##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781194_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 113312 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.990901228466534 34.0 34.0 34.0 27.0 34.0 2 32.28756883648687 34.0 34.0 34.0 27.0 34.0 3 32.31535936176221 34.0 34.0 34.0 31.0 34.0 4 32.456315306410616 34.0 34.0 34.0 31.0 34.0 5 32.47414219147134 34.0 34.0 34.0 31.0 34.0 6 35.53352689918102 38.0 37.0 38.0 31.0 38.0 7 35.4062853007625 38.0 36.0 38.0 30.0 38.0 8 35.21686140920644 38.0 36.0 38.0 27.0 38.0 9 35.550100607173114 38.0 37.0 38.0 31.0 38.0 10-11 35.479066647839595 38.0 36.5 38.0 31.0 38.0 12-13 35.44790048715052 38.0 37.0 38.0 31.0 38.0 14-15 35.43083698107879 38.0 36.5 38.0 31.0 38.0 16-17 35.408226842699804 38.0 36.5 38.0 30.5 38.0 18-19 35.45185417255013 38.0 36.5 38.0 31.0 38.0 20-21 35.395496505224514 38.0 36.0 38.0 29.5 38.0 22-23 35.435434905393954 38.0 36.5 38.0 31.0 38.0 24-25 35.44722977266309 38.0 36.5 38.0 31.0 38.0 26-27 35.38658306269416 38.0 36.0 38.0 30.0 38.0 28-29 35.459368822366564 38.0 36.5 38.0 31.0 38.0 30-31 35.53493010449026 38.0 37.0 38.0 31.0 38.0 32-33 35.504068412877714 38.0 36.5 38.0 31.0 38.0 34-35 35.516388378988985 38.0 37.0 38.0 31.0 38.0 36-37 35.43243434058176 38.0 36.0 38.0 31.0 38.0 38-39 35.43092964558034 38.0 36.0 38.0 31.0 38.0 40-41 35.43130471618187 38.0 36.0 38.0 31.0 38.0 42-43 35.49844676645016 38.0 37.0 38.0 31.0 38.0 44-45 35.48664307399039 38.0 36.5 38.0 31.0 38.0 46-47 35.458587792996326 38.0 36.5 38.0 31.0 38.0 48-49 35.454166372493646 38.0 36.0 38.0 31.0 38.0 50-51 35.337347324202206 38.0 36.0 38.0 29.5 38.0 52-53 35.42291195989833 38.0 36.0 38.0 31.0 38.0 54-55 35.39700120022593 38.0 36.0 38.0 31.0 38.0 56-57 35.35625088251906 38.0 36.0 38.0 30.0 38.0 58-59 35.36996081615363 38.0 36.0 38.0 30.5 38.0 60-61 35.36868998870376 38.0 36.0 38.0 30.5 38.0 62-63 35.32815588816719 38.0 36.0 38.0 29.0 38.0 64-65 35.338940271109855 38.0 36.0 38.0 29.5 38.0 66-67 35.243544373058455 38.0 36.0 38.0 27.0 38.0 68-69 34.95916584298221 38.0 36.0 38.0 27.0 38.0 70-71 35.162233479243156 38.0 36.0 38.0 27.0 38.0 72-73 35.168146356961316 38.0 36.0 38.0 27.0 38.0 74-75 35.16085233691048 38.0 36.0 38.0 27.0 38.0 76 34.04043702343971 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 10.0 14 55.0 15 107.0 16 214.0 17 351.0 18 402.0 19 478.0 20 475.0 21 508.0 22 528.0 23 685.0 24 712.0 25 880.0 26 1027.0 27 1263.0 28 1445.0 29 1755.0 30 2317.0 31 2870.0 32 3636.0 33 4811.0 34 6846.0 35 10236.0 36 18664.0 37 53035.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.457780288054224 19.339522733691048 9.886861056198812 26.315835922055918 2 21.867939847500708 20.00670714487433 33.45894521321661 24.66640779440836 3 19.252153346512284 22.14328579497317 29.650875458909915 28.953685399604634 4 13.108938153064106 16.151863880259814 37.499117480937585 33.240080485738495 5 13.117763343688225 34.536500988421345 36.55040948884496 15.79532617904547 6 30.202449872917253 37.61649251623835 18.1340016944366 14.047055916407794 7 29.123129059587686 29.49290454673821 22.445989833380402 18.937976560293702 8 25.398898616210108 34.78272380683423 20.317353854843265 19.5010237221124 9 24.51461451567354 16.370728607737927 21.77262778876024 37.3420290878283 10-11 24.79128424173962 25.051627365151084 27.922020615645298 22.235067777463993 12-13 24.711416266591357 23.183775769556622 27.799791725501272 24.30501623835075 14-15 22.618963569613104 24.548150240045185 24.7745163795538 28.058369810787916 16-17 22.746928833662807 27.888926150804856 25.89487432928551 