##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781198_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 221588 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.3179865335668 34.0 34.0 34.0 33.0 34.0 2 33.32937252919833 34.0 34.0 34.0 33.0 34.0 3 33.39498528801199 34.0 34.0 34.0 34.0 34.0 4 33.45934346625268 34.0 34.0 34.0 34.0 34.0 5 33.45833258118671 34.0 34.0 34.0 34.0 34.0 6 36.90614563965558 38.0 37.0 38.0 35.0 38.0 7 36.80307146596386 38.0 37.0 38.0 34.0 38.0 8 36.588628445583694 38.0 37.0 38.0 34.0 38.0 9 36.55808076249616 38.0 37.0 38.0 34.0 38.0 10-11 36.48868395400473 38.0 37.0 38.0 34.0 38.0 12-13 36.43435565102803 38.0 37.0 38.0 34.0 38.0 14-15 36.43960187374768 38.0 37.0 38.0 34.0 38.0 16-17 36.374792407531096 38.0 37.0 38.0 34.0 38.0 18-19 36.3587874794664 38.0 37.0 38.0 34.0 38.0 20-21 36.31856869505569 38.0 37.0 38.0 34.0 38.0 22-23 36.38065012545806 38.0 37.0 38.0 34.0 38.0 24-25 36.36790124013936 38.0 37.0 38.0 34.0 38.0 26-27 36.16309773092405 38.0 37.0 38.0 33.5 38.0 28-29 36.138376175605174 38.0 37.0 38.0 34.0 38.0 30-31 36.17804664512519 38.0 37.0 38.0 34.0 38.0 32-33 36.13862889687167 38.0 37.0 38.0 33.5 38.0 34-35 36.122554019170714 38.0 37.0 38.0 33.5 38.0 36-37 36.0775019405383 38.0 37.0 38.0 32.5 38.0 38-39 35.917522609527595 38.0 37.0 38.0 32.0 38.0 40-41 36.01765664205643 38.0 37.0 38.0 32.0 38.0 42-43 36.075349296893336 38.0 37.0 38.0 32.5 38.0 44-45 36.05844630575663 38.0 37.0 38.0 32.5 38.0 46-47 36.080922703395494 38.0 37.0 38.0 33.0 38.0 48-49 36.05787768290702 38.0 37.0 38.0 32.5 38.0 50-51 35.9468337635612 38.0 37.0 38.0 32.0 38.0 52-53 35.96705597776053 38.0 37.0 38.0 32.0 38.0 54-55 35.98332265285124 38.0 37.0 38.0 32.0 38.0 56-57 35.959616495478095 38.0 37.0 38.0 32.0 38.0 58-59 35.932151109265845 38.0 37.0 38.0 32.0 38.0 60-61 35.94074363232666 38.0 37.0 38.0 32.0 38.0 62-63 35.90608471577883 38.0 37.0 38.0 32.0 38.0 64-65 35.87680740834341 38.0 37.0 38.0 32.0 38.0 66-67 35.83610348935863 38.0 37.0 38.0 31.0 38.0 68-69 35.74192645811145 38.0 36.5 38.0 31.0 38.0 70-71 35.584167463942094 38.0 36.0 38.0 31.0 38.0 72-73 35.442648067584884 38.0 36.0 38.0 31.0 38.0 74-75 35.469244724443556 38.0 36.0 38.0 31.0 38.0 76 34.592378648663285 37.0 35.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 3.0 21 9.0 22 20.0 23 62.0 24 147.0 25 310.0 26 559.0 27 1078.0 28 1767.0 29 2844.0 30 4304.0 31 6264.0 32 9152.0 33 12647.0 34 17137.0 35 24255.0 36 36641.0 37 104389.