##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781196_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 258028 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.347578557365868 34.0 32.0 34.0 23.0 34.0 2 31.301688188878725 34.0 32.0 34.0 23.0 34.0 3 31.19500984389291 34.0 32.0 34.0 23.0 34.0 4 31.36314663524889 34.0 33.0 34.0 23.0 34.0 5 31.40752553986389 34.0 33.0 34.0 23.0 34.0 6 34.133059202877206 37.0 34.0 38.0 24.0 38.0 7 34.099427193947946 37.0 34.0 38.0 24.0 38.0 8 33.851093679755685 37.0 34.0 38.0 23.0 38.0 9 34.22386330165718 37.0 34.0 38.0 24.0 38.0 10-11 34.04835521726324 37.0 34.0 38.0 23.5 38.0 12-13 34.013002464848775 37.0 34.0 38.0 23.0 38.0 14-15 33.89237214565861 37.0 34.0 38.0 23.0 38.0 16-17 33.8573488148573 37.0 34.0 38.0 22.5 38.0 18-19 33.92469421923202 37.0 34.0 38.0 23.0 38.0 20-21 33.843803773233915 37.0 34.0 38.0 23.0 38.0 22-23 33.93425713488459 37.0 34.0 38.0 23.0 38.0 24-25 33.914536406901576 37.0 34.0 38.0 23.0 38.0 26-27 33.837810237648625 37.0 34.0 38.0 23.0 38.0 28-29 33.89854395646984 37.0 34.0 38.0 23.0 38.0 30-31 33.99010378718589 37.0 34.0 38.0 23.0 38.0 32-33 33.92195808206861 37.0 34.0 38.0 23.0 38.0 34-35 33.95310974002821 37.0 34.0 38.0 23.0 38.0 36-37 33.79744252561737 37.0 34.0 38.0 23.0 38.0 38-39 33.81738997318121 37.0 34.0 38.0 23.0 38.0 40-41 33.800122467329125 37.0 34.0 38.0 23.0 38.0 42-43 33.88525857658859 37.0 34.0 38.0 23.0 38.0 44-45 33.9062291689274 37.0 34.0 38.0 23.0 38.0 46-47 33.887719549816296 37.0 34.0 38.0 23.0 38.0 48-49 33.86106352798922 37.0 34.0 38.0 23.0 38.0 50-51 33.724973646270946 37.0 34.0 38.0 23.0 38.0 52-53 33.81816314508503 37.0 34.0 38.0 23.0 38.0 54-55 33.77497984714837 37.0 34.0 38.0 23.0 38.0 56-57 33.75617181081123 37.0 34.0 38.0 23.0 38.0 58-59 33.738125319732745 37.0 34.0 38.0 23.0 38.0 60-61 33.72092951152588 37.0 34.0 38.0 23.0 38.0 62-63 33.70057900692948 37.0 34.0 38.0 22.5 38.0 64-65 33.70050730928426 37.0 34.0 38.0 23.0 38.0 66-67 33.580045576449066 37.0 34.0 38.0 22.0 38.0 68-69 33.36989784054444 37.0 34.0 38.0 21.5 38.0 70-71 33.51280287410668 37.0 34.0 38.0 22.0 38.0 72-73 33.45779721580604 37.0 34.0 38.0 22.0 38.0 74-75 33.43426876152976 37.0 33.0 38.0 22.0 38.0 76 31.976002604368517 36.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 42.0 14 131.0 15 364.0 16 869.0 17 1655.0 18 2196.0 19 2385.0 20 2271.0 21 2250.0 22 2248.0 23 2683.0 24 3064.0 25 3735.0 26 4611.0 27 5305.0 28 6479.0 29 7498.0 30 8961.0 31 10600.0 32 12932.0 33 15728.0 34 19638.0 35 25489.0 36 37787.0 37 79104.