##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781199_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 191257 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.520498596129816 34.0 33.0 34.0 23.0 34.0 2 31.57076603732151 34.0 33.0 34.0 24.0 34.0 3 31.51586608594718 34.0 33.0 34.0 23.0 34.0 4 31.62658098788541 34.0 34.0 34.0 23.0 34.0 5 31.637602806694655 34.0 34.0 34.0 23.0 34.0 6 34.43352138745249 37.0 34.0 38.0 26.0 38.0 7 34.41443711864141 37.0 34.0 38.0 25.0 38.0 8 34.21909263451795 37.0 34.0 38.0 24.0 38.0 9 34.49901964372546 38.0 34.0 38.0 26.0 38.0 10-11 34.34765786350303 38.0 34.0 38.0 24.5 38.0 12-13 34.3060358575111 38.0 34.0 38.0 24.0 38.0 14-15 34.16500311099725 37.0 34.0 38.0 24.0 38.0 16-17 34.14104843221425 37.0 34.0 38.0 23.5 38.0 18-19 34.17700267179764 37.0 34.0 38.0 24.0 38.0 20-21 34.12971289939715 37.0 34.0 38.0 23.5 38.0 22-23 34.187182691352476 37.0 34.0 38.0 24.0 38.0 24-25 34.164882853960904 37.0 34.0 38.0 24.0 38.0 26-27 34.08343485467199 37.0 34.0 38.0 24.0 38.0 28-29 34.150159209858984 37.0 34.0 38.0 24.0 38.0 30-31 34.205124518318286 37.0 34.0 38.0 24.0 38.0 32-33 34.158200745593625 37.0 34.0 38.0 24.0 38.0 34-35 34.18051365440219 37.0 34.0 38.0 24.0 38.0 36-37 34.0391305939129 37.0 34.0 38.0 23.5 38.0 38-39 34.03679603883779 37.0 34.0 38.0 24.0 38.0 40-41 34.05319282431493 37.0 34.0 38.0 23.5 38.0 42-43 34.13526825161955 37.0 34.0 38.0 24.0 38.0 44-45 34.16911276450012 37.0 34.0 38.0 24.0 38.0 46-47 34.16390249768636 37.0 34.0 38.0 24.0 38.0 48-49 34.095034430112364 37.0 34.0 38.0 24.0 38.0 50-51 33.98551425568738 37.0 34.0 38.0 23.5 38.0 52-53 34.08116042811505 37.0 34.0 38.0 24.0 38.0 54-55 34.06839226799542 37.0 34.0 38.0 24.0 38.0 56-57 34.03302101360996 37.0 34.0 38.0 24.0 38.0 58-59 34.017486941654425 37.0 34.0 38.0 24.0 38.0 60-61 33.97332123791547 37.0 34.0 38.0 23.5 38.0 62-63 33.98005563195073 37.0 34.0 38.0 23.5 38.0 64-65 33.98928143806501 37.0 34.0 38.0 23.5 38.0 66-67 33.85998159544488 37.0 34.0 38.0 23.0 38.0 68-69 33.60690066245941 37.0 34.0 38.0 22.5 38.0 70-71 33.752725390443224 37.0 34.0 38.0 23.0 38.0 72-73 33.7177096786 37.0 34.0 38.0 23.0 38.0 74-75 33.65514464830045 37.0 34.0 38.0 22.5 38.0 76 32.296548623056935 37.0 31.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 28.0 14 114.0 15 327.0 16 704.0 17 1182.0 18 1449.0 19 1529.0 20 1424.0 21 1456.0 22 1445.0 23 1740.0 24 1955.0 25 2459.0 26 2884.0 27 3528.0 28 4131.0 29 5046.0 30 6352.0 31 7410.0 32 9393.0 33 11526.0 34 14803.0 35 19635.0 36 29981.0 37 60754.