##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781197_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 98619 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.28561433395188 34.0 34.0 34.0 32.0 34.0 2 33.29609912897109 34.0 34.0 34.0 33.0 34.0 3 33.35093643212768 34.0 34.0 34.0 33.0 34.0 4 33.41142173414859 34.0 34.0 34.0 34.0 34.0 5 33.39899005262678 34.0 34.0 34.0 34.0 34.0 6 36.82808586580679 38.0 37.0 38.0 34.0 38.0 7 36.71942526288038 38.0 37.0 38.0 34.0 38.0 8 36.50654539186161 38.0 37.0 38.0 34.0 38.0 9 36.478660298725394 38.0 37.0 38.0 34.0 38.0 10-11 36.38492075563532 38.0 37.0 38.0 34.0 38.0 12-13 36.29937435991036 38.0 37.0 38.0 34.0 38.0 14-15 36.30888064166135 38.0 37.0 38.0 34.0 38.0 16-17 36.21725529563268 38.0 37.0 38.0 33.5 38.0 18-19 36.20334316916619 38.0 37.0 38.0 33.5 38.0 20-21 36.15058964296941 38.0 36.5 38.0 33.0 38.0 22-23 36.23134487269188 38.0 37.0 38.0 34.0 38.0 24-25 36.205558766566284 38.0 37.0 38.0 34.0 38.0 26-27 35.982087630172686 38.0 36.5 38.0 31.5 38.0 28-29 35.94958882162666 38.0 36.0 38.0 31.5 38.0 30-31 36.014616858820304 38.0 37.0 38.0 32.0 38.0 32-33 35.88785629544003 38.0 36.0 38.0 31.0 38.0 34-35 35.87189081211531 38.0 36.0 38.0 31.0 38.0 36-37 35.817190399415935 38.0 36.0 38.0 31.0 38.0 38-39 35.455612001744086 38.0 36.0 38.0 31.0 38.0 40-41 35.75094048814123 38.0 36.0 38.0 31.0 38.0 42-43 35.88251756760867 38.0 36.0 38.0 31.5 38.0 44-45 35.859915432117546 38.0 36.0 38.0 31.0 38.0 46-47 35.85526115657227 38.0 36.0 38.0 31.5 38.0 48-49 35.813144525902715 38.0 36.0 38.0 31.0 38.0 50-51 35.676025917926566 38.0 36.0 38.0 31.0 38.0 52-53 35.68577049047344 38.0 36.0 38.0 31.0 38.0 54-55 35.690708686967014 38.0 36.0 38.0 31.0 38.0 56-57 35.641595432928746 38.0 36.0 38.0 31.0 38.0 58-59 35.57380423650615 38.0 36.0 38.0 31.0 38.0 60-61 35.549752076171934 38.0 36.0 38.0 31.0 38.0 62-63 35.56865309930136 38.0 36.0 38.0 31.0 38.0 64-65 35.53499832689441 38.0 36.0 38.0 31.0 38.0 66-67 35.399106663016255 38.0 36.0 38.0 30.5 38.0 68-69 35.142219045011615 38.0 36.0 38.0 27.5 38.0 70-71 34.67521978523408 38.0 35.5 38.0 25.5 38.0 72-73 34.300743264482506 38.0 35.0 38.0 24.0 38.0 74-75 34.295404536651155 38.0 35.0 38.0 24.0 38.0 76 33.39189202891938 37.0 34.0 38.0 22.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 4.0 22 20.0 23 54.0 24 96.0 25 230.0 26 388.0 27 705.0 28 1063.0 29 1662.0 30 2410.0 31 3521.0 32 4803.0 33 6469.0 34 8490.0 35 11430.0 36 15976.0 37 41298.