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.36572377565572 18.02940592450855 9.148961135079517 27.455909164756214 2 23.21966893514089 20.313374370453275 31.80000722060761 24.66694947379822 3 19.93293860678376 21.803527266819504 30.547231799555934 27.716302326840804 4 14.069353936133725 17.860624221528244 35.909435528999765 32.16058631333827 5 13.617614672274673 33.777099842951785 36.72807191725184 15.877213567521705 6 30.196581042294707 38.6677076375977 17.286134628228965 13.849576691878621 7 28.63377078181129 29.134700435041612 21.342310955466903 20.8892178276802 8 25.257234146253403 36.06964276043829 18.92792028449194 19.745202808816362 9 24.57037384695922 15.822607722439844 20.288102243803817 39.31891618679712 10-11 24.906583388992185 25.22925429174865 27.64071159088037 22.223450728378793 12-13 24.962543098001696 22.563721862194704 26.891799194902248 25.58193584490135 14-15 22.847130711049335 23.377845370687943 23.412143256855064 30.362880661407658 16-17 24.427315558604256 27.55519251945051 24.257405635684243 23.76008628626099 18-19 23.94556564434897 26.386807949888986 25.350425113273285 24.317201292488765 20-21 22.848710218964925 26.254806216943155 25.260393162084586 25.636090402007326 22-23 22.865633518060545 26.820495694712708 25.7775691824467 24.536301604780043 24-25 24.072828853548025 27.024703503799845 25.475657526580864 23.426810116071266 26-27 23.152201382746355 27.390923696229034 25.863539541852447 23.593335379172157 28-29 22.794781305846886 26.001408018484756 26.28842717114645 24.915383504521905 30-31 22.90895716374533 25.69746556672744 26.873296387891045 24.52028088163619 32-33 23.315341986028123 26.165451197718287 26.148076610646786 24.371130205606804 34-35 23.48119031716519 26.60455439825261 25.8030669530841 24.111188331498095 36-37 24.21836922577035 26.892024838890194 25.49235518168854 23.39725075365092 38-39 22.47188475910248 26.378459122335148 27.13933064967417 24.010325468888208 40-41 22.45338195209127 25.48648843800206 27.849432279726337 24.210697330180334 42-43 23.631469213134285 25.464600971171723 27.23748578442876 23.66644403126523 44-45 21.97727313753452 26.543630521508383 27.819647273318047 23.65944906763904 46-47 23.190109572720544 25.07807281982779 26.956333375453546 24.775484231998124 48-49 22.67135404444284 24.774356012058416 27.432442190010285 25.121847753488456 50-51 21.654602234778057 25.15366355578822 28.305910067332167 24.88582414210156 52-53 21.187067891763093 24.726068198638913 30.007040092423775 24.079823817174216 54-55 20.427324584363774 25.307552755564384 28.942903045291263 25.322219614780582 56-57 21.431891618679714 25.311839991335273 27.715399750889034 25.540868639095983 58-59 20.54759282993664 25.011507843385022 29.550111016842067 24.890788309836275 60-61 21.33328519594924 26.256611368846688 27.521571565247214 24.888531869956857 62-63 19.734371897395167 27.373549109157537 27.336769139123057 25.555309854324243 64-65 20.01958589815333 27.81468310558333 26.537086845858077 25.628644150405254 66-67 19.934969402675236 27.738866725634963 