0.0 0.0 0.0 0.009446684865107855 0.0 18 0.0 0.0 0.0 0.009772432619077091 0.0 19 0.0 0.0 0.0 0.009772432619077091 0.0 20 0.0 0.0 0.0 0.010098180373046328 0.0 21 0.0 0.0 0.0 0.011075423634954036 0.0 22 0.0 0.0 0.0 0.013029910158769455 0.0 23 0.0 0.0 0.0 0.013681405666707927 0.0 24 0.0 0.0 0.0 0.014984396682584873 0.0 25 0.0 0.0 0.0 0.01596163994449258 0.0 26 0.0 0.0 0.0 0.017590378714338765 0.0 27 0.0 0.0 0.0 0.02899155010326204 0.0 28 0.0 0.0 0.0 0.04136996475409302 0.0 29 0.0 0.0 0.0 0.05863459571446255 0.0 30 0.0 0.0 0.0 0.0824141817542168 0.0 31 0.0 0.0 0.0 0.10326203800824793 0.0 32 0.0 0.0 0.0 0.12867036281784838 0.0 33 0.0 0.0 0.0 0.1700403275719414 0.0 34 0.0 0.0 0.0 0.24105333793723493 0.0 35 0.0 0.0 0.0 0.3312854657867134 0.0 36 0.0 0.0 0.0 0.4694025134696696 0.0 37 0.0 0.0 0.0 0.7313037076609357 0.0 38 0.0 0.0 0.0 1.0186132266618022 0.0 39 0.0 0.0 0.0 1.3867081886470394 0.0 40 0.0 0.0 0.0 1.7919383945847693 0.0 41 0.0 0.0 0.0 2.246356511371854 0.0 42 0.0 0.0 0.0 2.7669014222146937 0.0 43 0.0 0.0 0.0 3.4154652003674433 0.0 44 0.0 0.0 0.0 4.091391789853609 0.0 45 0.0 0.0 0.0 4.8930570123719 0.0 46 0.0 0.0 0.0 5.735766451890314 0.0 47 0.0 0.0 0.0 6.6087704325278676 0.0 48 0.0 0.0 0.0 7.4645097822050515 0.0 49 0.0 0.0 3.2574775396923637E-4 8.281810896913866 0.0 50 0.0 0.0 3.2574775396923637E-4 8.9750021173604 0.0 51 0.0 0.0 3.2574775396923637E-4 9.666890346791059 0.0 52 0.0 0.0 3.2574775396923637E-4 10.384512648785286 0.0 53 0.0 0.0 3.2574775396923637E-4 11.113536122168437 0.0 54 0.0 0.0 3.2574775396923637E-4 11.839302118011897 0.0 55 0.0 0.0 3.2574775396923637E-4 12.592105177434801 0.0 56 0.0 0.0 3.2574775396923637E-4 13.393444652199124 0.0 57 0.0 0.0 3.2574775396923637E-4 14.169375802153844 0.0 58 0.0 0.0 3.2574775396923637E-4 14.916966897513241 0.0 59 0.0 0.0 3.2574775396923637E-4 15.633286208491592 0.0 60 0.0 0.0 3.2574775396923637E-4 16.354491735779483 0.0 61 0.0 0.0 3.2574775396923637E-4 17.061364361892725 0.0 62 0.0 0.0 3.2574775396923637E-4 17.742502915442397 0.0 63 0.0 0.0 3.2574775396923637E-4 18.44546656850801 0.0 64 0.0 0.0 3.2574775396923637E-4 19.116181193930668 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACCGG 60 8.367351E-11 52.5 22 AACCGGC 65 1.8553692E-10 48.461536 23 CGGCTTT 75 7.530616E-10 42.0 26 ACCAGCG 45 9.1861475E-5 38.888885 12 CACTAAG 40 0.0024166806 35.000004 36 CCATAGG 40 0.0024166806 35.000004 1 ACCGGCT 105 5.475158E-10 33.333336 24 AAGAATT 135 7.2759576E-12 31.11111 55 ATTCGCA 45 0.004303592 31.111109 37 TATGCGA 45 0.004303592 31.111109 70 GGCTTTT 105 2.0163498E-8 30.000002 27 CTAACCG 130 1.6552804E-10 29.615383 21 TTTTTGC 110 3.169407E-8 28.636362 30 CATTATC 110 3.169407E-8 28.636362 47 GGCCATT 110 3.169407E-8 28.636362 44 ATTATCG 110 3.169407E-8 28.636362 48 ATCGAAG 110 3.169407E-8 28.636362 51 AGCGTTA 50 0.007202268 27.999998 10 TGCCAAC 50 0.007202268 27.999998 45 GCTCTAT 50 0.007202268 27.999998 1 >>END_MODULE