##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781198_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 247234 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.809625698730756 34.0 32.0 34.0 21.0 34.0 2 30.98044362830355 34.0 32.0 34.0 21.0 34.0 3 31.03479699394096 34.0 32.0 34.0 23.0 34.0 4 31.137189868707377 34.0 32.0 34.0 23.0 34.0 5 31.160584709222842 34.0 32.0 34.0 23.0 34.0 6 33.951014019107404 37.0 34.0 38.0 23.0 38.0 7 33.92833509954133 37.0 34.0 38.0 24.0 38.0 8 33.70638747097891 37.0 34.0 38.0 23.0 38.0 9 34.00605094768519 37.0 34.0 38.0 24.0 38.0 10-11 33.83176262164589 37.0 34.0 38.0 23.0 38.0 12-13 33.80865293608484 37.0 34.0 38.0 23.0 38.0 14-15 33.66233406408503 37.0 34.0 38.0 22.0 38.0 16-17 33.618141113277304 37.0 34.0 38.0 22.0 38.0 18-19 33.670929160228766 37.0 34.0 38.0 22.0 38.0 20-21 33.62032325651003 37.0 34.0 38.0 22.0 38.0 22-23 33.669129245977494 37.0 34.0 38.0 22.5 38.0 24-25 33.663602093563185 37.0 34.0 38.0 22.5 38.0 26-27 33.5965138290041 37.0 34.0 38.0 22.0 38.0 28-29 33.67761715621638 37.0 34.0 38.0 22.5 38.0 30-31 33.75346837409094 37.0 34.0 38.0 23.0 38.0 32-33 33.6953655241593 37.0 34.0 38.0 22.5 38.0 34-35 33.74162332041709 37.0 34.0 38.0 22.5 38.0 36-37 33.582341021056976 37.0 34.0 38.0 22.0 38.0 38-39 33.59626305443426 37.0 34.0 38.0 22.0 38.0 40-41 33.57538404911946 37.0 34.0 38.0 22.0 38.0 42-43 33.66215609503547 37.0 34.0 38.0 22.5 38.0 44-45 33.674395511944155 37.0 34.0 38.0 22.5 38.0 46-47 33.654230405203165 37.0 34.0 38.0 22.5 38.0 48-49 33.62207665612335 37.0 34.0 38.0 22.0 38.0 50-51 33.483325513481155 37.0 34.0 38.0 22.0 38.0 52-53 33.56069351302814 37.0 34.0 38.0 22.0 38.0 54-55 33.53083516021259 37.0 34.0 38.0 22.0 38.0 56-57 33.520694969138546 37.0 34.0 38.0 22.0 38.0 58-59 33.510661963969355 37.0 34.0 38.0 22.0 38.0 60-61 33.48364504882015 37.0 34.0 38.0 22.0 38.0 62-63 33.476030804824575 37.0 34.0 38.0 22.0 38.0 64-65 33.469565270148934 37.0 34.0 38.0 22.0 38.0 66-67 33.36765574314212 37.0 34.0 38.0 21.0 38.0 68-69 33.1516215407266 37.0 33.5 38.0 21.0 38.0 70-71 33.293125136510355 37.0 34.0 38.0 21.0 38.0 72-73 33.25091006900345 37.0 33.0 38.0 21.0 38.0 74-75 33.22712491000429 37.0 33.0 38.0 21.0 38.0 76 31.888397226918627 36.0 30.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 8.0 13 37.0 14 96.0 15 331.0 16 675.0 17 1435.0 18 1986.0 19 2305.0 20 2423.0 21 2571.0 22 2774.0 23 3209.0 24 3644.0 25 4214.0 26 4974.0 27 5708.0 28 6545.0 29 7791.0 30 9030.0 31 10562.0 32 12596.0 33 14844.0 34 18166.0 35 23244.0 36 34960.0 37 73106.