##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781196_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 232272 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.30927102707171 34.0 34.0 34.0 33.0 34.0 2 33.31387338981883 34.0 34.0 34.0 33.0 34.0 3 33.363268065027206 34.0 34.0 34.0 33.0 34.0 4 33.43078373630915 34.0 34.0 34.0 34.0 34.0 5 33.43419353172143 34.0 34.0 34.0 34.0 34.0 6 36.86852483295447 38.0 37.0 38.0 34.0 38.0 7 36.773196941516844 38.0 37.0 38.0 34.0 38.0 8 36.555572776744505 38.0 37.0 38.0 34.0 38.0 9 36.51861179995867 38.0 37.0 38.0 34.0 38.0 10-11 36.45188830336846 38.0 37.0 38.0 34.0 38.0 12-13 36.38212096163119 38.0 37.0 38.0 34.0 38.0 14-15 36.389233312667905 38.0 37.0 38.0 34.0 38.0 16-17 36.316441499621135 38.0 37.0 38.0 34.0 38.0 18-19 36.3095551766894 38.0 37.0 38.0 34.0 38.0 20-21 36.24484010126059 38.0 37.0 38.0 34.0 38.0 22-23 36.31784072122339 38.0 37.0 38.0 34.0 38.0 24-25 36.31098023007509 38.0 37.0 38.0 34.0 38.0 26-27 36.09997976510299 38.0 37.0 38.0 33.0 38.0 28-29 36.082560532479164 38.0 37.0 38.0 32.5 38.0 30-31 36.085884221946685 38.0 37.0 38.0 33.0 38.0 32-33 36.07053368464559 38.0 37.0 38.0 32.5 38.0 34-35 36.04936023283047 38.0 37.0 38.0 32.5 38.0 36-37 36.0012549941448 38.0 37.0 38.0 32.0 38.0 38-39 35.79893185575532 38.0 36.0 38.0 31.0 38.0 40-41 35.91613065716057 38.0 36.5 38.0 32.0 38.0 42-43 35.99172306606048 38.0 37.0 38.0 32.0 38.0 44-45 35.97071106289178 38.0 37.0 38.0 32.0 38.0 46-47 35.97251928773163 38.0 37.0 38.0 32.0 38.0 48-49 35.943346593648826 38.0 37.0 38.0 32.0 38.0 50-51 35.83919930081973 38.0 36.0 38.0 31.0 38.0 52-53 35.87494833643315 38.0 37.0 38.0 32.0 38.0 54-55 35.901329045257285 38.0 37.0 38.0 32.0 38.0 56-57 35.84781420059241 38.0 36.5 38.0 31.5 38.0 58-59 35.818508042295235 38.0 36.0 38.0 31.0 38.0 60-61 35.82310825239375 38.0 36.0 38.0 31.5 38.0 62-63 35.79427782944134 38.0 36.0 38.0 31.0 38.0 64-65 35.76155757043466 38.0 36.0 38.0 31.0 38.0 66-67 35.7183625232486 38.0 36.0 38.0 31.0 38.0 68-69 35.595777794998966 38.0 36.0 38.0 31.0 38.0 70-71 35.38625619962802 38.0 36.0 38.0 29.5 38.0 72-73 35.20920946132121 38.0 36.0 38.0 27.0 38.0 74-75 35.215639422745745 38.0 36.0 38.0 27.0 38.0 76 34.335882069298066 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 11.0 22 29.0 23 72.0 24 159.0 25 353.0 26 636.0 27 1186.0 28 2036.0 29 3239.0 30 4770.0 31 7172.0 32 10048.0 33 13731.0 34 18883.0 35 26481.0 36 38907.0 37 104556.