##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781193_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 109065 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.75808921285472 34.0 34.0 34.0 31.0 34.0 2 32.92906065190483 34.0 34.0 34.0 31.0 34.0 3 33.024141566955485 34.0 34.0 34.0 31.0 34.0 4 33.17119149131252 34.0 34.0 34.0 32.0 34.0 5 33.11836977948929 34.0 34.0 34.0 31.0 34.0 6 36.31460138449548 38.0 37.0 38.0 34.0 38.0 7 36.18731031953422 38.0 37.0 38.0 33.0 38.0 8 35.87650483656535 38.0 36.0 38.0 31.0 38.0 9 35.95247788016321 38.0 36.0 38.0 32.0 38.0 10-11 35.82479713932059 38.0 36.0 38.0 31.0 38.0 12-13 35.75527437766469 38.0 36.0 38.0 31.0 38.0 14-15 35.78951084215835 38.0 36.0 38.0 31.0 38.0 16-17 35.70965479301334 38.0 36.0 38.0 31.0 38.0 18-19 35.720730756888095 38.0 36.0 38.0 31.0 38.0 20-21 35.63901343235685 38.0 36.0 38.0 31.0 38.0 22-23 35.719245404116805 38.0 36.0 38.0 31.0 38.0 24-25 35.69989455829093 38.0 36.0 38.0 31.0 38.0 26-27 35.41963049557603 38.0 36.0 38.0 31.0 38.0 28-29 35.395887773346175 38.0 36.0 38.0 31.0 38.0 30-31 35.42759822124421 38.0 36.0 38.0 31.0 38.0 32-33 35.366024847567964 38.0 36.0 38.0 31.0 38.0 34-35 35.36697382294962 38.0 36.0 38.0 31.0 38.0 36-37 35.307940219135375 38.0 36.0 38.0 30.5 38.0 38-39 35.22455874936964 38.0 36.0 38.0 29.0 38.0 40-41 35.26552972997754 38.0 36.0 38.0 30.0 38.0 42-43 35.28979049190849 38.0 36.0 38.0 30.5 38.0 44-45 35.22671801219457 38.0 36.0 38.0 29.0 38.0 46-47 35.263815156099575 38.0 36.0 38.0 29.5 38.0 48-49 35.255444001283635 38.0 36.0 38.0 30.0 38.0 50-51 35.127254389584195 37.5 35.0 38.0 27.0 38.0 52-53 35.16326502544354 37.5 35.0 38.0 27.0 38.0 54-55 35.18973547884289 38.0 35.0 38.0 27.5 38.0 56-57 35.14690780727089 37.0 35.0 38.0 27.0 38.0 58-59 35.11167652317425 37.0 35.0 38.0 27.0 38.0 60-61 35.11331774629808 37.0 35.0 38.0 27.0 38.0 62-63 35.08516480997571 37.0 35.0 38.0 27.0 38.0 64-65 35.00559299500298 37.0 35.0 38.0 27.0 38.0 66-67 34.99007472608078 37.0 35.0 38.0 27.0 38.0 68-69 34.887599138128635 37.0 35.0 38.0 27.0 38.0 70-71 34.823229266950904 37.0 35.0 38.0 27.0 38.0 72-73 34.78709943611608 37.0 35.0 38.0 27.0 38.0 74-75 34.782006143125656 37.0 35.0 38.0 27.0 38.0 76 33.711823224682526 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 0.0 20 3.0 21 10.0 22 31.0 23 79.0 24 179.0 25 298.0 26 556.0 27 1009.0 28 1603.0 29 2337.0 30 3334.0 31 4752.0 32 6394.0 33 8536.0 34 10871.0 35 13818.0 36 19634.0 37 35620.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.36102324302021 19.12712602576445 9.583276028056662 25.92857470315867 2 24.09113831201577 21.211204327694492 30.674368495851095 24.023288864438637 3 20.74451015449503 22.7946637326365 29.161509191766378 27.299316921102097 4 14.987392839132626 18.21115848347316 36.54976390226012 30.2516847751341 5 14.620639068445424 34.56562600284234 35.48892862054738 15.324806308164856 6 30.824737541832853 38.04245174895705 17.391463805987257 13.741346903222848 7 