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.09101498984767 17.927145942710148 9.069140975755762 25.91269809168642 2 23.643188234627925 19.98996901720637 31.58384364610046 24.78299910206525 3 20.042146306737745 21.71384194730498 29.61526327285082 28.62874847310645 4 14.045398286643424 16.1628255013469 36.37687373095934 33.41490248105034 5 14.19303170275933 33.050874879668655 36.125290210893326 16.630803206678692 6 30.33846477426244 37.07580672561217 18.10147471626071 14.484253783864679 7 29.38188113285389 29.085400875284144 21.823859177944783 19.70885881391718 8 26.246390059619635 34.032940453173914 19.58144915343359 20.139220333772865 9 25.119926870899633 15.954520818334048 21.18559745018889 37.73995486057743 10-11 25.468786655557086 24.11723306664941 27.690366211766992 22.723614066026517 12-13 25.516312481293024 22.48760283779739 26.861798943511005 25.134285737398578 14-15 23.512138298130516 23.826213223100382 24.10894132684016 28.552707151928942 16-17 23.76008154218271 26.850271402800587 25.128623085821527 24.261023969195175 18-19 23.155593486332787 26.39159662505966 26.623563102162322 23.82924678644523 20-21 23.251049612917317 26.541252416738796 26.49858029235461 23.709117677989273 22-23 23.633480831924413 26.308679226967165 26.515972722198406 23.54186721891002 24-25 23.50789130944773 26.083184351666844 26.28663533332794 24.122289005557487 26-27 22.785498758261404 26.350340163569737 26.747130249075774 24.117030829093085 28-29 23.077529789592045 26.42112330828284 27.293171651148306 23.208175250976808 30-31 23.177232904859363 26.40635996667125 26.83287897295679 23.583528155512592 32-33 22.84273198670086 26.56895896195507 26.72124384186641 23.867065209477662 34-35 23.805180517242775 25.909462290785246 26.849462452575295 23.435894739396684 36-37 23.69354538615239 25.769716139365944 26.30524118850967 24.231497285971994 38-39 22.69509857058495 26.421932258508136 27.3402930017716 23.542676169135312 40-41 23.165503126592622 25.49487530032277 27.744768114417923 23.594853458666687 42-43 22.878528034170056 25.868812541964292 27.186390221409678 24.066269202455974 44-45 22.368889392235697 25.486179085400874 27.714836956082088 24.430094566281337 46-47 22.549285292475954 25.267155811902892 27.898266419667202 24.285292475953955 48-49 21.986053698115953 25.290210893323735 28.39718647111643 24.326548937443878 50-51 22.08292548759475 25.238235841348683 28.158546154655106 24.520292516401465 52-53 21.684113026525477 25.019414805407024 28.728047113261123 24.56842505480638 54-55 21.09782635074464 25.707831447131056 28.54037066099323 24.653971541131074 56-57 21.163351318993342 25.57051214638763 28.460284588689255 24.805851945929767 58-59 21.170429633464654 25.498920051449236 28.318516061706724 25.012134253379394 60-61 20.833704102186594 25.555951042332364 28.54562883745763 25.064716018023407 62-63 20.692340050316705 25.3955766601681 28.442689921289144 25.46939336822605 64-65 21.425855667100805 25.28859299287315 27.950039234085928 25.335512105940122 66-67 21.343342744120957 25.19192344095068 27.598145886083632 25.866587928844737 68-69 21.116027730813723 25.373330528972556 27.217534805083442 26.293106935130282 70-71 21.656608718865527 25.279896777951254 27.102259397979246 25.96123510520398 72-73 21.323523463601283 24.927194479723664 27.33200126196235 26.4172807947127 74-75 21.479650857082763 25.08493977365573 27.127943567632286 