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.6867121306055 18.223031618102915 10.019718261348762 28.070537989942824 2 22.81032582489495 19.721705586553696 32.80205965419852 24.665908934352828 3 19.582644485775297 21.99188882000413 30.258490046152787 28.16697664806778 4 14.124388647792244 18.825773231383895 35.81103189364194 31.238806227181925 5 13.637459530205964 33.73889233312668 37.10735689191982 15.516291244747539 6 29.718175242818763 39.39433078459737 16.81562995109182 14.071864021492045 7 28.38482468829648 28.297427154370737 21.564372804298408 21.753375353034375 8 24.923796238892333 36.145984018736655 18.639784390714333 20.290435351656676 9 24.038196597093066 15.614452021767583 20.221550595853138 40.125800785286216 10-11 25.176517186746572 25.272740580009646 27.30139663842392 22.249345594819868 12-13 24.7451264035269 22.302731280567613 26.45454467176414 26.49759764414135 14-15 23.18402562512916 22.884592202245642 22.639836054281187 31.29154611834401 16-17 24.97029344905972 26.92812736791348 23.9712492250465 24.130329957980297 18-19 24.682914858441826 25.597359991733832 24.835107115795275 24.884618034029067 20-21 22.875120548322656 25.704777157814974 24.682269063856168 26.737833230006196 22-23 23.474633188675345 26.596188950885168 24.772680305848315 25.156497554591166 24-25 24.639000826617067 26.751179651443135 24.88354170971964 23.726277812220157 26-27 24.05864675897224 27.092374457532546 25.06436419370393 23.78461458979128 28-29 24.478413239650067 25.384893573052285 25.77409244334229 24.362600743955362 30-31 23.561384928015432 27.998639526072882 25.138200041330855 23.301775504580835 32-33 22.483769029413793 27.506974581525107 26.36219604601502 23.647060343046082 34-35 25.169843976028105 24.977181924640078 25.2903922986843 24.562581800647518 36-37 23.60723634359716 25.994738926775508 24.693247571812357 25.704777157814974 38-39 22.629933870634428 25.89098126334642 26.80779431011917 24.67129055589998 40-41 22.744670042019703 24.241191361851623 27.835038231039473 25.17910036508921 42-43 24.17682716814769 24.59250361644968 27.137364813666736 24.093304401735896 44-45 22.072828408073295 26.30235241441069 27.59178893710822 24.0330302404078 46-47 23.91269718261349 24.12150409864297 26.50534717916925 25.46045153957429 48-49 23.199094165461183 23.923675690569677 26.999595302059653 25.877634841909487 50-51 21.652631397671694 23.988255149135497 28.3891299855342 25.969983467658608 52-53 21.003392574223327 23.941112144382448 30.29723772129228 24.75825756010195 54-55 20.34941792381346 24.37530137080664 29.133515877936212 26.141764827443687 56-57 21.496564372804297 24.46872632086519 27.51902941379073 26.51567989253978 58-59 20.382999242267687 24.45688675346146 29.70095405386788 25.459159950402977 60-61 21.727113039884273 25.346361162774677 26.996151064269476 25.93037473307157 62-63 19.3122718192464 27.23660191499621 26.988616794103464 26.462509471653924 64-65 19.831490666115588 27.69447027622787 26.052645174622857 26.421393883033684 66-67 20.111550251429357 27.598462147826687 25.366380794930084 26.923606805813872 68-69 20.064191981814425 28.180538334366606 24.832739202314528 26.92253048150444 70-71 20.685446373217605 27.162550802507408 24.754598057449886 27.3974047668251 72-73 20.485250051663566 