##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781200_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 276076 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.29815340703285 34.0 34.0 34.0 33.0 34.0 2 33.30313391964531 34.0 34.0 34.0 33.0 34.0 3 33.368547066749734 34.0 34.0 34.0 33.0 34.0 4 33.44057433460352 34.0 34.0 34.0 34.0 34.0 5 33.4395057882612 34.0 34.0 34.0 34.0 34.0 6 36.89018965792028 38.0 37.0 38.0 35.0 38.0 7 36.79330329329605 38.0 37.0 38.0 34.0 38.0 8 36.59401034497747 38.0 37.0 38.0 34.0 38.0 9 36.536877526478214 38.0 37.0 38.0 34.0 38.0 10-11 36.47197148611252 38.0 37.0 38.0 34.0 38.0 12-13 36.40404091626944 38.0 37.0 38.0 34.0 38.0 14-15 36.41302757211782 38.0 37.0 38.0 34.0 38.0 16-17 36.358480997986064 38.0 37.0 38.0 34.0 38.0 18-19 36.357291108245555 38.0 37.0 38.0 34.0 38.0 20-21 36.295007534157264 38.0 37.0 38.0 34.0 38.0 22-23 36.3506769874962 38.0 37.0 38.0 34.0 38.0 24-25 36.35344977469972 38.0 37.0 38.0 34.0 38.0 26-27 36.13148553296918 38.0 37.0 38.0 33.0 38.0 28-29 36.12356561236761 38.0 37.0 38.0 33.5 38.0 30-31 36.1533780553181 38.0 37.0 38.0 34.0 38.0 32-33 36.11663454990655 38.0 37.0 38.0 33.0 38.0 34-35 36.13369144728263 38.0 37.0 38.0 33.5 38.0 36-37 36.08605601356148 38.0 37.0 38.0 32.5 38.0 38-39 36.00261159970443 38.0 37.0 38.0 32.0 38.0 40-41 36.06114077283067 38.0 37.0 38.0 32.5 38.0 42-43 36.086190034628146 38.0 37.0 38.0 33.0 38.0 44-45 36.05370622582187 38.0 37.0 38.0 32.0 38.0 46-47 36.07200191251684 38.0 37.0 38.0 33.0 38.0 48-49 36.0531013199264 38.0 37.0 38.0 32.5 38.0 50-51 35.958761355568754 38.0 37.0 38.0 32.0 38.0 52-53 35.98692751271389 38.0 37.0 38.0 32.0 38.0 54-55 36.00382684478187 38.0 37.0 38.0 32.0 38.0 56-57 35.957645720743564 38.0 37.0 38.0 32.0 38.0 58-59 35.957077036757994 38.0 37.0 38.0 32.0 38.0 60-61 35.94245062953679 38.0 37.0 38.0 32.0 38.0 62-63 35.92134593372839 38.0 37.0 38.0 32.0 38.0 64-65 35.86758537504166 38.0 37.0 38.0 32.0 38.0 66-67 35.837021327460555 38.0 37.0 38.0 31.0 38.0 68-69 35.762449470435676 38.0 36.0 38.0 31.0 38.0 70-71 35.64423202306611 38.0 36.0 38.0 31.0 38.0 72-73 35.533655587591824 38.0 36.0 38.0 31.0 38.0 74-75 35.53718541271244 38.0 36.0 38.0 31.0 38.0 76 34.65094032078123 37.0 34.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 2.0 21 13.0 22 40.0 23 73.0 24 193.0 25 363.0 26 720.0 27 1228.0 28 2107.0 29 3372.0 30 5297.0 31 7731.0 32 11216.0 33 15665.0 34 22037.0 35 30634.0 36 46521.0 37 128862.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 45.265796374911254 17.933829814978484 10.025138005476752 26.775235804633507 2 23.79417261913386 21.046016314348222 30.360842666512124 24.798968400005794 3 20.093742302844145 22.230110549269043 29.762818933916748 27.91332821397007 4 14.194642055086282 18.58980860342804 36.13533954418349 31.080209797302196 5 13.983106101218503 33.4875179298454 36.130268476796246 16.399107492139844 6 28.671452788362622 38.38001130123589 18.631826018922325 14.316709891479157 7 28.434199278459555 29.458554890682276 21.380706761906143 20.726539068952025 8 25.160825279995365 35.46450977267129 19.403352699981163 19.971312247352177 9 24.47188455352874 17.02864428635593 20.615337805531812 37.88413335458352 10-11 25.041655196395197 25.358959127196854 27.168786855793332 22.430598820614613 12-13 25.178030687202074 22.867616163665076 26.209268462307477 25.745084686825365 14-15 23.200495515727553 23.5246816094119 23.107948535910403 30.166874338950144 16-17 24.337320158217302 27.34826641939176 24.264151900201394 24.050261522189544 18-19 23.84433996435764 26.293122183746505 25.67825526304351 24.184282588852348 20-21 22.728886248714122 