26.16274346986299 26.163420401826816 68-69 20.091566330306694 27.78286730328357 25.78749751791613 26.338068848493602 70-71 20.597234507283787 27.08404787262848 25.46572919111143 26.8529884289763 72-73 20.26621477697348 25.813220932541476 25.688214163221833 28.23235012726321 74-75 20.351508204415403 25.679188403704174 25.63315703016409 28.33614636171634 76 20.874776612451935 25.58757694459989 25.407964330198386 28.129682112749787 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 2.0 12 4.0 13 5.5 14 9.5 15 20.0 16 39.0 17 50.0 18 80.0 19 149.5 20 238.0 21 287.0 22 337.0 23 525.0 24 765.0 25 867.0 26 1063.5 27 1437.5 28 1819.5 29 2024.0 30 2223.0 31 2695.0 32 3462.5 33 3957.0 34 4422.0 35 5374.5 36 6586.0 37 7310.0 38 7661.0 39 8935.0 40 10551.0 41 11606.5 42 11969.0 43 12433.0 44 13165.5 45 13688.5 46 13943.0 47 13439.5 48 12408.0 49 11153.5 50 10427.0 51 9670.5 52 8021.5 53 6762.5 54 6396.0 55 6071.0 56 5155.0 57 4390.0 58 4216.0 59 3761.0 60 3105.0 61 2815.0 62 2726.0 63 2598.5 64 2387.0 65 2314.5 66 2285.5 67 2245.0 68 2120.0 69 1982.5 70 1905.5 71 1841.0 72 1763.0 73 1621.5 74 1457.5 75 1357.0 76 1213.5 77 962.0 78 824.5 79 795.0 80 693.0 81 503.5 82 364.5 83 313.0 84 236.5 85 141.5 86 89.5 87 56.0 88 43.0 89 21.0 90 6.5 91 1.5 92 2.0 93 2.5 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 221588.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.205299869356644 #Duplication Level Percentage of deduplicated Percentage of total 1 59.46999999999998 26.883591832306386 2 21.23699999999999 19.20049906651053 3 8.797999999999996 11.931486847517988 4 3.6249999999999982 6.554768481056711 5 1.7069999999999992 3.858272343849588 6 1.0030000000000499 2.7204549461380183 7 0.6799999999999999 2.151772273781376 8 0.5319999999999997 1.9239375624398178 9 0.4209999999999998 1.7128288120499224 >10 2.483999999999999 19.814839091735088 >50 0.03599999999999998 1.0225438830448468 >100 0.0059999999999999975 0.6057510182493788 >500 0.0 0.0 >1k 9.999999999999996E-4 1.6192538413203543 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCCTCGCAGATCTCGTATGCCGT 3582 1.616513529613517 No Hit TCTTATACACATCTCCGAGCCCACGAGACCCTCGCAGATCTCGTATGCCG 419 0.18908966189504847 No Hit CTTATACACATCTCCGAGCCCACGAGACCCTCGCAGACCTCGTATGCCGT 285 0.12861707312670362 No Hit CTCTTATACACATCTCCGAGCCCACGAGACCCTCGCAGATCTCGTATGCC 248 0.11191941801902631 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.512879758831706E-4 0.0 3 0.0 0.0 0.0 4.512879758831706E-4 0.0 4 0.0 0.0 0.0 0.0018051519035326823 0.0 5 0.0 0.0 0.0 0.0018051519035326823 0.0 6 0.0 0.0 0.0 0.0018051519035326823 0.0 7 0.0 0.0 0.0 0.0018051519035326823 0.0 8 0.0 0.0 0.0 0.0018051519035326823 0.0 9 0.0 0.0 0.0 0.0027077278552990235 0.0 10 0.0 0.0 0.0 0.0027077278552990235 