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.17544286597917 16.463358987619017 9.134142508035977 32.22705563836583 2 22.196534136424013 17.394214096675086 34.93647268781878 25.472779079082127 3 19.874466380717713 19.365436680558513 31.808272239629282 28.951824699094498 4 14.724343179306217 20.256745657530494 32.38828217686247 32.63062898630081 5 15.040712235978868 31.22522029223578 37.54043338504751 16.19363408673785 6 31.19074417708555 38.82821768624707 15.15732262545757 14.823715511209807 7 29.051197030998082 25.537675295835488 19.156551982883624 26.254575690282806 8 24.992141473752522 37.21088228434683 16.653991624332026 21.142984617568622 9 23.79967349090946 13.632261531753517 17.768381346393696 44.79968363094333 10-11 26.195763493850073 24.819253896308012 26.09841916872002 22.886563441121893 12-13 25.16705705797057 19.563167340978918 26.131881280483476 29.13789432056703 14-15 23.548200650990175 20.210101501739018 20.71152617649743 35.53017167077338 16-17 27.75479370101096 26.135937294030565 20.86007767265943 25.24919133229905 18-19 27.762398726411746 22.801387156633105 21.767610703819752 27.6686034131354 20-21 24.000953163183564 22.597065474198683 21.570894046786115 31.831087315831635 22-23 24.372078402741863 25.557955363570915 21.846195966294527 28.223770267392695 24-25 27.768482746732374 25.632484612498608 21.510560845273226 25.0884717954958 26-27 27.204696863687527 26.244942658108478 22.07941674525193 24.47094373295207 28-29 24.300591163974488 25.780529106967215 22.51138218801651 27.407497541041785 30-31 24.206288849004757 25.853030349121365 22.02922357760675 27.911457224267128 32-33 26.95677303562194 22.90532250377716 21.730599580202597 28.4073048803983 34-35 24.363966375647696 24.95513035013537 22.50073515245541 28.18016812176153 36-37 24.030359261399934 25.371378740404992 25.554406351717212 25.04385564647786 38-39 23.74238229955688 22.939291617234 26.095377158559707 27.22294892464941 40-41 23.661262028615177 21.29001510865046 26.955252030541782 28.09347083219258 42-43 27.126618602906134 21.50042081140551 26.29412182236689 25.07883876332147 44-45 23.027509911883108 25.341972642188626 27.22142791956925 24.40908952635902 46-47 26.44419432360904 22.01401352680518 24.009065190277738 27.532726959308047 48-49 25.829708271225627 21.59370912298847 23.785984445188046 28.79059816059786 50-51 22.73547693649297 21.831492917186342 27.028767276082704 28.404262870237986 52-53 21.948103306665047 21.784848761394862 31.154240055161786 25.11280787677831 54-55 21.594723126375243 21.91819020675529 27.980409454567578 28.506677212301888 56-57 25.260345369553534 21.992719455682984 24.20730285239153 28.539632322371954 58-59 21.952666321905514 21.926302233849462 30.233017978280046 25.888013465964978 60-61 24.761962704955433 25.346028655735708 24.01210720043805 25.879901438870807 62-63 20.90976383861122 29.50901956012533 23.51220353075979 26.069013070503654 64-65 20.903679818290595 30.234538983360203 23.001145823827052 25.86063537452215 66-67 21.49940680801874 29.906508887739687 22.317707541143186 26.27637676309839 68-69 20.93663492836066 30.58234214502276 22.063192691063588 26.417830235552987 