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 45.99622497477217 17.885881301076562 9.86682840366627 26.251065320485 2 23.407770695974524 19.879010964304573 30.754429903219226 25.958788436501674 3 20.200567822354216 21.39372676555629 28.403666271038446 30.002039141051046 4 14.945335334131563 15.77144888814527 35.14172030304773 34.14149547467544 5 14.756061216060065 33.01892218324035 34.867743402855844 17.35727319784374 6 31.471789267843793 34.90486622711849 18.148355354313832 15.474989150723895 7 30.286473174838047 28.166289338429447 21.42196102626309 20.125276460469422 8 26.922936153970834 33.22231343166525 19.328965737201777 20.525784677162143 9 25.252409062151976 16.166728538040438 20.827472981381074 37.753389418426515 10-11 25.969768426776536 23.90840596684043 26.55562933644259 23.566196269940445 12-13 25.99878697250297 22.296438823154187 26.124795432324042 25.5799787720188 14-15 24.00016731413752 23.450644943714476 23.370647871711885 29.178539870436115 16-17 24.13062005573652 26.323219542291266 24.635961036720225 24.91019936525199 18-19 23.739523259279398 25.767945748390908 26.1253182890038 24.36721270332589 20-21 23.60305766586321 26.132638282520375 25.8267671248634 24.43753692675301 22-23 24.03519871168114 25.602723037588166 26.0089826777582 24.353095572972492 24-25 23.557107863000734 25.806181750685596 25.817684627712 24.81902575860167 26-27 23.279932237774304 25.915652760421843 26.144663986154754 24.6597510156491 28-29 23.437050670040836 25.836962830118637 26.81182910952279 23.91415739031774 30-31 23.66370904071485 25.681935824571127 26.21629535128126 24.438059783432763 32-33 23.331956477409975 25.888202784734677 26.11407687038906 24.66576386746629 34-35 23.93141166074967 25.481158859545012 26.362172364933052 24.22525711477227 36-37 24.188657147189385 25.13947201932478 25.981532702071036 24.690338131414798 38-39 23.184772322058798 25.877222794459808 26.741504886095672 24.196499997385718 40-41 23.61011623103991 25.030717829935632 27.127373115755237 24.231792823269213 42-43 22.87497973930366 24.909676508572236 27.20057305092101 25.014770701203094 44-45 22.650674223688544 24.797000894084924 27.412852862901747 25.13947201932478 46-47 22.72361273051444 24.63073246992267 27.772055401893788 24.873599397669103 48-49 22.14925466780301 24.59125679060113 28.23661356185656 25.022874979739303 50-51 21.998410515693543 24.64589531363558 28.126813659107903 25.228880511562974 52-53 21.585615167026567 24.7972623224248 28.5769932603774 25.040129250171233 54-55 21.110077016788928 25.246396210334787 28.295957795008807 25.347568977867475 56-57 20.980931416889316 25.331621849134933 28.339616327768397 25.347830406207354 58-59 21.195880924308454 24.92908737742247 28.05159563204388 25.823436066225202 60-61 21.07948990102323 24.896082234898593 28.039235165248854 25.985192698829323 62-63 20.886555786193448 24.508384006859878 28.250730692209956 26.354329514736712 64-65 21.645220828518692 24.69216812979394 27.565004156710604 26.09760688497676 66-67 21.574112320071944 24.529036845710223 26.992476092378322 26.904374741839515 68-69 21.487318111232533 