26.35614830698793 25.40151987133978 25.513445572958172 22-23 23.216433156087454 26.887704834900532 25.640584476738287 24.255277532273723 24-25 23.947934626696995 26.793527869137485 25.655254350251376 23.60328315391414 26-27 23.167171358611398 27.267491560294992 25.912792129703416 23.652544951390198 28-29 23.79670815282748 26.183369796722644 26.53019458410003 23.489727466349848 30-31 24.20909459713992 25.637324504846493 27.02824584534693 23.125335052666657 32-33 22.336059635752473 27.316391138671957 25.94629739636912 24.40125182920645 34-35 23.113019603297644 25.933076399252382 28.018009533606687 22.93589446384329 36-37 23.189991161853982 26.226111650415103 26.833371970037234 23.75052521769368 38-39 22.6082672887176 26.440183137976497 27.01556817687883 23.93598139642707 40-41 22.54306785088164 25.1916139034179 27.841246613251425 24.424071632449035 42-43 23.518161665628305 25.23689129080398 27.428316840290357 23.81663020327736 44-45 21.94305191324128 26.292941074196964 27.76083397325374 24.003173039308017 46-47 23.118815108883062 24.747714397484753 27.290673582636664 24.842796910995524 48-49 22.42009446674104 24.746627740187485 27.76789724568597 25.0653805473855 50-51 21.40207768875237 24.773975282168678 28.559345977194685 25.264601051884263 52-53 21.03551196047465 24.847867978382766 29.612498007794958 24.50412205334763 54-55 20.483308943913993 25.221678088642257 28.94311711267912 25.351895854764628 56-57 20.963973688404643 25.201574928642838 28.08755560063171 25.746895782320813 58-59 20.31397151509005 25.23345020936264 29.054318376099335 25.39825989944798 60-61 20.91960184876628 25.977448238890737 27.45403439632565 25.64891551601733 62-63 19.55204364015706 26.598653993827785 27.456751039568815 26.39255132644634 64-65 20.02999174140454 27.107571828047348 26.469703994552223 26.392732435995885 66-67 20.15042959185152 26.852569582288936 26.15547892609282 26.84152189976673 68-69 20.095372288790042 27.274554832727222 25.7934409365537 26.836631941929035 70-71 20.77561975687854 26.59122850229647 25.533729842507135 27.099421898317853 72-73 20.823976006606877 25.705783914574248 25.45838826989669 28.011851808922184 74-75 20.945138295252033 25.687129630971185 25.60128370448717 27.766448369289616 76 21.293774178124863 25.54767527782205 25.56614845187557 27.592402092177515 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 4.5 15 14.0 16 28.5 17 38.0 18 57.0 19 87.0 20 110.0 21 122.0 22 195.5 23 348.0 24 481.0 25 535.0 26 723.5 27 1057.0 28 1409.0 29 1616.0 30 1861.0 31 2431.5 32 3473.0 33 4189.0 34 4663.0 35 5788.5 36 7475.0 37 8510.0 38 9268.5 39 11687.5 40 14766.0 41 16962.5 42 17741.0 43 18085.5 44 18427.5 45 18181.0 46 17937.0 47 17789.5 48 16424.5 49 14729.5 50 14252.0 51 13104.0 52 10958.5 53 9299.0 54 8637.0 55 7878.0 56 6303.0 57 4909.0 58 4331.0 59 3822.0 60 3103.0 61 2711.5 62 2530.0 63 2428.0 64 2292.5 65 2240.5 66 2187.0 67 2152.0 68 2128.0 69 2117.5 70 2044.5 71 1958.0 72 1937.0 73 1811.5 74 1646.0 75 1585.0 76 1548.0 77 1321.5 78 1044.0 79 956.0 80 849.5 81 642.0 82 475.0 83 409.0 84 321.0 85 191.0 86 111.5 87 74.0 88 57.0 89 32.0 90 17.0 91 6.5 92 3.0 93 5.0 94 4.5 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 276076.