70-71 21.19824780214766 28.85904338920492 22.900759488536693 27.04194932011073 72-73 21.730092578509215 25.871789411776636 23.47874141899634 28.919376590717818 74-75 21.618045204270985 25.75010900536408 23.86507670935621 28.766769081008732 76 21.68344842271773 25.52347924842069 23.446800312313044 29.346272016548536 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 2.5 16 8.5 17 14.0 18 18.0 19 21.5 20 31.0 21 41.0 22 47.0 23 91.0 24 158.5 25 188.0 26 223.0 27 302.0 28 407.5 29 469.0 30 524.0 31 658.5 32 965.5 33 1193.0 34 1297.0 35 1601.5 36 2068.0 37 2334.0 38 2527.0 39 3064.5 40 4069.5 41 5403.5 42 6077.0 43 6496.0 44 6610.0 45 6010.0 46 5715.0 47 5439.5 48 4636.5 49 3985.0 50 3861.0 51 3546.5 52 2849.0 53 2396.0 54 2326.0 55 2193.0 56 1914.5 57 1660.5 58 1552.0 59 1476.5 60 1429.5 61 1441.0 62 1424.0 63 1500.5 64 1669.5 65 1748.0 66 1785.0 67 1836.0 68 1830.5 69 1780.0 70 1755.5 71 1776.0 72 1778.0 73 1662.5 74 1559.0 75 1573.0 76 1457.5 77 1234.0 78 976.5 79 827.0 80 752.5 81 566.5 82 389.5 83 324.0 84 261.5 85 158.0 86 95.0 87 73.0 88 51.0 89 18.5 90 8.0 91 5.5 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 98619.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.291667934170896 #Duplication Level Percentage of deduplicated Percentage of total 1 58.96978021978022 26.118699236455452 2 20.215201465201467 17.907299810381367 3 8.869047619047619 11.784747361056185 4 4.242216117216118 7.5157931027489635 5 2.1314102564102564 4.720185765420457 6 1.353021978021978 3.595656009491072 7 0.9134615384615385 2.8321114592522743 8 0.7005494505494506 2.4822802908161714 9 0.4601648351648352 1.8343321266693031 >10 2.1222527472527473 14.14636124884657 >50 0.009157509157509158 0.26262687717376976 >100 0.009157509157509158 0.939981139537006 >500 0.0022893772893772895 0.5475618288565084 >1k 0.0 0.0 >5k 0.0022893772893772895 5.3123637432949025 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGT 5239 5.3123637432949025 No Hit TCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCG 540 0.5475618288565084 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCC 345 0.34983116843610257 No Hit CTTATACACATCTCCGAGCCCACGAGACAACGCCATACCTCGTATGCCGT 287 0.29101897200336646 No Hit CTTATACACATCTCCGAGCCCACGAGACAACGCCATAACTCGTATGCCGT 166 0.16832456220403777 No Hit ATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGTCTT 129 0.13080643689349922 Illumina PCR Primer Index 6 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001014003386771312 0.0 2 0.0 0.0 0.0 0.001014003386771312 0.0 3 0.0 0.0 0.0 0.001014003386771312 0.0 4 0.0 0.0 0.0 0.0030420101603139352 0.0 5 0.0 0.0 0.0 0.004056013547085248 0.0 6 0.0 0.0 0.0 0.004056013547085248 0.0 7 0.0 0.0 0.0 0.004056013547085248 0.0 8 0.0 0.0 0.0 0.004056013547085248 0.0 9 0.0 0.0 0.0 0.004056013547085248 