##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781197_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 108833 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.613913059458067 34.0 32.0 34.0 21.0 34.0 2 30.76240662299119 34.0 32.0 34.0 21.0 34.0 3 30.72904358053164 34.0 32.0 34.0 21.0 34.0 4 30.86325838670256 34.0 32.0 34.0 21.0 34.0 5 30.772403590822638 34.0 32.0 34.0 21.0 34.0 6 33.440280062113516 37.0 34.0 38.0 21.0 38.0 7 33.44526016925013 37.0 34.0 38.0 21.0 38.0 8 33.185973004511496 37.0 34.0 38.0 21.0 38.0 9 33.56781490908089 37.0 34.0 38.0 21.0 38.0 10-11 33.36729668391021 37.0 34.0 38.0 21.0 38.0 12-13 33.322278169305264 37.0 34.0 38.0 21.0 38.0 14-15 33.17665138331205 37.0 34.0 38.0 21.0 38.0 16-17 33.114588406090064 37.0 33.5 38.0 21.0 38.0 18-19 33.14547058337085 37.0 34.0 38.0 21.0 38.0 20-21 33.064355480414946 37.0 33.5 38.0 21.0 38.0 22-23 33.11735411134491 37.0 33.5 38.0 21.0 38.0 24-25 33.109098343333365 37.0 33.5 38.0 21.0 38.0 26-27 33.05400475958579 37.0 33.0 38.0 21.0 38.0 28-29 33.1179927044187 37.0 34.0 38.0 21.0 38.0 30-31 33.14001727417235 37.0 34.0 38.0 21.0 38.0 32-33 33.12041843926015 37.0 33.5 38.0 21.0 38.0 34-35 33.149858039381435 37.0 34.0 38.0 21.0 38.0 36-37 33.00159877978187 37.0 33.5 38.0 21.0 38.0 38-39 32.96247002287909 37.0 33.0 38.0 21.0 38.0 40-41 33.00390506555916 37.0 33.5 38.0 21.0 38.0 42-43 33.06636314353183 37.0 33.5 38.0 21.0 38.0 44-45 33.1270800216846 37.0 34.0 38.0 21.0 38.0 46-47 33.10213354405373 37.0 34.0 38.0 21.0 38.0 48-49 33.035719864379374 37.0 33.5 38.0 21.0 38.0 50-51 32.90356785166264 37.0 32.5 38.0 21.0 38.0 52-53 32.97430926281551 37.0 33.0 38.0 21.0 38.0 54-55 32.96893864912297 37.0 33.0 38.0 21.0 38.0 56-57 32.91773175415545 37.0 33.0 38.0 20.5 38.0 58-59 32.92601508733564 37.0 32.5 38.0 21.0 38.0 60-61 32.89448972278629 37.0 32.5 38.0 20.5 38.0 62-63 32.849843337958156 37.0 32.0 38.0 19.5 38.0 64-65 32.84800566004796 37.0 32.0 38.0 19.5 38.0 66-67 32.73804360809681 37.0 32.0 38.0 14.5 38.0 68-69 32.50646862624388 37.0 31.0 38.0 13.5 38.0 70-71 32.605280567474935 37.0 31.0 38.0 11.0 38.0 72-73 32.583494895849604 37.0 31.0 38.0 11.0 38.0 74-75 32.53650087749121 37.0 31.0 38.0 11.0 38.0 76 31.1182729503 36.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 7.0 13 30.0 14 137.0 15 376.0 16 840.0 17 1465.0 18 1861.0 19 1937.0 20 1642.0 21 1375.0 22 1282.0 23 1288.0 24 1480.0 25 1626.0 26 1882.0 27 2254.0 28 2677.0 29 3171.0 30 3666.0 31 4286.0 32 5171.0 33 6269.0 34 7627.0 35 9964.0 36 15076.0 37 31443.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 44.89263366809699 18.284895206417172 9.679049552984848 27.143421572500987 2 23.184144514990855 18.547683147574727 31.59427747098766 26.67389486644676 3 20.71522424264699 20.30082787389854 27.886762287173926 31.09718559628054 4 15.563294221421812 15.188407927742503 33.83165032664725 35.41664752418844 5 15.452114707855156 32.060128821221504 33.720470813080595 18.76728565784275 6 32.26043571343251 33.824299615006474 16.69806033096579 17.217204340595224 7 30.774673123041723 26.32473606351015 21.184750948701218 21.715839864746904 8 26.551689285418945 32.1115838027069 19.400365697904128 21.936361213970027 9 25.079709279354606 14.034346200141501 20.456111657309823 40.42983286319407 10-11 27.41907325902989 22.277250466310768 25.926878795953435 24.376797478705907 12-13 26.20115222404969 20.85121240800125 25.03928036533037 27.90835500261869 14-15 24.886753098784375 21.85228744957871 22.414616890097673 30.84634256153924 16-17 25.81064566813375 24.044177776961032 23.766688412521937 