##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781194_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 106369 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61307335783922 34.0 34.0 34.0 31.0 34.0 2 32.87100565014243 34.0 34.0 34.0 31.0 34.0 3 32.99437806127725 34.0 34.0 34.0 31.0 34.0 4 33.183436903609135 34.0 34.0 34.0 32.0 34.0 5 33.09728398311538 34.0 34.0 34.0 31.0 34.0 6 36.208886047626656 38.0 37.0 38.0 34.0 38.0 7 36.06495313484192 38.0 36.0 38.0 32.0 38.0 8 35.74976731942577 38.0 36.0 38.0 31.0 38.0 9 35.86739557577866 38.0 36.0 38.0 31.0 38.0 10-11 35.76118511972473 38.0 36.0 38.0 31.0 38.0 12-13 35.73419887373201 38.0 36.0 38.0 31.0 38.0 14-15 35.779498726132616 38.0 36.0 38.0 31.0 38.0 16-17 35.669137624683884 38.0 36.0 38.0 31.0 38.0 18-19 35.68639359211801 38.0 36.0 38.0 31.0 38.0 20-21 35.59635796143613 38.0 36.0 38.0 31.0 38.0 22-23 35.63990448344913 38.0 36.0 38.0 31.0 38.0 24-25 35.66475194840602 38.0 36.0 38.0 31.0 38.0 26-27 35.39121830608542 38.0 36.0 38.0 31.0 38.0 28-29 35.34385018191391 38.0 36.0 38.0 31.0 38.0 30-31 35.38146922505617 38.0 36.0 38.0 31.0 38.0 32-33 35.331826001936655 38.0 36.0 38.0 31.0 38.0 34-35 35.34047513843319 38.0 36.0 38.0 31.0 38.0 36-37 35.285614229709786 38.0 36.0 38.0 30.5 38.0 38-39 35.2783752785116 38.0 36.0 38.0 30.5 38.0 40-41 35.27000817907473 38.0 36.0 38.0 30.5 38.0 42-43 35.26279273096485 38.0 36.0 38.0 30.0 38.0 44-45 35.211490189810945 37.5 35.5 38.0 27.5 38.0 46-47 35.23499327811675 38.0 36.0 38.0 28.5 38.0 48-49 35.24469065235172 38.0 36.0 38.0 29.5 38.0 50-51 35.139312205623824 37.0 35.0 38.0 27.0 38.0 52-53 35.14260263798663 37.0 35.0 38.0 27.0 38.0 54-55 35.163139636548244 37.0 35.0 38.0 27.0 38.0 56-57 35.087088343408325 37.0 35.0 38.0 27.0 38.0 58-59 35.07426505842868 37.0 35.0 38.0 27.0 38.0 60-61 35.07915370079628 37.0 35.0 38.0 27.0 38.0 62-63 35.04781468284933 37.0 35.0 38.0 27.0 38.0 64-65 34.98456317160075 37.0 35.0 38.0 27.0 38.0 66-67 34.97770497043311 37.0 35.0 38.0 27.0 38.0 68-69 34.92146208011732 37.0 35.0 38.0 27.0 38.0 70-71 34.8929387321494 37.0 35.0 38.0 27.0 38.0 72-73 34.860828812906014 37.0 35.0 38.0 27.0 38.0 74-75 34.86668108189416 37.0 35.0 38.0 27.0 38.0 76 33.8805949101712 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 5.0 21 15.0 22 24.0 23 68.0 24 143.0 25 278.0 26 510.0 27 949.0 28 1440.0 29 2298.0 30 3377.0 31 4666.0 32 6370.0 33 8312.0 34 10792.0 35 14021.0 36 19981.0 37 33119.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.49546390395698 21.056886874935365 10.583910725869378 25.863738495238277 2 21.637883217854824 21.289097387396705 32.70783780988822 24.365181584860252 3 19.767977512245107 23.910161795259896 28.483862779569236 27.83799791292576 4 14.273895589880512 17.427069916987094 36.86882456354765 31.430209929584745 5 14.006900506726582 35.8111855897865 35.58461581851856 14.597298084968365 6 31.229963617219305 38.161494420366836 17.087685321851293 13.52085664056257 7 28.98682886931343 30.10275550207297 21.87667459504179 19.03374103357181 8 25.40965882917015 36.34517575609435 18.879560774285743 19.365604640449753 9 24.742171121285335 15.9294531301413 21.316360969831436 38.01201477874193 10-11 24.909043048256542 25.714258853613366 27.5963861651421 21.780311932987996 12-13 24.786356927300247 23.57500775601914 27.52728708552304 24.111348231157574 14-15 22.386221549511607 24.852635636322614 24.17621675488159 28.58492605928419 16-17 