SRR1781199_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781199_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	178699
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCCGT	3612	2.021276000425296	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCCG	372	0.20817128243582786	No Hit
CTTATACACATCTCCGAGCCCACGAGACTACACCTCACCTCGTATGCCGT	235	0.13150605207639662	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACACCTCATCTCGTATGCC	217	0.12143324808756625	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	560	0.0	56.875	43
TCGTATG	550	0.0	56.636364	40
ATCTCGT	460	0.0	56.304344	37
TCTCGTA	460	0.0	56.304344	38
CTCGTAT	535	0.0	56.261684	39
CGTATGC	560	0.0	56.25	41
CCGTCTT	540	0.0	55.09259	47
GCCGTCT	550	0.0	54.727272	46
CATCTCG	475	0.0	54.526318	36
TGCCGTC	585	0.0	53.247864	45
GTATGCC	600	0.0	53.083332	42
CGTCTTC	550	0.0	52.818184	48
ATGCCGT	585	0.0	52.649574	44
CCGCGAT	20	0.006942477	52.500004	29
TTGAAAA	540	0.0	51.851852	58
GTCTTCT	565	0.0	50.79646	49
CTGCTTG	570	0.0	49.736843	54
CTTGAAA	550	0.0	49.636364	57
TCATCTC	530	0.0	49.5283	35
TCTTCTG	605	0.0	48.01653	50