29.488836932104707 29.57043964608261 21.022326135790586 19.918397286022095 8 26.03309952780452 35.050657864576166 18.98867647733003 19.927566130289275 9 25.28125429789575 16.136249025810294 20.52079035437583 38.06170632191812 10-11 25.9304084720121 25.04103057809563 27.28235455920781 21.746206390684456 12-13 25.928116260945306 22.772658506395267 26.138999679090453 25.16022555356897 14-15 24.102599367349743 23.72805207903544 23.23155916196763 28.937789391647183 16-17 24.743960023838994 27.11227249805162 24.688946958235913 23.454820519873472 18-19 24.594507862283958 26.035850181084676 25.554485857057717 23.81515609957365 20-21 23.32003850914592 26.421400082519597 25.60812359602072 24.650437812313758 22-23 23.943978361527527 26.53692752028607 25.827717416219688 23.691376701966718 24-25 24.51657268601293 26.584605510475406 25.76032641085591 23.138495392655756 26-27 23.80552881309311 27.00728923119241 26.04776967863201 23.139412277082474 28-29 23.793150873332415 26.515839178471555 26.668958877733463 23.022051070462567 30-31 24.45605831384954 26.61898867647733 26.07252555815339 22.852427451519734 32-33 23.259982579195892 26.588731490395634 25.87264475312887 24.278641177279603 34-35 24.871406959152797 26.4470728464677 26.04180992985834 22.639710264521156 36-37 24.431302434328153 26.100032090954933 25.583826158712696 23.884839316004218 38-39 23.30170082061156 26.436528675560446 26.86654747169119 23.3952230321368 40-41 23.558428460092607 25.293632237656443 27.461147022417826 23.686792279833128 42-43 24.065923990281025 25.26795947370834 27.144363452986752 23.521753083023885 44-45 22.848759913812863 26.4929170678036 27.35249621785174 23.305826800531793 46-47 24.013661577958096 24.84252509971118 26.885343602438912 24.258469719891806 48-49 23.634071425296842 24.689405400449274 27.366707926465867 24.309815247788016 50-51 22.918901572456793 24.54316233438775 27.919130793563475 24.618805299591987 52-53 22.323843579516804 24.500527208545364 29.062485673680833 24.113143538257003 54-55 21.518819052858387 25.113006005592997 28.70856828496768 24.659606656580937 56-57 22.04373538715445 24.80722504928254 27.91500481364324 25.234034749919772 58-59 21.472516389309128 24.881492687846695 28.787420345665428 24.858570577178746 60-61 21.84935588869023 25.45637922339889 27.513867876954112 25.180397010956767 62-63 20.468527942052905 26.197680282400405 27.6481914454683 25.685600330078394 64-65 20.804566084445057 26.530050887085682 26.876174758171732 25.789208270297532 66-67 20.919635079998166 26.21143354880117 26.477788474762754 26.391142896437902 68-69 20.893045431623346 26.737725209737313 25.955622793746848 26.413606564892493 70-71 21.048457341952048 26.442488424334115 25.80937972768533 26.699674506028515 72-73 21.408334479438867 25.416036308623298 25.6094989226608 27.566130289277034 74-75 21.314353825700273 25.711731536239856 25.403199926649243 27.570714711410627 76 21.76225186815202 25.350937514326322 24.90258102966121 27.984229587860447 