##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781195_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 231859 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32444287260792 34.0 33.0 34.0 23.0 34.0 2 31.40107565373783 34.0 33.0 34.0 23.0 34.0 3 31.35599221940921 34.0 33.0 34.0 23.0 34.0 4 31.52636731806831 34.0 33.0 34.0 23.0 34.0 5 31.478156983339012 34.0 33.0 34.0 23.0 34.0 6 34.234431270729196 37.0 34.0 38.0 24.0 38.0 7 34.16581198055715 37.0 34.0 38.0 24.0 38.0 8 34.112516658831446 37.0 34.0 38.0 24.0 38.0 9 34.3727135888622 37.0 34.0 38.0 25.0 38.0 10-11 34.23295192336722 37.5 34.0 38.0 24.0 38.0 12-13 34.186477557481055 37.0 34.0 38.0 24.0 38.0 14-15 34.066165212478275 37.0 34.0 38.0 23.5 38.0 16-17 34.025560793413234 37.0 34.0 38.0 23.5 38.0 18-19 34.08069775165079 37.0 34.0 38.0 23.5 38.0 20-21 34.0130445658784 37.0 34.0 38.0 23.5 38.0 22-23 34.07738970667518 37.0 34.0 38.0 23.5 38.0 24-25 34.07780375141789 37.0 34.0 38.0 23.5 38.0 26-27 33.98755924937139 37.0 34.0 38.0 23.0 38.0 28-29 34.08152799761925 37.0 34.0 38.0 24.0 38.0 30-31 34.151954420574576 37.0 34.0 38.0 24.0 38.0 32-33 34.092273752582386 37.0 34.0 38.0 23.5 38.0 34-35 34.1006107159955 37.0 34.0 38.0 24.0 38.0 36-37 33.96424335479753 37.0 34.0 38.0 23.0 38.0 38-39 33.972187838298275 37.0 34.0 38.0 23.0 38.0 40-41 33.97735908461608 37.0 34.0 38.0 23.5 38.0 42-43 34.03584074804083 37.0 34.0 38.0 23.5 38.0 44-45 34.074258493308434 37.0 34.0 38.0 23.5 38.0 46-47 34.06252291263225 37.0 34.0 38.0 23.5 38.0 48-49 34.03600464075149 37.0 34.0 38.0 23.5 38.0 50-51 33.89579227030221 37.0 34.0 38.0 23.0 38.0 52-53 33.990852198965754 37.0 34.0 38.0 23.5 38.0 54-55 33.9587313841602 37.0 34.0 38.0 23.0 38.0 56-57 33.93308001845949 37.0 34.0 38.0 23.0 38.0 58-59 33.90808206711838 37.0 34.0 38.0 23.0 38.0 60-61 33.89508063090068 37.0 34.0 38.0 23.0 38.0 62-63 33.8690669760501 37.0 34.0 38.0 23.0 38.0 64-65 33.8812662005788 37.0 34.0 38.0 23.0 38.0 66-67 33.79147024700357 37.0 34.0 38.0 23.0 38.0 68-69 33.55615697471308 37.0 34.0 38.0 22.0 38.0 70-71 33.707710289443156 37.0 34.0 38.0 23.0 38.0 72-73 33.6604099905546 37.0 34.0 38.0 22.0 38.0 74-75 33.62696293868257 37.0 34.0 38.0 22.5 38.0 76 32.25848036953493 37.0 31.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 5.0 13 24.0 14 104.0 15 298.0 16 777.0 17 1365.0 18 1885.0 19 2077.0 20 2024.0 21 2005.0 22 2081.0 23 2315.0 24 2721.0 25 3219.0 26 3821.0 27 4496.0 28 5324.0 29 6259.0 30 7607.0 31 8984.0 32 10879.0 33 13403.0 34 17057.0 35 22804.0 36 34630.0 37 75693.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.91436605868221 19.38290081471929 9.948287536821947 25.754445589776548 2 22.858288873841428 19.74389607476958 32.16049409339297 25.237320957996022 3 19.6891214056819 22.036237540919267 29.26735645370678 29.007284599692056 4 13.877830923104128 16.076149728930083 37.42317529187998 32.62284405608581 5 13.927430032907932 34.33552288244148 35.50649317041823 16.230553914232356 6 30.696242112663302 36.408334375633466 17.927706062736405 14.96771744896683 7 29.325581495650372 28.393118231338875 22.889773526151668 19.391526746859082 8 26.283646526552772 33.29221639013366 19.696453448000725 20.72768363531284 9 25.001401713972715 15.100125507312633 21.612272976248494 38.28619980246615 10-11 25.77493217860855 24.205875122380412 27.41191845043755 22.607274248573486 12-13 25.528230519410506 22.655795116859814 26.47902388951906 25.336950474210617 14-15 23.55246076279118 23.94774410309714 23.8457424555441 28.654052678567577 16-17 24.005106551826756 26.508999003704837 25.229988915677197 24.255905528791207 18-19 23.432129009441084 