26.307465801629228 76 21.527783395487678 25.17655338667012 26.584126778679305 26.7115364391629 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.5 3 0.5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 1.5 11 3.5 12 5.0 13 7.5 14 16.0 15 27.5 16 43.5 17 54.0 18 85.5 19 158.5 20 269.5 21 339.0 22 382.0 23 588.0 24 855.0 25 959.0 26 1200.0 27 1511.0 28 1856.5 29 2132.0 30 2414.0 31 3045.0 32 3963.0 33 4532.0 34 5016.0 35 6146.5 36 7557.0 37 8321.0 38 9027.0 39 10498.5 40 12066.5 41 13354.0 42 13839.0 43 13959.0 44 14233.0 45 14408.0 46 14429.0 47 14207.0 48 13258.0 49 12067.5 50 11604.0 51 10931.0 52 9257.0 53 7764.0 54 7272.0 55 6888.0 56 6003.5 57 5187.0 58 4871.0 59 4428.0 60 3705.5 61 3289.5 62 3153.0 63 3023.0 64 2748.0 65 2467.0 66 2275.0 67 2219.0 68 2149.5 69 2063.5 70 1977.5 71 1908.0 72 1866.5 73 1761.5 74 1585.5 75 1473.0 76 1338.0 77 1093.5 78 899.5 79 815.0 80 718.5 81 535.5 82 376.0 83 303.0 84 256.0 85 173.0 86 109.5 87 82.0 88 64.5 89 33.5 90 16.0 91 8.0 92 4.0 93 4.0 94 3.5 95 2.0 96 1.0 97 0.5 98 1.0 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 247234.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.020811444842224 #Duplication Level Percentage of deduplicated Percentage of total 1 73.31292536897432 41.070495685651 2 13.950352632794027 15.630201488616247 3 5.560860647961585 9.345717774914972 4 2.3889505239488416 5.353237874127803 5 1.1615685348568998 3.2536005935740007 6 0.6783084214971697 2.2799632909284906 7 0.47792596162340006 1.8741660126489577 8 0.38593577985604727 1.729634844250701 9 0.29266025546181934 1.475555848976334 >10 1.7688350923219707 17.214289881951085 >50 0.021676780703913698 0.7731367043604079 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.044751126463189E-4 0.0 3 0.0 0.0 0.0 4.044751126463189E-4 0.0 4 0.0 0.0 0.0 0.0016179004505852755 0.0 5 0.0 0.0 0.0 0.0016179004505852755 0.0 6 0.0 0.0 0.0 0.0016179004505852755 0.0 7 0.0 0.0 0.0 0.0016179004505852755 0.0 8 0.0 0.0 0.0 0.0016179004505852755 4.044751126463189E-4 9 0.0 0.0 0.0 0.002426850675877913 4.044751126463189E-4 10 0.0 0.0 0.0 0.002831325788524232 4.044751126463189E-4 11 0.0 0.0 0.0 0.003235800901170551 4.044751126463189E-4 12 0.0 0.0 0.0 0.003235800901170551 4.044751126463189E-4 13 0.0 0.0 0.0 0.004449226239109508 4.044751126463189E-4 14 0.0 0.0 0.0 0.004449226239109508 8.089502252926377E-4 15 0.0 0.0 0.0 0.004449226239109508 8.089502252926377E-4 16 0.0 0.0 0.0 0.004449226239109508 8.089502252926377E-4 17 0.0 0.0 0.0 0.004449226239109508 8.089502252926377E-4 18 0.0 0.0 0.0 0.004853701351755826 8.089502252926377E-4 19 0.0 0.0 0.0 0.005258176464402145 8.089502252926377E-4 20 0.0 0.0 0.0 0.005662651577048464 8.089502252926377E-4 21 0.0 0.0 0.0 0.006067126689694783 0.0012134253379389565 22 0.0 0.0 0.0 0.009707402703511652 0.0012134253379389565 23 0.0 0.0 0.0 0.011325303154096928 0.0012134253379389565 24 0.0 0.0 0.0 0.012943203604682204 0.0012134253379389565 25 0.0 0.0 0.0 0.01456110405526748 