23.20553920785191 28.218747943479773 25.532344950126447 23.04336789854187 18-19 22.85064257443428 27.64292227998759 26.80198178040595 22.704453365172185 20-21 22.192556101871787 27.547969803232146 26.730062330190187 23.52941176470588 22-23 22.557324032377853 27.522586467861878 27.144186746138445 22.77590275362183 24-25 22.986490424841826 27.688988333066966 26.583403059161974 22.741118182929238 26-27 22.230631104927188 27.734114262614106 27.19213304628228 22.843121586176423 28-29 22.237682031418927 27.815434948152184 27.73740469497692 22.209478325451965 30-31 22.530530511709237 28.000169222235805 27.210465455160808 22.25883481089415 32-33 21.979618121821208 28.125675713788787 27.448786770581656 22.445919393808346 34-35 22.934313568802942 27.354304355592323 27.204354652201303 22.507027423403436 36-37 23.198958343126286 27.41306207635683 26.754035480262107 22.633944100254773 38-39 21.937782624636878 27.91508804256879 27.741635250871965 22.405494081922363 40-41 22.301140369844596 26.91855709840273 28.052346078274688 22.727956453477987 42-43 22.452500258533973 27.09059970480121 27.78770130395134 22.66919873271348 44-45 21.70416192687719 27.321870093730315 28.030253175267227 22.94371480412526 46-47 22.502326805742275 26.695747821263716 27.702150062518214 23.099775310475795 48-49 21.8945369421542 26.753565418495988 28.28079609660709 23.071101542742717 50-51 21.599338153033308 26.65767281820831 28.606078838759412 23.136910189998964 52-53 21.479002340907595 26.362944090853542 29.283907905498786 22.874145662740084 54-55 21.030563416032866 27.099060816591305 28.421814626441915 23.44856114093392 56-57 21.198845528302417 26.574471885605767 28.562833156276735 23.66384942981508 58-59 20.814335003619476 26.5899839238876 29.2171591347103 23.378521937782626 60-61 21.066758172023803 27.087779334204516 28.176442384529327 23.669020109242357 62-63 20.07257753668832 27.235378728764957 28.560482847446156 24.131560887100566 64-65 20.57695381173086 27.574293262134645 27.725183089057904 24.12356983707659 66-67 20.47213003788698 27.432334608767594 27.493912700128796 24.60162265321663 68-69 20.296796999125686 27.931540204382856 27.217986443418663 24.55367635307279 70-71 20.855230377271575 27.45959819120232 27.130554954921077 24.554616476605027 72-73 20.542169241038273 27.037012663463976 27.1780311932988 25.24278690219895 74-75 20.525717079224208 27.54985005029661 26.851808327614247 25.07262454286493 76 20.99295847474358 27.33409169964933 26.67600522708684 24.996944598520248 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.5 14 6.0 15 9.5 16 24.5 17 40.0 18 59.0 19 99.5 20 149.0 21 177.0 22 226.0 23 326.5 24 455.0 25 532.0 26 647.0 27 883.5 28 1171.0 29 1337.0 30 1467.5 31 1734.5 32 2126.5 33 2382.0 34 2579.0 35 3057.0 36 3690.5 37 4043.0 38 4347.0 39 5123.0 40 5783.5 41 6146.5 42 6321.0 43 6455.0 44 6498.5 45 6400.5 46 6393.0 47 6171.0 48 5627.5 49 5120.5 50 4935.0 51 4495.5 52 3633.0 53 3063.0 54 2916.0 55 2747.5 56 2305.5 57 1885.5 58 1739.0 59 1508.0 60 1191.5 61 1045.5 62 985.0 63 879.5 64 761.5 65 702.0 66 642.5 67 630.0 68 650.5 69 635.0 70 572.5 71 546.0 72 547.0 73 508.5 74 456.5 75 444.0 76 407.5 77 334.5 78 266.0 79 234.0 80 218.5 81 183.5 82 128.0 83 92.0 84 83.0 85 58.5 86 32.0 87 21.0 88 15.5 89 8.0 90 6.5 91 5.5 92 4.0 93 3.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 106369.