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.862852093571234 18.823538530702095 9.752817523679601 25.560791852047064 2 23.684251321562 19.95326088641543 31.660905018060053 24.701582773962517 3 19.941634241245136 22.185576759111413 28.61084843505356 29.26194056458989 4 14.324026849799246 16.786937851706014 36.8219728091525 32.06706248934224 5 14.156990714186058 33.76881578743392 36.03717426015781 16.037019238222207 6 29.972716139333716 36.57742570573736 18.36002294324647 15.089835211682454 7 29.018556125691784 28.567054738245464 22.6514176756011 19.762971460461657 8 25.56970561334429 33.46962345171842 20.013719441300946 20.946951493636348 9 24.62562202551661 15.779682825119753 21.696094997442138 37.8986001519215 10-11 26.05434293952594 23.96019036693692 27.384043592168293 22.601423101368844 12-13 25.6059419907917 22.43826251414575 26.09774908149503 25.85804641356752 14-15 24.057854186367372 23.721456586106935 23.49512456012526 28.725564667400437 16-17 24.251050273613718 26.032252313702386 25.089137612972234 24.62755979971166 18-19 23.379826995519867 26.063838033081684 26.18708047188677 24.36925449951168 20-21 23.5406622537089 26.010936797556855 26.211883981583394 24.236516967150852 22-23 23.977436557272856 25.477273784240467 26.44112266885764 24.104166989629032 24-25 23.706148169966053 25.820841149022588 26.20297022028617 24.27004046072519 26-27 23.021726324274887 26.11712682344552 26.570953539925902 24.290193312353697 28-29 23.674756228006263 25.71135690700234 27.153836017796518 23.46005084719488 30-31 23.844117692653512 25.456733377772956 26.754654533616506 23.94449439595703 32-33 23.310842234176135 26.276024307439506 26.26904832033733 24.144085138047032 34-35 24.31499682205032 25.402088145472586 26.46999550436387 23.812919528113227 36-37 24.288449315578152 25.094757158137877 25.888663245849287 24.728130280434684 38-39 23.297471592230302 25.695273381183437 27.13794626939712 23.869308757189142 40-41 23.56779109243958 24.818430557923946 27.395864014758086 24.217914334878383 42-43 23.277318740601796 25.07014742586076 26.92459733052227 24.727936503015176 44-45 22.61130574976359 25.088750058133225 27.353814314725533 24.946129877377647 46-47 23.09439285658921 24.57620878354287 27.57142635682949 24.757972003038432 48-49 22.463453578681385 24.614964267443842 28.233370021858097 24.68821213201668 50-51 22.36172043344133 24.565163470631095 27.980684266823758 25.092431829103816 52-53 21.8819275427473 24.53067108995923 28.567442293084472 25.019959074209 54-55 21.24711271644938 25.059489667787993 28.461252267195807 25.23214534856682 56-57 21.13088721163442 25.129685789305405 28.421001637422368 25.318425361637807 58-59 21.427713271427905 24.881020664424017 28.079898305610246 25.611367758537835 60-61 20.877425855771186 24.796581759696156 28.037321603317476 26.288670781215178 62-63 20.608268498512754 24.32260127312011 28.676013215645618 26.39311701272151 64-65 21.56452012959834 24.536290635124868 27.791169950548 26.10801928472879 66-67 21.43996279466336 24.562691961128174 27.29941575994807 26.697929484260396 68-69 21.23397699857573 24.673920415459595 26.879111722587705 27.21299086337697 70-71 21.78958016021579 24.53483550171106 