23.469270686246823 18-19 22.11681022310082 27.549156311776336 27.238068342276193 23.095965122846653 20-21 22.40539395650946 27.498852725218864 27.17540948884496 22.920343829426713 22-23 22.439812199943518 26.80033888731997 27.741104207850892 23.018744704885624 24-25 22.2730160971477 27.314847500706012 27.094217735103076 23.31791866704321 26-27 21.705997599548148 27.429133719288334 27.761843405817565 23.10302527534595 28-29 22.14681587122282 27.10039536853996 28.30238633154476 22.45040242869246 30-31 22.320230866986726 27.388979101948603 27.524445778028806 22.766344253035868 32-33 21.824696413442528 27.459139367410334 27.46752329850325 23.248640920643886 34-35 22.558069754306693 26.913742586839877 27.82406099971759 22.704126659135838 36-37 22.43451708556905 27.02229243151652 27.25571872352443 23.28747175939 38-39 21.72938435470206 27.697860773792716 27.778611268003388 22.794143603501833 40-41 22.11681022310082 27.040384072295964 28.108232137814177 22.73457356678904 42-43 21.78630683422762 27.14231502400452 27.983355690482913 23.08802245128495 44-45 21.705997599548148 26.924774075120023 28.054839734538266 23.314388590793563 46-47 21.792043208133297 26.49807610844394 28.395050833097997 23.314829850324767 48-49 21.346812341146567 26.64192671561706 28.83366280711663 23.17759813611974 50-51 21.342841005365713 26.732826179045468 28.395050833097997 23.529281982490822 52-53 21.376817989268567 26.50469500141203 28.768356396498163 23.35013061282124 54-55 20.963357808528666 26.885060717311493 28.671279299632875 23.480302174526972 56-57 20.785971476983903 26.876235526687374 28.74320460321943 23.59458839310929 58-59 20.977919373058455 26.66531347077097 28.57111338604914 23.785653770121435 60-61 21.020721547585428 26.583680457497884 28.369016520756844 24.02658147415984 62-63 20.383101524992938 26.46851171985315 29.050762496469922 24.09762425868399 64-65 20.872458345100252 26.692230302174526 28.43608796950014 23.999223383225075 66-67 20.965564106184694 26.532053092346796 28.06631248234962 24.436070319118894 68-69 20.86539819260096 26.573972747811354 27.824502259248803 24.736126800338887 70-71 21.524639932222538 26.401881530641063 27.882307257836768 24.191171279299635 72-73 21.366669020050832 26.343635272521887 27.812146992375038 24.477548715052244 74-75 21.852937023439704 26.14727478113527 27.400893109291165 24.598895086133858 76 22.045326179045468 25.8410406664784 27.2760166619599 24.837616492516236 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 1.0 10 1.0 11 1.5 12 2.0 13 2.0 14 3.5 15 18.5 16 32.0 17 32.0 18 56.0 19 97.5 20 156.0 21 197.0 22 252.0 23 341.0 24 473.0 25 571.0 26 672.0 27 867.5 28 1120.0 29 1278.0 30 1465.5 31 1818.0 32 2227.5 33 2472.0 34 2765.5 35 3325.5 36 3923.0 37 4254.0 38 4627.5 39 5438.5 40 6115.5 41 6633.5 42 6912.0 43 6841.0 44 6849.5 45 6786.0 46 6643.0 47 6496.0 48 5920.5 49 5326.5 50 5161.0 51 4791.5 52 4023.0 53 3387.0 54 3150.0 55 2934.0 56 2463.0 57 2033.5 58 1859.0 59 1655.0 60 1318.0 61 1140.5 62 1096.0 63 1008.5 64 866.0 65 776.0 66 766.0 67 791.0 68 759.0 69 703.0 70 654.5 71 630.0 72 580.0 73 506.5 74 473.0 75 463.0 76 404.0 77 336.0 78 292.5 79 258.0 80 233.5 81 177.0 82 121.5 83 98.0 84 88.5 85 57.0 86 36.5 87 38.0 88 28.5 89 18.5 90 13.0 91 5.5 92 3.0 93 2.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 113312.