0.0 10 0.0 0.0 0.0 0.004056013547085248 0.0 11 0.0 0.0 0.0 0.004056013547085248 0.0 12 0.0 0.0 0.0 0.004056013547085248 0.0 13 0.0 0.0 0.0 0.004056013547085248 0.0 14 0.0 0.0 0.0 0.005070016933856559 0.0 15 0.0 0.0 0.0 0.005070016933856559 0.0 16 0.0 0.0 0.0 0.0060840203206278705 0.0 17 0.0 0.0 0.0 0.0060840203206278705 0.0 18 0.0 0.0 0.0 0.0060840203206278705 0.0 19 0.0 0.0 0.0 0.0060840203206278705 0.0 20 0.0 0.0 0.0 0.0060840203206278705 0.0 21 0.0 0.0 0.0 0.007098023707399183 0.0 22 0.0 0.0 0.0 0.010140033867713118 0.0 23 0.0 0.0 0.0 0.01115403725448443 0.0 24 0.0 0.0 0.0 0.01115403725448443 0.0 25 0.0 0.0 0.0 0.01115403725448443 0.0 26 0.0 0.0 0.0 0.014196047414798366 0.0 27 0.0 0.0 0.0 0.03954613208408116 0.0 28 0.0 0.0 0.0 0.06895223030044921 0.0 29 0.0 0.0 0.0 0.10140033867713118 0.0 30 0.0 0.0 0.0 0.12472241657287135 0.0 31 0.0 0.0 0.0 0.14094647076121233 0.0 32 0.0 0.0 0.0 0.1804926028452935 0.0 33 0.0 0.0 0.0 0.2747949178150255 0.0 34 0.0 0.0 0.0 0.39748932761435424 0.0 35 0.0 0.0 0.0 0.5647998864316207 0.0 36 0.0 0.0 0.0 0.8203287398979913 0.0 37 0.0 0.0 0.0 1.1955099930033766 0.0 38 0.0 0.0 0.0 1.5848872935235603 0.0 39 0.0 0.0 0.0 1.9884606414585424 0.0 40 0.0 0.0 0.0 2.4143420639024935 0.0 41 0.0 0.0 0.0 2.8574615439215565 0.0 42 0.0 0.0 0.0 3.2934830002332207 0.0 43 0.0 0.0 0.0 3.8156947444204463 0.0 44 0.0 0.0 0.0 4.438292823898032 0.0 45 0.0 0.0 0.0 5.050750869507904 0.0 46 0.0 0.0 0.0 5.67334894898549 0.0 47 0.0 0.0 0.0 6.356787231669354 0.0 48 0.0 0.0 0.0 6.974315294213083 0.0 49 0.0 0.0 0.0 7.5654792687007575 0.0 50 0.0 0.0 0.0 8.066396941765786 0.0 51 0.0 0.0 0.0 8.624098804490007 0.0 52 0.0 0.0 0.0 9.180786663827456 0.0 53 0.0 0.0 0.0 9.68576035043957 0.0 54 0.0 0.0 0.0 10.21912613188128 0.0 55 0.0 0.0 0.0 10.840710207972094 0.0 56 0.0 0.0 0.0 11.47040631115708 0.0 57 0.0 0.0 0.0 12.132550522718747 0.0 58 0.0 0.0 0.0 12.714588466725479 0.0 59 0.0 0.0 0.0 13.284458370090956 0.0 60 0.0 0.0 0.0 13.841146229428407 0.0 61 0.0 0.0 0.0 14.297447753475497 0.0 62 0.0 0.0 0.0 14.788225392672812 0.0 63 0.0 0.0 0.0 15.338829231689633 0.0 64 0.0 0.0 0.0 15.90768513166834 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACAAG 15 0.0022188602 70.00001 1 TTAGTCG 15 0.0022188602 70.00001 15 ATAACTC 20 7.892781E-5 70.0 35 CTCGTAT 805 0.0 56.956524 39 CTGCTTG 785 0.0 56.624203 54 CGTATGC 815 0.0 56.25767 41 TCGTATG 815 0.0 56.25767 40 CTTCTGC 785 0.0 56.17834 51 TATGCCG 810 0.0 56.17284 43 CTATCGG 25 2.3802955E-4 55.999996 38 AACTCGT 25 2.3802955E-4 55.999996 37 TAACTCG 25 2.3802955E-4 55.999996 36 GTATGCC 820 0.0 55.914635 42 TCTCGTA 760 0.0 55.723682 38 TCTGCTT 780 0.0 55.641026 53 TATCTCG 765 0.0 55.359478 36 GCCGTCT 800 0.0 55.124996 46 CGTCTTC 775 0.0 55.096775 48 CCGTCTT 775 0.0 55.096775 47 TCTTCTG 790 0.0 54.936707 50 >>END_MODULE