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.66383236944539 #Duplication Level Percentage of deduplicated Percentage of total 1 58.23329942428107 21.35055928411562 2 19.722762725299578 14.462241328454592 3 8.275076227089079 9.101880229031298 4 3.5759834890791438 5.244370367980087 5 1.898977888798986 3.4811903494104666 6 1.1959856358254126 2.630965012090049 7 0.9929880549021451 2.5484723312855717 8 0.775990664486776 2.2760633314398158 9 0.6549921201190596 2.1613069165817556 >10 4.5059457912184495 30.972499694397378 >50 0.15799809920383986 3.7979607037839354 >100 0.008999891726801004 0.6174115093321891 >500 0.0 0.0 >1k 9.99987969644556E-4 1.3550789420972513 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT 3696 1.3387617902316753 No Hit TCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCG 379 0.13728103855460091 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCC 291 0.10540575783479912 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004346629189063881 0.0 2 0.0 0.0 0.0 0.004708848288152537 0.0 3 0.0 0.0 0.0 0.004708848288152537 0.0 4 0.0 0.0 0.0 0.007244381981773135 0.0 5 0.0 0.0 0.0 0.007606601080861791 0.0 6 0.0 0.0 0.0 0.007968820179950448 0.0 7 0.0 0.0 0.0 0.008331039279039104 0.0 8 0.0 0.0 0.0 0.008693258378127762 0.0 9 0.0 0.0 0.0 0.009417696576305075 0.0 10 0.0 0.0 0.0 0.009417696576305075 0.0 11 0.0 0.0 0.0 0.009779915675393732 0.0 12 0.0 0.0 0.0 0.009779915675393732 0.0 13 0.0 0.0 0.0 0.010866572972659702 0.0 14 0.0 0.0 0.0 0.010866572972659702 0.0 15 0.0 0.0 0.0 0.011591011170837016 0.0 16 0.0 0.0 0.0 0.011591011170837016 0.0 17 0.0 0.0 0.0 0.011591011170837016 0.0 18 0.0 0.0 0.0 0.012315449369014329 0.0 19 0.0 0.0 0.0 0.012315449369014329 0.0 20 0.0 0.0 0.0 0.013039887567191643 0.0 21 0.0 0.0 0.0 0.0134021066662803 0.0 22 0.0 0.0 0.0 0.01448876396354627 0.0 23 0.0 0.0 0.0 0.015213202161723583 0.0 24 0.0 0.0 0.0 0.015937640359900897 0.0 25 0.0 0.0 0.0 0.01666207855807821 0.0 26 0.0 0.0 0.0 0.019197612251698807 0.0 27 0.0 0.0 0.0 0.031513061620713136 0.0 28 0.0 0.0 0.0 0.046726263782436724 0.0 29 0.0 0.0 0.0 0.0644749996377809 0.0 30 0.0 0.0 0.0 0.08693258378127762 0.0 31 0.0 0.0 0.0 0.11011460612295165 0.0 32 0.0 0.0 0.0 0.13945435314913285 0.0 33 0.0 0.0 0.0 0.18219620684159435 0.0 34 0.0 0.0 0.0 0.2586244367493009 0.0 35 0.0 0.0 0.0 0.35823468899868155 0.0 36 0.0 0.0 0.0 0.5063823005259421 0.0 37 0.0 0.0 0.0 0.789275416914183 0.0 38 0.0 0.0 0.0 1.106941566814935 0.0 39 0.0 0.0 0.0 1.500673727524305 0.0 40 0.0 0.0 0.0 1.9288167026470973 0.0 41 0.0 0.0 0.0 2.4163636100204293 0.0 42 0.0 0.0 0.0 2.972732146220606 0.0 43 0.0 0.0 0.0 3.6656572827772065 0.0 44 0.0 0.0 0.0 4.372708964198265 0.0 45 0.0 0.0 0.0 5.221026094263898 0.0 46 0.0 0.0 0.0 6.117880583607413 0.0 47 0.0 0.0 0.0 7.036468218896246 0.0 48 0.0 0.0 0.0 7.935133803735203 0.0 49 0.0 0.0 0.0 8.794679725872586 0.0 50 0.0 0.0 0.0 9.534693345310712 0.0 51 0.0 0.0 0.0 10.272533650154305 0.0 52 0.0 0.0 0.0 11.033555977339573 0.0 53 0.0 0.0 0.0 11.807618192092033 0.0 54 0.0 0.0 0.0 12.562845013691883 0.0 55 0.0 0.0 0.0 13.352120430606066 0.0 56 0.0 0.0 0.0 14.182688824816355 0.0 57 0.0 0.0 0.0 15.016879410017532 0.0 58 0.0 0.0 0.0 15.807965922427158 0.0 59 0.0 0.0 0.0 16.575508193396022 0.0 60 0.0 0.0 0.0 17.330010576797694 0.0 61 0.0 0.0 0.0 18.06966197713673 0.0 62 0.0 0.0 0.0 18.77671365855779 0.0 63 0.0 0.0 0.0 19.501151856735103 0.0 64 0.0 0.0 0.0 20.202045813471653 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGCCG 595 0.0 57.058823 43 CGTCTTC 585 0.0 56.837605 48 CGTATGC 605 0.0 56.694214 41 TCGTATG 605 0.0 56.694214 40 CTCGTAT 595 0.0 56.470585 39 GCCGTCT 585 0.0 56.23931 46 CCGTCTT 595 0.0 55.88235 47 ATCTCGT 520 0.0 55.865383 37 TCTCGTA 525 0.0 55.333332 38 TCTTCTG 620 0.0 53.629032 50 ATCCAGC 20 0.0069464697 52.500004 20 GTCGGAT 20 0.0069464697 52.500004 1 ATGCCGT 655 0.0 52.366413 44 GTATGCC 655 0.0 51.83206 42 TGCCGTC 650 0.0 51.692307 45 CTTGAAA 630 0.0 51.666668 57 CTGCTTG 670 0.0 50.149254 54 GTCTTCT 665 0.0 50.0 49 TATCTCG 575 0.0 49.913044 36 TCGTTGT 50 6.178561E-8 48.999996 34 >>END_MODULE