26.747394652497608 26.928189685575543 72-73 21.777869068473187 23.92860464755763 26.770156727176897 27.52336955679229 74-75 21.418799510130686 24.3182910381819 26.839141488520625 27.42376796316679 76 21.870882229835523 24.289999534934193 26.581611297998663 27.257506937231618 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 2.5 12 5.0 13 4.0 14 4.5 15 11.0 16 19.5 17 23.0 18 37.0 19 51.5 20 70.0 21 88.0 22 128.5 23 262.0 24 440.5 25 526.0 26 670.5 27 955.0 28 1274.0 29 1453.0 30 1714.0 31 2266.5 32 3242.5 33 3927.0 34 4412.0 35 5525.5 36 6899.0 37 7644.0 38 8545.5 39 10799.5 40 13186.5 41 14887.0 42 15553.0 43 15891.5 44 16499.5 45 16906.0 46 17043.0 47 16583.5 48 15217.0 49 13581.0 50 12852.0 51 11968.0 52 9996.5 53 8095.5 54 7282.0 55 6632.0 56 5536.5 57 4494.0 58 3897.0 59 3577.0 60 3061.0 61 2801.0 62 2737.0 63 2670.0 64 2521.0 65 2445.5 66 2409.0 67 2366.0 68 2458.0 69 2533.0 70 2422.5 71 2329.0 72 2321.0 73 2245.5 74 2074.0 75 1970.0 76 1764.5 77 1450.5 78 1259.0 79 1176.0 80 1024.0 81 763.0 82 555.0 83 456.0 84 357.5 85 213.0 86 123.5 87 80.0 88 69.0 89 41.5 90 22.0 91 14.0 92 9.0 93 6.0 94 4.0 95 3.5 96 2.0 97 2.5 98 2.0 99 3.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 1.9377741950485993E-4 58-59 0.0 60-61 1.9377741950485993E-4 62-63 1.9377741950485993E-4 64-65 0.0 66-67 1.9377741950485993E-4 68-69 1.9377741950485993E-4 70-71 3.8755483900971985E-4 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 258028.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.23864924373361 #Duplication Level Percentage of deduplicated Percentage of total 1 67.45063812498479 28.490238450272386 2 14.616970714770128 12.348021980542033 3 6.422513788115292 8.13834921477734 4 2.92613065387872 4.943832253220806 5 1.6996850099371752 3.589619947978412 6 1.0175509506698344 2.5787986615782494 7 0.8191113723526546 2.421871056384994 8 0.6019233402547024 2.033954307250792 9 0.5235812089934636 1.9903826733556407 >10 3.794966260918319 30.008154948757287 >50 0.12395368664544397 3.3164614532381176 >100 0.0029748884794906553 0.14031505264394661 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0019377741950485994 0.0 2 0.0 0.0 0.0 0.0019377741950485994 0.0 3 0.0 0.0 0.0 0.0019377741950485994 0.0 4 0.0 0.0 0.0 0.003100438712077759 0.0 5 0.0 0.0 0.0 0.003100438712077759 0.0 6 0.0 0.0 0.0 0.003100438712077759 0.0 7 0.0 0.0 0.0 0.003100438712077759 0.0 8 0.0 0.0 0.0 0.003100438712077759 0.0 9 0.0 0.0 0.0 0.003875548390097199 0.0 10 0.0 0.0 0.0 0.004263103229106919 0.0 11 0.0 0.0 0.0 0.004263103229106919 0.0 12 0.0 0.0 0.0 0.004263103229106919 0.0 13 0.0 0.0 0.0 0.004263103229106919 0.0 14 0.0 0.0 0.0 0.004263103229106919 0.0 15 0.0 0.0 0.0 0.004263103229106919 0.0 16 0.0 0.0 0.0 0.004263103229106919 0.0 17 0.0 0.0 0.0 0.004263103229106919 0.0 18 0.0 0.0 0.0 0.005038212907126359 0.0 19 0.0 0.0 0.0 0.005813322585145798 