24.72144810386025 26.701244921754498 27.08998886315272 70-71 21.863832078909738 24.778504259985933 26.57896594364113 26.778697717463196 72-73 21.72730932724031 24.420805513000833 26.562165044939533 27.28972011481933 74-75 21.594242302242534 24.90470937011456 26.433542301719676 27.067506025923233 76 21.936451999142513 24.807980884359786 26.298122421663 26.9574446948347 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 2.0 12 4.0 13 3.0 14 3.0 15 11.5 16 25.0 17 31.0 18 49.5 19 86.5 20 129.0 21 153.0 22 207.5 23 340.5 24 497.5 25 576.0 26 715.0 27 917.0 28 1196.5 29 1413.0 30 1646.5 31 2109.5 32 2819.5 33 3300.0 34 3587.5 35 4436.5 36 5430.5 37 5863.0 38 6387.5 39 7715.0 40 9028.0 41 10047.5 42 10557.0 43 10910.0 44 11230.5 45 11093.0 46 10988.0 47 10901.5 48 10196.5 49 9323.5 50 9069.0 51 8451.0 52 7146.5 53 5951.0 54 5442.0 55 5138.5 56 4490.5 57 3819.5 58 3493.0 59 3239.0 60 2856.5 61 2625.0 62 2522.0 63 2413.5 64 2307.5 65 2275.5 66 2209.0 67 2177.0 68 2087.5 69 1930.5 70 1899.0 71 1935.0 72 1845.5 73 1723.0 74 1622.0 75 1554.0 76 1433.5 77 1198.5 78 973.5 79 863.0 80 772.5 81 587.0 82 429.0 83 366.0 84 303.5 85 192.5 86 121.0 87 98.0 88 79.0 89 43.0 90 21.5 91 11.5 92 6.0 93 6.0 94 3.5 95 1.0 96 1.0 97 0.5 98 0.5 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.614283398777561E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 2.614283398777561E-4 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.614283398777561E-4 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 191257.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.261840262529525 #Duplication Level Percentage of deduplicated Percentage of total 1 69.93253477059791 37.94668030875975 2 15.949806825031699 17.309317403161465 3 6.176089723572629 10.053779820826444 4 2.489547033011967 5.4034961372539865 5 1.2691497709744586 3.4433201070921 6 0.8437642986435732 2.7470522155333703 7 0.6051134264197302 2.2984197659569516 8 0.4693123658528817 2.037260210331111 9 0.3524835409175496 1.7213765033194977 >10 1.8992172647246044 16.590666824607545 >50 0.01298098025298455 0.44863070315775083 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.228566797555122E-4 0.0 5 0.0 0.0 0.0 5.228566797555122E-4 0.0 6 0.0 0.0 0.0 5.228566797555122E-4 0.0 7 0.0 0.0 0.0 5.228566797555122E-4 0.0 8 0.0 0.0 0.0 5.228566797555122E-4 0.0 9 0.0 0.0 0.0 0.0010457133595110244 0.0 10 0.0 0.0 0.0 0.0010457133595110244 0.0 11 0.0 0.0 0.0 0.0010457133595110244 0.0 12 0.0 0.0 0.0 0.0010457133595110244 0.0 13 0.0 0.0 0.0 0.0010457133595110244 0.0 14 0.0 0.0 0.0 0.0015685700392665367 0.0 15 0.0 0.0 0.0 0.0015685700392665367 0.0 16 0.0 0.0 0.0 0.002091426719022049 0.0 17 0.0 0.0 0.0 0.002091426719022049 0.0 18 0.0 0.0 0.0 0.002614283398777561 0.0 19 0.0 0.0 0.0 0.0031371400785330733 0.0 20 0.0 0.0 0.0 0.0031371400785330733 0.0 21 0.0 