26.07288007164015 24.751799614245368 28.690070262450917 74-75 20.700299648687746 26.239925604463732 24.867612109940072 28.192162636908453 76 21.135134669697596 26.148653303024037 24.716280912034165 27.9999311152442 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.5 12 1.0 13 1.0 14 6.0 15 13.0 16 22.0 17 29.0 18 42.0 19 60.5 20 86.5 21 107.0 22 143.0 23 237.5 24 399.0 25 502.0 26 613.0 27 786.5 28 1039.5 29 1230.0 30 1448.5 31 1856.5 32 2779.5 33 3513.0 34 3833.5 35 4732.5 36 5912.5 37 6514.0 38 7377.5 39 9156.5 40 11615.5 41 14212.5 42 15266.0 43 15727.0 44 16147.5 45 15837.5 46 15568.0 47 15105.0 48 13519.5 49 11810.5 50 11224.0 51 10426.0 52 8738.0 53 7065.5 54 6283.0 55 5784.0 56 4740.5 57 3812.0 58 3428.0 59 3070.5 60 2601.5 61 2382.0 62 2274.0 63 2204.5 64 2154.5 65 2220.5 66 2262.0 67 2257.0 68 2276.5 69 2277.0 70 2264.5 71 2271.0 72 2170.5 73 2024.0 74 1888.0 75 1798.0 76 1706.5 77 1507.0 78 1238.5 79 1078.0 80 971.5 81 726.5 82 492.0 83 396.0 84 312.0 85 188.5 86 109.5 87 70.0 88 62.5 89 42.0 90 19.5 91 7.0 92 4.0 93 3.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 232272.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.48555142247021 #Duplication Level Percentage of deduplicated Percentage of total 1 57.773922327505666 20.50139491630502 2 19.339262099171346 13.725287593855478 3 8.328985841330697 8.866759661087 4 3.8520801232665636 5.467727491906041 5 2.1535251082828823 3.820951298477647 6 1.30303434720891 2.774333539987601 7 0.9851619086905353 2.4471309499207825 8 0.789828081967412 2.242198801405249 9 0.6503039200223238 2.0768753874767514 >10 4.639481698069713 30.971877798443202 >50 0.16864224791623697 3.820090239030103 >100 0.013345789403443215 0.7951883998071226 >500 0.0012132535821312012 0.2324860508369498 >1k 0.0 0.0 >5k 0.0012132535821312012 2.2576978714610454 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGT 5244 2.2576978714610454 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG 540 0.2324860508369498 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCC 367 0.15800440862437143 No Hit CTTATACACATCTCCGAGCCCACGAGACGAAATGCCACCTCGTATGCCGT 319 0.13733898188330923 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002152648618860646 0.0 2 0.0 0.0 0.0 0.002152648618860646 0.0 3 0.0 0.0 0.0 0.002152648618860646 0.0 4 0.0 0.0 0.0 0.004305297237721292 0.0 5 0.0 0.0 0.0 0.004305297237721292 0.0 6 0.0 0.0 0.0 0.004305297237721292 0.0 7 0.0 0.0 0.0 0.004305297237721292 0.0 8 0.0 0.0 0.0 0.004305297237721292 0.0 9 0.0 0.0 0.0 0.0051663566852655505 0.0 10 0.0 0.0 0.0 0.006027416132809809 0.0 11 0.0 0.0 0.0 0.006027416132809809 0.0 12 0.0 0.0 0.0 0.006027416132809809 0.0 13 0.0 0.0 0.0 0.006027416132809809 0.0 14 0.0 0.0 0.0 0.006027416132809809 0.0 15 0.0 0.0 0.0 0.006027416132809809 0.0 16 0.0 0.0 0.0 0.006457945856581939 0.0 17 0.0 0.0 0.0 0.006457945856581939 