26.378488142383283 18-19 25.080168698832157 23.835141914676612 24.332693208861283 26.751996177629945 20-21 25.175268530684626 23.989966278610346 24.2403498938741 26.594415296830924 22-23 25.372818906030343 23.70604504148558 24.654746262622552 26.266389789861535 24-25 24.960260215192083 23.9141620648149 24.26791506252699 26.857662657466026 26-27 24.276184613122858 23.97939963062674 24.836216956254077 26.908198799996324 28-29 25.02871371734676 23.60818869276782 25.331471153051005 26.031626436834415 30-31 24.964854409967565 23.748771052897556 24.555511655472145 26.73086288166273 32-33 24.75489970872805 23.87832734556614 24.702985307765108 26.6637876379407 34-35 25.65168652890208 23.319213841390017 25.025957200481468 26.00314242922643 36-37 25.411869561621934 23.018753503073516 24.487517572795017 27.08185936250953 38-39 24.380472834526294 23.763013056701553 25.626877877114477 26.229636231657675 40-41 24.849999540580523 22.58092674097011 26.295333216947064 26.273740501502303 42-43 24.411713358999567 22.71369896998153 25.778945724182922 27.09564194683598 44-45 23.416610770630232 23.124879402387144 26.37205626969761 27.08645355728502 46-47 23.60818869276782 23.342644234744977 26.56639070870049 26.48277636378672 48-49 23.536519254270306 23.295783448035063 26.66608473532844 26.501612562366194 50-51 23.41477309272004 23.525952606286697 26.169452280098866 26.8898220208944 52-53 22.846930618470502 23.504359890841933 27.018459474607887 26.630250016079682 54-55 22.710483033638695 23.681236389697975 26.68308325599772 26.925197320665607 56-57 22.76653220989957 23.902676577876196 26.307737542840865 27.02305366938337 58-59 23.000376723971588 23.500684535021545 26.307737542840865 27.191201198166 60-61 22.524877564709232 23.17587496439499 26.561337094447456 27.737910376448323 62-63 22.33513732048184 23.061020095007947 26.732700559572926 27.87114202493729 64-65 23.11569101283618 23.48184833644207 25.923662859610598 27.478797791111155 66-67 22.991647753898174 23.50252221293174 25.659037240542848 27.846792792627234 68-69 22.693025093491865 23.887515735117105 25.32044508558985 28.099014085801183 70-71 22.837282809441987 23.855815791166282 25.554749019139418 27.752152380252316 72-73 22.692106254536768 23.4496889730137 25.761487784036092 28.09671698841344 74-75 22.529012340007167 23.613701726498395 25.93560776602685 27.92167816746759 76 23.043562154861117 23.51768305569083 25.72657190374243 27.712182885705623 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 1.0 14 4.5 15 5.0 16 7.0 17 11.0 18 21.5 19 32.0 20 37.5 21 43.0 22 65.5 23 109.0 24 199.5 25 269.0 26 310.0 27 383.5 28 488.0 29 560.0 30 681.5 31 903.0 32 1257.5 33 1512.0 34 1634.5 35 1998.5 36 2574.5 37 2909.0 38 3239.5 39 3975.0 40 4681.0 41 5163.5 42 5345.0 43 5563.5 44 5786.0 45 5802.0 46 5814.0 47 5644.5 48 5215.5 49 4645.0 50 4334.0 51 4132.0 52 3556.0 53 3094.5 54 3007.0 55 2810.0 56 2426.0 57 2088.0 58 1937.0 59 1873.5 60 1775.0 61 1736.0 62 1732.0 63 1736.0 64 1805.0 65 1866.0 66 1901.5 67 1941.0 68 1942.0 69 1956.5 70 1910.0 71 1850.0 72 1825.0 73 1782.5 74 1737.0 75 1709.0 76 1558.5 77 1272.0 78 1053.5 79 971.0 80 844.0 81 619.0 82 431.0 83 341.0 84 277.5 85 174.5 86 103.5 87 72.0 88 53.0 89 28.0 90 16.5 91 7.5 92 4.0 93 4.0 94 2.5 95 1.0 96 1.0 97 0.5 98 0.0 99 2.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 108833.