0.0 20 0.0 0.0 0.0 0.005813322585145798 0.0 21 0.0 0.0 0.0 0.006588432263165238 0.0 22 0.0 0.0 0.0 0.008138651619204117 0.0 23 0.0 0.0 0.0 0.009301316136233277 0.0 24 0.0 0.0 0.0 0.009688870975242996 0.0 25 0.0 0.0 0.0 0.009688870975242996 0.0 26 0.0 0.0 0.0 0.010076425814252717 0.0 27 0.0 0.0 0.0 0.021703070984544312 0.0 28 0.0 0.0 0.0 0.03487993551087479 0.0 29 0.0 0.0 0.0 0.05503278713938022 0.0 30 0.0 0.0 0.0 0.0720852000558079 0.0 31 0.0 0.0 0.0 0.0895251678112453 0.0 32 0.0 0.0 0.0 0.11394112266885764 0.0 33 0.0 0.0 0.0 0.1542468259258685 0.0 34 0.0 0.0 0.0 0.22284403243058892 0.0 35 0.0 0.0 0.0 0.3189576325049995 0.0 36 0.0 0.0 0.0 0.5011084068395678 0.0 37 0.0 0.0 0.0 0.7836358844776535 0.0 38 0.0 0.0 0.0 1.1146077169919544 0.0 39 0.0 0.0 0.0 1.4951865688994992 0.0 40 0.0 0.0 0.0 1.9238222208442495 0.0 41 0.0 0.0 0.0 2.3528454276280093 0.0 42 0.0 0.0 0.0 2.857829382857674 0.0 43 0.0 0.0 0.0 3.4562140542886817 0.0 44 0.0 0.0 0.0 4.155362983862217 0.0 45 0.0 0.0 0.0 4.990543661928163 0.0 46 0.0 3.8755483900971985E-4 0.0 5.896646875532888 0.0 47 0.0 3.8755483900971985E-4 0.0 6.832979366580371 0.0 48 0.0 3.8755483900971985E-4 0.0 7.721642612429659 0.0 49 0.0 3.8755483900971985E-4 0.0 8.586665013099353 0.0 50 0.0 3.8755483900971985E-4 0.0 9.330382749159005 0.0 51 0.0 3.8755483900971985E-4 0.0 10.123707504611902 0.0 52 0.0 3.8755483900971985E-4 0.0 10.810842234176135 0.0 53 0.0 3.8755483900971985E-4 0.0 11.561535957337963 0.0 54 0.0 3.8755483900971985E-4 0.0 12.382764661199559 0.0 55 0.0 3.8755483900971985E-4 0.0 13.265614584463702 0.0 56 0.0 3.8755483900971985E-4 0.0 14.162416481932194 0.0 57 0.0 3.8755483900971985E-4 0.0 15.008061140651401 0.0 58 0.0 3.8755483900971985E-4 0.0 15.878896863906244 0.0 59 0.0 3.8755483900971985E-4 0.0 16.646642999984497 0.0 60 0.0 3.8755483900971985E-4 0.0 17.423302897359978 0.0 61 0.0 3.8755483900971985E-4 0.0 18.135628691459843 0.0 62 0.0 3.8755483900971985E-4 0.0 18.861518904925045 0.0 63 0.0 3.8755483900971985E-4 0.0 19.556404731269474 0.0 64 0.0 3.8755483900971985E-4 0.0 20.262917202784195 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGCTTG 20 0.0069459593 52.499996 15 GCGTTTC 30 5.870881E-4 46.666668 7 CGTTTCC 35 0.0012539595 40.000004 8 GTACAAG 55 6.679038E-6 38.181816 1 GGTCGGT 60 1.2128994E-5 35.000004 11 CTGTACG 40 0.0024159695 34.999996 41 GACTTTA 40 0.0024159695 34.999996 7 CGGTAAG 40 0.0024159695 34.999996 28 GTCGGGA 40 0.0024159695 34.999996 9 TGTATAG 75 1.4859033E-6 32.666668 3 GCGTATC 75 1.4859033E-6 32.666668 47 CGTATCA 65 2.0977399E-5 32.307693 48 AAAGCGA 55 2.9870702E-4 31.81818 25 GCATAAG 45 0.0043023312 31.111109 60 GTTTATC 45 0.0043023312 31.111109 39 AAGCGGA 45 0.0043023312 31.111109 45 ACATAAG 45 0.0043023312 31.111109 26 TACATGC 60 4.9737113E-4 29.166668 2 TGTCTAA 60 4.9737113E-4 29.166668 13 CCTATGC 60 4.9737113E-4 29.166668 44 >>END_MODULE