26.163961718113164 26.424896165341867 23.979013107103885 20-21 23.34155672197327 26.398155775708513 26.328070077072702 23.93221742524552 22-23 23.761855265484627 25.749916975403153 26.64399484169258 23.84423291741964 24-25 23.566693550821835 26.028103286911442 26.306073950116232 24.099129212150487 26-27 22.82809811135216 26.27803967066191 26.876679361163465 24.017182856822465 28-29 23.395468797846966 25.969446948360858 27.348733497513578 23.2863507562786 30-31 23.518819627445993 25.88297197865944 26.671166527932925 23.92704186596164 32-33 22.919532992033954 26.292919403603054 26.60345296063556 24.184094643727438 34-35 23.876795811247355 25.454047503008294 26.94288339033637 23.726273295407985 36-37 23.919494175339324 25.58343648510517 26.28580300958772 24.21126632996778 38-39 23.317619760285346 25.929767660517815 26.990541665408717 23.762070913788122 40-41 23.494667017454574 25.124536895268246 27.553383737530133 23.827412349747046 42-43 23.271471023337458 25.284547936461383 27.056530046278127 24.387450993923032 44-45 22.398957987397512 25.16033451364838 27.509391483617197 24.931316015336908 46-47 22.639837142401202 24.90392868079307 27.81819985422175 24.638034322583984 48-49 22.22040119210382 24.912770261236357 28.38255146446763 24.484277082192193 50-51 22.173389861941956 25.052510361900982 27.985542937733708 24.788556838423354 52-53 21.841938419470456 24.97681780737431 28.486709595055615 24.69453417809962 54-55 21.17191914051212 25.434207859086772 28.48067144255776 24.913201557843344 56-57 20.906887375517016 25.569850641985 28.445520769088112 25.077741213409876 58-59 21.043392751629224 25.287782661013807 28.184155025252416 25.484669562104557 60-61 21.07509305224296 24.995147913171365 28.32411077422054 25.60564826036514 62-63 20.57241685679659 24.86403374464653 28.67928353007647 25.884265868480412 64-65 21.483746587365594 25.072134357519012 27.74660461746147 25.69751443765392 66-67 21.49474465084383 24.810768613683315 27.315954955382367 26.378531780090487 68-69 21.183779797204334 25.065233611807177 26.887030479731216 26.86395611125727 70-71 21.79708357234354 25.042159243333234 26.953450157207616 26.20730702711562 72-73 21.723763149155307 24.44093177318974 26.829883679305095 27.00542139834986 74-75 21.576259709564866 25.112460590272534 26.628036867233966 26.683242832928634 76 21.591139442506005 24.921611841679642 26.538542821283624 26.94870589453073 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 1.0 8 1.0 9 2.0 10 2.0 11 1.0 12 1.0 13 3.5 14 9.5 15 12.5 16 22.0 17 32.0 18 44.0 19 79.5 20 127.0 21 151.0 22 191.0 23 290.0 24 517.5 25 686.0 26 804.0 27 1032.5 28 1373.5 29 1604.0 30 1879.0 31 2409.5 32 3273.5 33 3882.0 34 4266.0 35 5228.5 36 6441.5 37 7076.0 38 7982.5 39 9752.0 40 11451.0 41 12959.5 42 13632.0 43 13848.0 44 14342.5 45 14802.5 46 14984.0 47 14646.5 48 13509.5 49 11905.0 50 11100.0 51 10550.0 52 9024.0 53 7563.0 54 7078.0 55 6533.5 56 5418.5 57 4517.5 58 4187.0 59 3729.0 60 3101.0 61 2728.5 62 2526.0 63 2365.5 64 2180.0 65 2191.5 66 2118.0 67 2008.0 68 1941.0 69 1898.0 70 1868.0 71 1814.0 72 1697.5 73 1545.0 74 1470.5 75 1432.0 76 1383.5 77 1193.5 78 964.5 79 877.0 80 773.0 81 579.5 82 434.5 83 379.0 84 316.0 85 204.0 86 136.0 87 117.0 88 90.0 89 53.0 90 33.5 91 19.0 92 14.0 93 11.0 94 5.0 95 3.5 96 5.0 97 4.0 98 2.0 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 231859.