0.0012134253379389565 26 0.0 0.0 0.0 0.016583479618499073 0.0012134253379389565 27 0.0 0.0 0.0 0.026695357434657046 0.0012134253379389565 28 0.0 0.0 0.0 0.03518933480022974 0.0012134253379389565 29 0.0 0.0 0.0 0.04691911306697299 0.0012134253379389565 30 0.0 0.0 0.0 0.06067126689694783 0.0012134253379389565 31 0.0 0.0 0.0 0.07401894561427635 0.0012134253379389565 32 0.0 0.0 0.0 0.0942427012465923 0.0012134253379389565 33 0.0 0.0 0.0 0.13347678717328523 0.0012134253379389565 34 0.0 0.0 0.0 0.19212567850700146 0.0012134253379389565 35 0.0 0.0 0.0 0.2677625245718631 0.0012134253379389565 36 0.0 0.0 0.0 0.39881246106927043 0.0012134253379389565 37 0.0 0.0 0.0 0.6192513974615141 0.0012134253379389565 38 0.0 0.0 0.0 0.8720483428654635 0.0012134253379389565 39 0.0 0.0 0.0 1.179449428476666 0.0012134253379389565 40 0.0 0.0 0.0 1.5236577493386831 0.0012134253379389565 41 0.0 0.0 0.0 1.8804047986927364 0.0012134253379389565 42 0.0 0.0 0.0 2.2771948841987752 0.0012134253379389565 43 0.0 0.0 0.0 2.7520486664455537 0.0012134253379389565 44 0.0 0.0 0.0 3.3037527200951327 0.0012134253379389565 45 0.0 0.0 0.0 3.9796306333271314 0.0012134253379389565 46 0.0 0.0 0.0 4.721842465033126 0.0012134253379389565 47 0.0 0.0 0.0 5.4648632469644145 0.0012134253379389565 48 0.0 0.0 0.0 6.208288504008348 0.0012134253379389565 49 0.0 0.0 0.0 6.929872104969381 0.0012134253379389565 50 0.0 0.0 0.0 7.578650185654077 0.0012134253379389565 51 0.0 0.0 0.0 8.205182135143225 0.0012134253379389565 52 0.0 0.0 0.0 8.81432165478858 0.0012134253379389565 53 0.0 0.0 0.0 9.441258079390375 0.0012134253379389565 54 0.0 0.0 0.0 10.064958703091 0.0012134253379389565 55 0.0 0.0 0.0 10.785733353826739 0.0012134253379389565 56 0.0 0.0 0.0 11.515001981928052 0.0012134253379389565 57 0.0 0.0 0.0 12.20099177297621 0.0012134253379389565 58 0.0 0.0 0.0 12.844107202083856 0.0012134253379389565 59 0.0 0.0 0.0 13.531714893582597 0.0012134253379389565 60 0.0 0.0 0.0 14.172403472014366 0.0012134253379389565 61 0.0 0.0 0.0 14.754847634225067 0.0012134253379389565 62 0.0 0.0 0.0 15.336887321323118 0.0012134253379389565 63 0.0 0.0 0.0 15.938341813828195 0.0012134253379389565 64 0.0 0.0 0.0 16.506224871983626 0.0012134253379389565 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCGTA 25 2.3873545E-4 56.000004 33 GTCGCAG 20 0.0069456166 52.5 28 TTTCGGA 20 0.0069456166 52.5 25 CGAATTG 20 0.0069456166 52.5 47 CTCTTGA 40 4.5842964E-5 43.75 2 CTATCGT 35 0.0012538576 40.000004 32 ATTTCGG 35 0.0012538576 40.000004 48 CAGTCGC 45 9.180954E-5 38.88889 44 GTACCTA 40 0.0024157742 35.0 1 AATTTCG 40 0.0024157742 35.0 47 ACGTTTA 40 0.0024157742 35.0 26 CGACCCT 40 0.0024157742 35.0 10 GGTCTAT 40 0.0024157742 35.0 1 CTTACGT 40 0.0024157742 35.0 23 AATGCGG 45 0.0043019853 31.111113 42 GCTGTCG 45 0.0043019853 31.111113 54 AGGTGAC 45 0.0043019853 31.111113 7 GAATGCG 50 0.0071995957 28.000002 41 ATCGGTT 50 0.0071995957 28.000002 25 GACTATC 50 0.0071995957 28.000002 38 >>END_MODULE