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.38319435173782 #Duplication Level Percentage of deduplicated Percentage of total 1 74.49127341232153 44.980210399646516 2 14.68028460664186 17.728849570833606 3 4.4325771847607776 8.029595088794668 4 1.9150228090115056 4.6254077785821055 5 1.1038627411293962 3.3327379217629196 6 0.7815784147347772 2.8316520790831916 7 0.5153435364087873 2.1782662241818573 8 0.40168771115851093 1.9404149705271272 9 0.3580936959940214 1.94605571172052 >10 1.314048171386757 11.712999088080174 >50 0.004670787339052453 0.1814438417208021 >100 0.0 0.0 >500 0.0015569291130174846 0.5123673250665137 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT 545 0.5123673250665137 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 9.401235322321353E-4 0.0 11 0.0 0.0 0.0 9.401235322321353E-4 0.0 12 0.0 0.0 0.0 9.401235322321353E-4 0.0 13 0.0 0.0 0.0 9.401235322321353E-4 0.0 14 0.0 0.0 0.0 9.401235322321353E-4 0.0 15 0.0 0.0 0.0 9.401235322321353E-4 0.0 16 0.0 0.0 0.0 9.401235322321353E-4 0.0 17 0.0 0.0 0.0 9.401235322321353E-4 0.0 18 0.0 0.0 0.0 9.401235322321353E-4 0.0 19 0.0 0.0 0.0 9.401235322321353E-4 0.0 20 0.0 0.0 0.0 9.401235322321353E-4 0.0 21 0.0 0.0 0.0 0.002820370596696406 0.0 22 0.0 0.0 0.0 0.002820370596696406 0.0 23 0.0 0.0 0.0 0.003760494128928541 0.0 24 0.0 0.0 0.0 0.003760494128928541 0.0 25 0.0 0.0 0.0 0.003760494128928541 0.0 26 0.0 0.0 0.0 0.005640741193392812 0.0 27 0.0 0.0 0.0 0.008461111790089218 0.0 28 0.0 0.0 0.0 0.01222160591901776 0.0 29 0.0 0.0 0.0 0.016922223580178437 0.0 30 0.0 0.0 0.0 0.022562964773571247 0.0 31 0.0 0.0 0.0 0.03478457069258901 0.0 32 0.0 0.0 0.0 0.04418580601491036 0.0 33 0.0 0.0 0.0 0.0639284001917852 0.0 34 0.0 0.0 0.0 0.09777284735214208 0.0 35 0.0 0.0 0.0 0.13725803570589176 0.0 36 0.0 0.0 0.0 0.21152779475223044 0.0 37 0.0 0.0 0.0 0.333743853942408 0.0 38 0.0 0.0 0.0 0.45972040726151414 0.0 39 0.0 0.0 0.0 0.6543259784335662 0.0 40 0.0 0.0 0.0 0.8714945143791895 0.0 41 0.0 0.0 0.0 1.1243877445496337 0.0 42 0.0 0.0 0.0 1.4007840630258817 0.0 43 0.0 0.0 0.0 1.7147853227914147 0.0 44 0.0 0.0 0.0 2.114337823990072 0.0 45 0.0 0.0 0.0 2.543974278220158 0.0 46 0.0 0.0 0.0 3.036599009109797 0.0 47 0.0 0.0 0.0 3.514181763483722 0.0 48 0.0 0.0 0.0 4.004926247308896 0.0 49 0.0 0.0 0.0 4.459005913377018 0.0 50 0.0 0.0 0.0 4.887702244074871 0.0 51 0.0 0.0 0.0 5.3361411689496 0.0 52 0.0 0.0 0.0 5.774238734969775 0.0 53 0.0 0.0 0.0 6.22079741278004 0.0 54 0.0 0.0 0.0 6.703080784815125 0.0 55 0.0 0.0 0.0 7.267154904154406 0.0 56 0.0 0.0 0.0 7.741917287931634 0.0 57 0.0 0.0 0.0 8.265566095384933 0.0 58 0.0 0.0 0.0 8.77887354398368 0.0 59 0.0 0.0 0.0 9.291240869050194 0.0 60 0.0 0.0 0.0 9.766943376359654 0.0 61 0.0 0.0 0.0 10.207861312976526 0.0 62 0.0 0.0 0.0 10.68544406735045 0.0 63 0.0 0.0 0.0 11.144224351079732 0.0 64 0.0 0.0 0.0 11.634968834904907 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACTTCG 15 0.002219342 70.0 59 GATCTCG 70 0.0 55.0 36 CTCGTAT 90 0.0 54.444447 39 GCGAAGT 20 0.00693479 52.5 32 GGTTATC 20 0.00693479 52.5 7 CGTATGC 100 0.0 52.499996 41 CGTCTTC 100 0.0 52.499996 48 TATGCCG 100 0.0 52.499996 43 TCGTATG 100 0.0 52.499996 40 TCTCGTA 75 0.0 51.333336 38 ATGCCGT 100 0.0 48.999996 44 ATCTCGT 80 0.0 48.125 37 CCGTCTT 110 0.0 47.727276 47 GTATGCC 115 0.0 45.652176 42 TGCCGTC 110 0.0 44.545456 45 GCCGTCT 120 0.0 40.833332 46 AGATCTC 95 3.6379788E-12 40.526318 35 TACAGAT 110 0.0 38.18182 32 CTTGAAA 120 0.0 37.916664 57 TCTTCTG 135 0.0 36.296295 50 >>END_MODULE