SRR1781197_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781197_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	98619
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGT	5239	5.3123637432949025	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCG	540	0.5475618288565084	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCC	345	0.34983116843610257	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCATACCTCGTATGCCGT	287	0.29101897200336646	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCATAACTCGTATGCCGT	166	0.16832456220403777	No Hit
ATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGTCTT	129	0.13080643689349922	Illumina PCR Primer Index 6 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAAG	15	0.0022188602	70.00001	1
TTAGTCG	15	0.0022188602	70.00001	15
ATAACTC	20	7.892781E-5	70.0	35
CTCGTAT	805	0.0	56.956524	39
CTGCTTG	785	0.0	56.624203	54
CGTATGC	815	0.0	56.25767	41
TCGTATG	815	0.0	56.25767	40
CTTCTGC	785	0.0	56.17834	51
TATGCCG	810	0.0	56.17284	43
CTATCGG	25	2.3802955E-4	55.999996	38
AACTCGT	25	2.3802955E-4	55.999996	37
TAACTCG	25	2.3802955E-4	55.999996	36
GTATGCC	820	0.0	55.914635	42
TCTCGTA	760	0.0	55.723682	38
TCTGCTT	780	0.0	55.641026	53
TATCTCG	765	0.0	55.359478	36
GCCGTCT	800	0.0	55.124996	46
CGTCTTC	775	0.0	55.096775	48
CCGTCTT	775	0.0	55.096775	47
TCTTCTG	790	0.0	54.936707	50