0.0 18 0.0 0.0 0.0 0.007319005304126197 0.0 19 0.0 0.0 0.0 0.008180064751670456 0.0 20 0.0 0.0 0.0 0.008180064751670456 0.0 21 0.0 0.0 0.0 0.008610594475442584 0.0 22 0.0 0.0 0.0 0.009471653922986843 0.0 23 0.0 0.0 0.0 0.011624302541847488 0.0 24 0.0 0.0 0.0 0.012054832265619618 0.0 25 0.0 0.0 0.0 0.012485361989391748 0.0 26 0.0 0.0 0.0 0.013346421436936005 0.0 27 0.0 0.0 0.0 0.024540194255011367 0.0 28 0.0 0.0 0.0 0.038317145415719504 0.0 29 0.0 0.0 0.0 0.059843631604325966 0.0 30 0.0 0.0 0.0 0.07921746917407178 0.0 31 0.0 0.0 0.0 0.1003134256389061 0.0 32 0.0 0.0 0.0 0.12571467934146174 0.0 33 0.0 0.0 0.0 0.16962871116621892 0.0 34 0.0 0.0 0.0 0.24497141282634152 0.0 35 0.0 0.0 0.0 0.3526038437693738 0.0 36 0.0 0.0 0.0 0.5571054625611352 0.0 37 0.0 0.0 0.0 0.8718226906385617 0.0 38 0.0 0.0 0.0 1.2218433560653028 0.0 39 0.0 0.0 0.0 1.629124474753737 0.0 40 0.0 8.610594475442584E-4 0.0 2.0811806847144725 0.0 41 0.0 8.610594475442584E-4 0.0 2.5409864297031066 0.0 42 0.0 8.610594475442584E-4 0.0 3.0800096438658127 0.0 43 0.0 8.610594475442584E-4 0.0 3.7163325756010197 0.0 44 0.0 8.610594475442584E-4 0.0 4.453829992422677 0.0 45 0.0 8.610594475442584E-4 0.0 5.322208445271062 0.0 46 0.0 8.610594475442584E-4 0.0 6.271526486188606 0.0 47 0.0 8.610594475442584E-4 0.0 7.248398429427568 0.0 48 0.0 8.610594475442584E-4 0.0 8.196424881173796 0.0 49 0.0 8.610594475442584E-4 0.0 9.105703657780532 0.0 50 0.0 8.610594475442584E-4 0.0 9.895725700902391 0.0 51 0.0 8.610594475442584E-4 0.0 10.718898532754702 0.0 52 0.0 8.610594475442584E-4 0.0 11.445632706482055 0.0 53 0.0 8.610594475442584E-4 0.0 12.240821106289179 0.0 54 0.0 8.610594475442584E-4 0.0 13.103602672728526 0.0 55 0.0 8.610594475442584E-4 0.0 14.026227870772198 0.0 56 0.0 8.610594475442584E-4 0.0 14.957033133567542 0.0 57 0.0 8.610594475442584E-4 0.0 15.8891299855342 0.0 58 0.0 8.610594475442584E-4 0.0 16.783340221808913 0.0 59 0.0 8.610594475442584E-4 0.0 17.62588689123097 0.0 60 0.0 8.610594475442584E-4 0.0 18.44303230695047 0.0 61 0.0 8.610594475442584E-4 0.0 19.185696080457394 0.0 62 0.0 8.610594475442584E-4 0.0 19.939984156506164 0.0 63 0.0 8.610594475442584E-4 0.0 20.668009919404835 0.0 64 0.0 8.610594475442584E-4 0.0 21.401632568712543 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGGTAC 15 0.0022226637 70.0 7 ATATCGT 15 0.0022226637 70.0 37 CAACTCG 55 0.0 63.63636 36 CGTATGC 885 0.0 58.13559 41 TCGTATG 875 0.0 58.0 40 TATGCCG 875 0.0 57.6 43 CTCGTAT 845 0.0 57.57396 39 CCGTCTT 870 0.0 56.72414 47 TCTCGTA 750 0.0 56.0 38 ATCTCGT 760 0.0 55.263157 37 TCTTCTG 875 0.0 55.2 50 CGTCTTC 890 0.0 55.056183 48 CTGCTTG 870 0.0 54.712646 54 GTATGCC 930 0.0 54.569897 42 GCCGTCT 905 0.0 54.530384 46 CTTGAAA 895 0.0 53.966484 57 CATCTCG 780 0.0 53.846153 36 CTTCTGC 895 0.0 53.57542 51 GTCTTCT 910 0.0 53.46154 49 TTGAAAA 925 0.0 53.35135 58 >>END_MODULE