0.0 11 0.0 0.0 0.0 0.003159015831182194 0.0 12 0.0 0.0 0.0 0.003159015831182194 0.0 13 0.0 0.0 0.0 0.004061591782948535 0.0 14 0.0 0.0 0.0 0.004061591782948535 0.0 15 0.0 0.0 0.0 0.004061591782948535 0.0 16 0.0 0.0 0.0 0.004512879758831706 0.0 17 0.0 0.0 0.0 0.004512879758831706 0.0 18 0.0 0.0 0.0 0.004964167734714876 0.0 19 0.0 0.0 0.0 0.005415455710598047 0.0 20 0.0 0.0 0.0 0.005866743686481217 0.0 21 0.0 0.0 0.0 0.006318031662364388 0.0 22 0.0 0.0 0.0 0.007220607614130729 0.0 23 0.0 0.0 0.0 0.00857447154178024 0.0 24 0.0 0.0 0.0 0.009025759517663412 0.0 25 0.0 0.0 0.0 0.012184775348845605 0.0 26 0.0 0.0 0.0 0.014441215228261459 0.0 27 0.0 0.0 0.0 0.02482083867357438 0.0 28 0.0 0.0 0.0 0.03565175009477047 0.0 29 0.0 0.0 0.0 0.050544253298915105 0.0 30 0.0 0.0 0.0 0.0658880444789429 0.0 31 0.0 0.0 0.0 0.08258569958662021 0.0 32 0.0 0.0 0.0 0.1028936585013629 0.0 33 0.0 0.0 0.0 0.14937632001732945 0.0 34 0.0 0.0 0.0 0.21661822842392187 0.0 35 0.0 0.0 0.0 0.3064245356246728 0.0 36 0.0 0.0 0.0 0.4558008556420023 0.0 37 0.0 0.0 0.0 0.7080708341606946 0.0 38 0.0 0.0 0.0 0.9833564994494287 0.0 39 0.0 0.0 0.0 1.3168583136270917 0.0 40 0.0 0.0 0.0 1.698647941224254 0.0 41 0.0 0.0 0.0 2.0885607523873135 0.0 42 0.0 0.0 0.0 2.510966297813961 0.0 43 0.0 0.0 0.0 3.0326551979349063 0.0 44 0.0 0.0 0.0 3.6360272216907052 0.0 45 0.0 0.0 0.0 4.359441847031428 0.0 46 0.0 0.0 0.0 5.161831868151705 0.0 47 0.0 0.0 0.0 5.957452569633735 0.0 48 0.0 0.0 0.0 6.749914255284582 0.0 49 0.0 0.0 0.0 7.515749950358322 0.0 50 0.0 0.0 0.0 8.211184721194288 0.0 51 0.0 0.0 0.0 8.882249941332564 0.0 52 0.0 0.0 0.0 9.543386826001408 0.0 53 0.0 0.0 0.0 10.201815982814955 0.0 54 0.0 0.0 0.0 10.863404155459682 0.0 55 0.0 0.0 0.0 11.628337274581655 0.0 56 0.0 0.0 0.0 12.405003881076592 0.0 57 0.0 0.0 0.0 13.148726465332057 0.0 58 0.0 0.0 0.0 13.840099644385075 0.0 59 0.0 0.0 0.0 14.578406772929942 0.0 60 0.0 0.0 0.0 15.258046464609997 0.0 61 0.0 0.0 0.0 15.875408415618175 0.0 62 0.0 0.0 0.0 16.47517013556691 0.0 63 0.0 0.0 0.0 17.11599906132101 0.0 64 0.0 0.0 0.0 17.714858205317977 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGCAC 15 0.002222528 70.00001 34 GAGACGA 20 7.9145204E-5 70.0 53 CGAGAAT 20 7.9145204E-5 70.0 14 ACTCGTA 35 2.9649345E-7 60.0 38 TCCGGAT 20 0.0069446694 52.5 3 GTCTATA 20 0.0069446694 52.5 1 AGCGCAC 20 0.0069446694 52.5 24 ACGGTAA 20 0.0069446694 52.5 13 TATGCCG 630 0.0 51.666664 43 CGTATGC 635 0.0 51.259842 41 TCGTATG 640 0.0 50.859375 40 CTCGTAT 620 0.0 50.241936 39 TCTCGTA 555 0.0 49.819817 38 GTATGCC 650 0.0 49.538464 42 TGCCGTC 650 0.0 49.538464 45 ATGCCGT 655 0.0 49.16031 44 CCGTCTT 635 0.0 49.05512 47 GCCGTCT 645 0.0 48.83721 46 ATCTCGT 560 0.0 48.75 37 TCGCAGA 685 0.0 48.029198 31 >>END_MODULE