SRR1781195_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781195_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	208820
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT	4333	2.074992816780002	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG	465	0.22267981994061872	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC	270	0.12929795996552054	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTACCTCGTATGCCGT	231	0.11062158797050092	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCTT	635	0.0	58.425194	47
CGTCTTC	640	0.0	57.96875	48
TCGTATG	635	0.0	57.874016	40
TATGCCG	655	0.0	57.709923	43
CGTATGC	655	0.0	57.17557	41
CTTGAAA	620	0.0	57.01613	57
GCCGTCT	650	0.0	56.538464	46
CTCGTAT	645	0.0	56.434105	39
TCTCGTA	565	0.0	56.37168	38
ATGCCGT	665	0.0	56.315792	44
CCGATAC	25	2.3864926E-4	55.999996	44
TGCCGTC	670	0.0	55.895523	45
GTCTTCT	650	0.0	55.46154	49
ATCTCGT	565	0.0	55.132744	37
TCTTCTG	650	0.0	54.923077	50
GTATGCC	690	0.0	54.78261	42
GCTTGAA	670	0.0	53.805973	56
TGCTTGA	665	0.0	53.157894	55
ATTATCT	585	0.0	52.649574	34
TTGAAAA	665	0.0	52.63158	58