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.13402184999035 #Duplication Level Percentage of deduplicated Percentage of total 1 73.41035894355845 42.67639410840462 2 13.094880589230112 15.225161485946359 3 5.707376440278809 9.953782400558655 4 2.705906526102831 6.292209164499737 5 1.4572697529595853 4.235847582994129 6 0.821887496246187 2.866777539900582 7 0.5911267761462959 2.405520384442219 8 0.4046215366135074 1.8817821800373047 9 0.3508827387820259 1.8358402322824878 >10 1.4556892000821888 12.62668492093391 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.188389550963403E-4 0.0 2 0.0 0.0 0.0 9.188389550963403E-4 0.0 3 0.0 0.0 0.0 9.188389550963403E-4 0.0 4 0.0 0.0 0.0 0.0027565168652890206 0.0 5 0.0 0.0 0.0 0.003675355820385361 0.0 6 0.0 0.0 0.0 0.003675355820385361 0.0 7 0.0 0.0 0.0 0.003675355820385361 0.0 8 0.0 0.0 0.0 0.003675355820385361 0.0 9 0.0 0.0 0.0 0.003675355820385361 0.0 10 0.0 0.0 0.0 0.003675355820385361 0.0 11 0.0 0.0 0.0 0.003675355820385361 0.0 12 0.0 0.0 0.0 0.003675355820385361 0.0 13 0.0 0.0 0.0 0.003675355820385361 0.0 14 0.0 0.0 0.0 0.003675355820385361 0.0 15 0.0 0.0 0.0 0.003675355820385361 0.0 16 0.0 0.0 0.0 0.003675355820385361 0.0 17 0.0 0.0 0.0 0.003675355820385361 0.0 18 0.0 0.0 0.0 0.003675355820385361 0.0 19 0.0 0.0 0.0 0.003675355820385361 0.0 20 0.0 0.0 0.0 0.005513033730578041 0.0 21 0.0 0.0 0.0 0.006431872685674382 0.0 22 0.0 0.0 0.0 0.011026067461156083 0.0 23 0.0 0.0 0.0 0.014701423281541445 0.0 24 0.0 0.0 0.0 0.018376779101926807 0.0 25 0.0 0.0 0.0 0.018376779101926807 0.0 26 0.0 0.0 0.0 0.020214457012119484 0.0 27 0.0 0.0 0.0 0.04410426984462433 0.0 28 0.0 0.0 0.0 0.07166943849751455 0.0 29 0.0 0.0 0.0 0.10107228506059743 0.0 30 0.0 0.0 0.0 0.12404325893800594 0.0 31 0.0 0.0 0.0 0.1415011990848364 0.0 32 0.0 0.0 0.0 0.17549824042340098 0.0 33 0.0 0.0 0.0 0.2581937463820716 0.0 34 0.0 0.0 0.0 0.36202254830795805 0.0 35 0.0 0.0 0.0 0.5209816875396249 0.0 36 0.0 0.0 0.0 0.7580421379544807 0.0 37 0.0 0.0 0.0 1.0814734501483925 0.0 38 0.0 0.0 0.0 1.4352264478604835 0.0 39 0.0 0.0 0.0 1.8128692584050794 0.0 40 0.0 0.0 0.0 2.2217525934229507 0.0 41 0.0 0.0 0.0 2.6462561906774598 0.0 42 0.0 0.0 0.0 3.058814881515717 0.0 43 0.0 0.0 0.0 3.543043010851488 0.0 44 0.0 0.0 0.0 4.1329376200233385 0.0 45 0.0 0.0 0.0 4.691591704721914 0.0 46 0.0 0.0 0.0 5.298944254040594 0.0 47 0.0 0.0 0.0 5.946725717383514 0.0 48 0.0 0.0 0.0 6.545808716106328 0.0 49 0.0 0.0 0.0 7.100787444984517 0.0 50 0.0 0.0 0.0 7.5592880835775915 0.0 51 0.0 0.0 0.0 8.083026287982506 0.0 52 0.0 0.0 0.0 8.611358687162902 0.0 53 0.0 0.0 0.0 9.100181011274154 0.0 54 0.0 0.0 0.0 9.600029402846562 0.0 55 0.0 0.0 0.0 10.197274723659184 0.0 56 0.0 0.0 0.0 10.78808817178613 0.0 57 0.0 0.0 0.0 11.385333492598752 0.0 58 0.0 0.0 0.0 11.938474543566748 0.0 59 0.0 0.0 0.0 12.474157654387916 0.0 60 0.0 0.0 0.0 13.019029154760045 0.0 61 0.0 0.0 0.0 13.449964624700229 0.0 62 0.0 0.0 0.0 13.921329008664651 0.0 63 0.0 0.0 0.0 14.450580246800143 0.0 64 0.0 0.0 0.0 15.000045941947755 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGTGTT 15 0.00221948 70.0 55 CACTGAC 20 0.0069352174 52.5 54 TGACATG 20 0.0069352174 52.5 57 TGCAGAG 40 0.0024098519 35.0 47 CCCGATC 40 0.0024098519 35.0 33 GTATGGA 45 0.004291503 31.111109 2 TGCAAGC 45 0.004291503 31.111109 53 ATCCTCT 50 0.0071821627 27.999998 24 CTAGAGG 50 0.0071821627 27.999998 3 GGGTGTA 50 0.0071821627 27.999998 1 ACTATAG 50 0.0071821627 27.999998 3 GAGCTAA 50 0.0071821627 27.999998 41 GATATAG 50 0.0071821627 27.999998 1 TATAGTG 50 0.0071821627 27.999998 5 AGGGGGG 50 0.0071821627 27.999998 10 GACTGGG 50 0.0071821627 27.999998 32 ACTTTCC 50 0.0071821627 27.999998 64 CTATAGT 65 7.912864E-4 26.923077 4 CTGTTCT 80 8.600083E-5 26.25 13 CTCTAGA 80 8.600083E-5 26.25 1 >>END_MODULE