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.4710886755154 #Duplication Level Percentage of deduplicated Percentage of total 1 74.81502021278148 45.241457215475855 2 14.432071919557506 17.454462016379555 3 4.359247529954321 7.908253318271674 4 1.9074444330935043 4.613809658288619 5 1.0974737671662702 3.318271674668173 6 0.7428379620846164 2.6952132166054787 7 0.553115103398958 2.341323072578368 8 0.3925803768187855 1.899181022310082 9 0.3400417390289108 1.8506424738774359 >10 1.352869923089272 12.424985879695 >50 0.0072970330263714776 0.25240045184975995 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 8.825190624117481E-4 0.0 3 0.0 0.0 0.0 8.825190624117481E-4 0.0 4 0.0 0.0 0.0 8.825190624117481E-4 0.0 5 0.0 0.0 0.0 8.825190624117481E-4 0.0 6 0.0 0.0 0.0 8.825190624117481E-4 0.0 7 0.0 0.0 0.0 8.825190624117481E-4 0.0 8 0.0 0.0 0.0 8.825190624117481E-4 0.0 9 0.0 0.0 0.0 8.825190624117481E-4 0.0 10 0.0 0.0 0.0 0.0017650381248234962 0.0 11 0.0 0.0 0.0 0.0017650381248234962 0.0 12 0.0 0.0 0.0 0.0017650381248234962 0.0 13 0.0 0.0 0.0 0.0017650381248234962 0.0 14 0.0 0.0 0.0 0.0017650381248234962 0.0 15 0.0 0.0 0.0 0.0017650381248234962 0.0 16 0.0 0.0 0.0 0.0017650381248234962 0.0 17 0.0 0.0 0.0 0.0017650381248234962 0.0 18 0.0 0.0 0.0 0.0017650381248234962 0.0 19 0.0 0.0 0.0 0.0017650381248234962 0.0 20 0.0 0.0 0.0 0.0017650381248234962 0.0 21 0.0 0.0 0.0 0.0035300762496469924 0.0 22 0.0 0.0 0.0 0.0035300762496469924 0.0 23 0.0 0.0 0.0 0.0035300762496469924 0.0 24 0.0 0.0 0.0 0.0035300762496469924 0.0 25 0.0 0.0 0.0 0.0035300762496469924 0.0 26 0.0 0.0 0.0 0.0052951143744704885 0.0 27 0.0 0.0 0.0 0.00970770968652923 0.0 28 0.0 0.0 0.0 0.013237785936176222 0.0 29 0.0 0.0 0.0 0.01941541937305846 0.0 30 0.0 0.0 0.0 0.02471053374752895 0.0 31 0.0 0.0 0.0 0.03530076249646993 0.0 32 0.0 0.0 0.0 0.04500847218299915 0.0 33 0.0 0.0 0.0 0.06618892968088111 0.0 34 0.0 0.0 0.0 0.09619457780288054 0.0 35 0.0 0.0 0.0 0.13502541654899747 0.0 36 0.0 0.0 0.0 0.20297938435470206 0.0 37 0.0 0.0 0.0 0.3256495340299351 0.0 38 0.0 0.0 0.0 0.45096724089240325 0.0 39 0.0 0.0 0.0 0.6433563964981643 0.0 40 0.0 0.0 0.0 0.8604560858514544 0.0 41 0.0 0.0 0.0 1.1190341711380967 0.0 42 0.0 0.0 0.0 1.3987927139226208 0.0 43 0.0 0.0 0.0 1.71649957639085 0.0 44 0.0 0.0 0.0 2.1242233832250776 0.0 45 0.0 0.0 0.0 2.5654829144309517 0.0 46 0.0 0.0 0.0 3.0632236656311775 0.0 47 0.0 0.0 0.0 3.5397839593335214 0.0 48 0.0 0.0 0.0 4.024286924597571 0.0 49 0.0 0.0 0.0 4.480549279864445 0.0 50 0.0 0.0 0.0 4.905040948884496 0.0 51 0.0 0.0 0.0 5.356008189776899 0.0 52 0.0 0.0 0.0 5.8105055069189495 0.0 53 0.0 0.0 0.0 6.257942671561706 0.0 54 0.0 0.0 0.0 6.744210674950579 0.0 55 0.0 0.0 0.0 7.316965546455804 0.0 56 0.0 0.0 0.0 7.807646145156736 0.0 57 0.0 0.0 0.0 8.300974301044903 0.0 58 0.0 0.0 0.0 8.827838181304717 0.0 59 0.0 0.0 0.0 9.321166337192883 0.0 60 0.0 0.0 0.0 9.795961592770404 0.0 61 0.0 0.0 0.0 10.246046314600395 0.0 62 0.0 0.0 0.0 10.71731149392827 0.0 63 0.0 0.0 0.0 11.196519344817847 0.0 64 0.0 0.0 0.0 11.693377576955662 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCTGCGC 20 0.006935955 52.5 66 AATGCGT 20 0.006935955 52.5 6 AAATGCG 20 0.006935955 52.5 5 CGTAGGG 35 0.0012509844 40.000004 10 GCGATGT 35 0.0012509844 40.000004 19 GCCTACG 35 0.0012509844 40.000004 1 GCGCGAT 40 0.0024102717 35.0 17 AACACGA 40 0.0024102717 35.0 26 TCTATAC 55 2.9765745E-4 31.81818 3 TTACTCC 45 0.004292246 31.111113 4 CGCGATG 45 0.004292246 31.111113 18 TATTCAC 45 0.004292246 31.111113 20 CGATGTA 45 0.004292246 31.111113 20 ACAAGCC 45 0.004292246 31.111113 4 AACAGAT 60 4.9563247E-4 29.166666 31 ACACCTC 85 3.9177357E-6 28.82353 6 CTATACT 85 3.9177357E-6 28.82353 4 CCTACCA 50 0.0071833953 28.000002 27 GGAGTTT 50 0.0071833953 28.000002 68 TAGATGT 50 0.0071833953 28.000002 4 >>END_MODULE