0.0 0.0 0.0036599967582885856 0.0 22 0.0 0.0 0.0 0.008888563555843708 0.0 23 0.0 0.0 0.0 0.00941142023559922 0.0 24 0.0 0.0 0.0 0.01202570363437678 0.0 25 0.0 0.0 0.0 0.015162843712909855 0.0 26 0.0 0.0 0.0 0.018299983791442927 0.0 27 0.0 0.0 0.0 0.028757117386553174 0.0 28 0.0 0.0 0.0 0.04757995785775161 0.0 29 0.0 0.0 0.0 0.05908280481237288 0.0 30 0.0 0.0 0.0 0.08208849872161542 0.0 31 0.0 0.0 0.0 0.10666276267012449 0.0 32 0.0 0.0 0.0 0.13123702661863357 0.0 33 0.0 0.0 0.0 0.17097413428005248 0.0 34 0.0 0.0 0.0 0.24521978280533524 0.0 35 0.0 0.0 0.0 0.34403969527912703 0.0 36 0.0 0.0 0.0 0.49305384900944804 0.0 37 0.0 0.0 0.0 0.7722593159988915 0.0 38 0.0 0.0 0.0 1.0713333368190445 0.0 39 0.0 0.0 0.0 1.4932786773817428 0.0 40 0.0 0.0 0.0 1.907904024427864 0.0 41 0.0 0.0 0.0 2.419257857228755 5.228566797555122E-4 42 0.0 0.0 0.0 2.97557736448862 5.228566797555122E-4 43 0.0 0.0 0.0 3.6631338983671187 5.228566797555122E-4 44 0.0 0.0 0.0 4.452647484797942 5.228566797555122E-4 45 0.0 0.0 0.0 5.311178152956493 5.228566797555122E-4 46 0.0 0.0 0.0 6.165003110997245 5.228566797555122E-4 47 0.0 0.0 0.0 6.990593808331198 5.228566797555122E-4 48 0.0 0.0 0.0 7.828733065979284 5.228566797555122E-4 49 0.0 0.0 0.0 8.614063798972063 5.228566797555122E-4 50 0.0 0.0 0.0 9.30318890288983 5.228566797555122E-4 51 0.0 0.0 0.0 9.996496860245639 5.228566797555122E-4 52 0.0 0.0 0.0 10.744704768975776 5.228566797555122E-4 53 0.0 0.0 0.0 11.469384127116916 5.228566797555122E-4 54 0.0 0.0 0.0 12.251577720031163 5.228566797555122E-4 55 0.0 0.0 0.0 13.081874127482916 5.228566797555122E-4 56 0.0 0.0 0.0 13.863544863717406 5.228566797555122E-4 57 0.0 0.0 0.0 14.603909922251212 5.228566797555122E-4 58 0.0 0.0 0.0 15.319700716836508 5.228566797555122E-4 59 0.0 0.0 0.0 16.025034377826692 5.228566797555122E-4 60 0.0 0.0 0.0 16.721479475261035 5.228566797555122E-4 61 0.0 0.0 0.0 17.38969031198858 5.228566797555122E-4 62 0.0 0.0 0.0 18.068358282311237 5.228566797555122E-4 63 0.0 0.0 0.0 18.75539195950998 5.228566797555122E-4 64 0.0 0.0 0.0 19.436151356551655 5.228566797555122E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTGC 20 0.0069432235 52.5 62 GTGTTAC 35 0.0012531462 40.0 1 TAGACAC 40 0.0024144112 35.0 5 TGTATAG 40 0.0024144112 35.0 3 GAATAGA 40 0.0024144112 35.0 1 GCATGTA 40 0.0024144112 35.0 2 GGTCCTA 55 2.9841997E-4 31.81818 1 TCCTGAC 45 0.004299574 31.111109 2 TAAGCAC 45 0.004299574 31.111109 20 TTAATGC 60 4.9689563E-4 29.166666 56 GCCTTAC 50 0.0071955845 27.999998 1 TAGACTG 65 7.9349696E-4 26.923077 5 TATAGGA 65 7.9349696E-4 26.923077 5 TTGGACA 70 0.0012228186 25.0 26 ACCCATC 70 0.0012228186 25.0 66 ATTAGGC 105 2.0291285E-5 23.333332 3 GGTCTAG 95 2.7696794E-4 22.105265 1 ACGCCCG 80 0.0026591043 21.875 5 GCTGCTC 80 0.0026591043 21.875 8 CTAGGAC 80 0.0026591043 21.875 3 >>END_MODULE