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.168173192198054 #Duplication Level Percentage of deduplicated Percentage of total 1 68.44444251224611 31.59954875948821 2 15.421883583279259 14.240003844455055 3 6.1516743144892 8.520346955200008 4 2.7455919369629513 5.070358562432322 5 1.399104194727138 3.229704238804665 6 0.9163596176186839 2.5383989719533466 7 0.6914820449659114 2.234712396789703 8 0.5780567163361132 2.135025807577518 9 0.463638961204428 1.9264827473583144 >10 3.1031967926059916 26.01256595605625 >50 0.08257945908037774 2.3913370668802876 >100 0.0019898664838645243 0.1015146930043303 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.312966069895928E-4 0.0 2 0.0 0.0 0.0 4.312966069895928E-4 0.0 3 0.0 0.0 0.0 4.312966069895928E-4 0.0 4 0.0 0.0 0.0 4.312966069895928E-4 0.0 5 0.0 0.0 0.0 4.312966069895928E-4 0.0 6 0.0 0.0 0.0 4.312966069895928E-4 0.0 7 0.0 0.0 0.0 4.312966069895928E-4 0.0 8 0.0 0.0 0.0 4.312966069895928E-4 0.0 9 0.0 0.0 0.0 0.0012938898209687785 0.0 10 0.0 0.0 0.0 0.0012938898209687785 0.0 11 0.0 0.0 0.0 0.0012938898209687785 0.0 12 0.0 0.0 0.0 0.002587779641937557 0.0 13 0.0 0.0 0.0 0.002587779641937557 0.0 14 0.0 0.0 0.0 0.002587779641937557 0.0 15 0.0 0.0 0.0 0.002587779641937557 0.0 16 0.0 0.0 0.0 0.002587779641937557 0.0 17 0.0 0.0 0.0 0.002587779641937557 0.0 18 0.0 0.0 0.0 0.002587779641937557 0.0 19 0.0 0.0 0.0 0.002587779641937557 0.0 20 0.0 0.0 0.0 0.002587779641937557 0.0 21 0.0 0.0 0.0 0.003881669462906335 0.0 22 0.0 0.0 0.0 0.006900745711833485 0.0 23 0.0 0.0 0.0 0.006900745711833485 0.0 24 0.0 0.0 0.0 0.008194635532802263 0.0 25 0.0 0.0 0.0 0.008625932139791856 0.0 26 0.0 0.0 0.0 0.00905722874678145 0.0 27 0.0 0.0 0.0 0.017683160886573304 0.0 28 0.0 0.0 0.0 0.02932816927529231 0.0 29 0.0 0.0 0.0 0.04485484712691765 0.0 30 0.0 0.0 0.0 0.060812821585532584 0.0 31 0.0 0.0 0.0 0.07461431300919956 0.0 32 0.0 0.0 0.0 0.09833562639362717 0.0 33 0.0 0.0 0.0 0.1371523210226905 0.0 34 0.0 0.0 0.0 0.1919269901103688 0.0 35 0.0 0.0 0.0 0.28465576061313125 0.0 36 0.0 0.0 0.0 0.4351782764524991 0.0 37 0.0 0.0 0.0 0.6616089951220354 0.0 38 0.0 0.0 0.0 0.9544593912679689 0.0 39 0.0 0.0 0.0 1.3020844565015808 0.0 40 0.0 0.0 0.0 1.6919765892201726 0.0 41 0.0 0.0 0.0 2.101277069253296 0.0 42 0.0 0.0 0.0 2.6494550567370685 0.0 43 0.0 0.0 0.0 3.2670717979461656 0.0 44 0.0 0.0 0.0 3.9524021064526287 0.0 45 0.0 0.0 0.0 4.745987863313479 0.0 46 0.0 0.0 0.0 5.556825484453914 0.0 47 0.0 0.0 0.0 6.378445520769088 0.0 48 0.0 0.0 0.0 7.150897743887449 0.0 49 0.0 0.0 0.0 7.886258458804704 0.0 50 0.0 0.0 0.0 8.541829301428885 0.0 51 0.0 0.0 0.0 9.220258864223515 0.0 52 0.0 0.0 0.0 9.92456622343752 0.0 53 0.0 0.0 0.0 10.617228574262807 0.0 54 0.0 0.0 0.0 11.401325805769886 0.0 55 0.0 0.0 0.0 12.245373265648519 0.0 56 0.0 0.0 0.0 13.051035327505078 0.0 57 0.0 0.0 0.0 13.760518246002958 0.0 58 0.0 0.0 0.0 14.49027210502935 0.0 59 0.0 0.0 0.0 15.172583337286886 0.0 60 0.0 0.0 0.0 15.830741959553004 0.0 61 0.0 0.0 0.0 16.442320548264245 0.0 62 0.0 0.0 0.0 17.143177534622335 0.0 63 0.0 0.0 0.0 17.85783601240409 0.0 64 0.0 0.0 0.0 18.53497168537775 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCATG 20 0.0069450745 52.5 19 GATCATA 20 0.0069450745 52.5 1 ACAGTCG 30 5.8696436E-4 46.666664 41 TACCACG 30 5.8696436E-4 46.666664 20 ATCACGT 30 5.8696436E-4 46.666664 39 ATCGTAC 30 5.8696436E-4 46.666664 25 TACGAAC 30 5.8696436E-4 46.666664 28 CATCGTA 30 5.8696436E-4 46.666664 24 ACGAACG 40 4.58341E-5 43.75 29 CACGCTA 35 0.0012536967 40.0 23 CCGAAAT 35 0.0012536967 40.0 47 AACGCAC 45 9.179189E-5 38.88889 32 TACATGC 40 0.0024154654 35.0 2 TACGTTG 40 0.0024154654 35.0 46 GACTATC 50 1.7062832E-4 35.0 38 GTATAGA 65 2.096829E-5 32.307693 1 CGTATTG 55 2.9861426E-4 31.81818 43 CGCACTC 55 2.9861426E-4 31.81818 34 CTACTGA 45 0.004301439 31.111113 33 ACTGATC 45 0.004301439 31.111113 24 >>END_MODULE