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.5 14 2.0 15 4.0 16 7.5 17 8.0 18 14.0 19 31.0 20 46.5 21 51.0 22 68.0 23 129.0 24 216.5 25 260.0 26 316.0 27 422.0 28 541.0 29 610.0 30 742.5 31 1000.5 32 1453.0 33 1780.0 34 1984.5 35 2455.5 36 3052.0 37 3382.0 38 3722.5 39 4637.5 40 5559.0 41 6210.5 42 6515.0 43 6841.5 44 7354.0 45 7357.0 46 7174.0 47 7024.5 48 6422.5 49 5620.5 50 5271.0 51 4901.5 52 4039.0 53 3361.5 54 3177.0 55 2860.5 56 2314.0 57 1871.5 58 1659.0 59 1475.5 60 1226.5 61 1103.5 62 1046.0 63 1013.0 64 987.0 65 989.5 66 986.5 67 988.0 68 1000.5 69 983.0 70 973.5 71 994.0 72 977.0 73 890.0 74 827.0 75 834.0 76 763.5 77 616.0 78 492.0 79 445.0 80 383.0 81 265.5 82 186.5 83 163.0 84 132.0 85 87.5 86 57.0 87 40.0 88 32.5 89 17.0 90 7.0 91 3.5 92 2.0 93 3.0 94 2.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 109065.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.34671984596341 #Duplication Level Percentage of deduplicated Percentage of total 1 68.94277220364177 34.020996653371846 2 15.0297287253809 14.833356255444002 3 5.67075436640654 8.39499381103012 4 2.5789669267930138 5.0905423371384035 5 1.7521367521367521 4.323110071975427 6 1.2337421033073206 3.6528675560445603 7 0.9104422147900408 3.144913583642782 8 0.7227796358231141 2.853344335946454 9 0.6354515050167224 2.8221702654380416 >10 2.5046451133407652 19.320588639801954 >50 0.016722408026755852 0.5648008068582955 >100 0.0 0.0 >500 0.0 0.0 >1k 0.001858045336306206 0.978315683308119 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT 1067 0.978315683308119 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 9.168844267180122E-4 0.0 5 0.0 0.0 0.0 9.168844267180122E-4 0.0 6 0.0 0.0 0.0 9.168844267180122E-4 0.0 7 0.0 0.0 0.0 0.0018337688534360245 0.0 8 0.0 0.0 0.0 0.0018337688534360245 0.0 9 0.0 0.0 0.0 0.0018337688534360245 0.0 10 0.0 0.0 0.0 0.0018337688534360245 0.0 11 0.0 0.0 0.0 0.0018337688534360245 0.0 12 0.0 0.0 0.0 0.0018337688534360245 0.0 13 0.0 0.0 0.0 0.0018337688534360245 0.0 14 0.0 0.0 0.0 0.0018337688534360245 0.0 15 0.0 0.0 0.0 0.0018337688534360245 0.0 16 0.0 0.0 0.0 0.0018337688534360245 0.0 17 0.0 0.0 0.0 0.0027506532801540367 0.0 18 0.0 0.0 0.0 0.0027506532801540367 0.0 19 0.0 0.0 0.0 0.003667537706872049 0.0 20 0.0 0.0 0.0 0.004584422133590061 0.0 21 0.0 0.0 0.0 0.00825195984046211 0.0 22 0.0 0.0 0.0 0.00825195984046211 0.0 23 0.0 0.0 0.0 0.00825195984046211 0.0 24 0.0 0.0 0.0 0.00825195984046211 0.0 25 0.0 0.0 0.0 0.00825195984046211 0.0 26 0.0 0.0 0.0 0.00825195984046211 0.0 27 0.0 0.0 0.0 0.012836381974052171 0.0 28 0.0 0.0 0.0 0.026589648374822354 0.0 29 0.0 0.0 0.0 0.03667537706872049 0.0 30 0.0 0.0 0.0 0.051345527896208686 0.0 31 0.0 0.0 0.0 0.06234814101682483 0.0 32 0.0 0.0 0.0 0.08527025168477513 0.0 33 0.0 0.0 0.0 0.10452482464585339 0.0 34 0.0 0.0 0.0 0.149452161555036 0.0 35 0.0 0.0 0.0 0.2044652271581167 0.0 36 0.0 0.0 0.0 0.33557970017879246 0.0 37 0.0 0.0 0.0 0.5042864346949067 0.0 38 0.0 0.0 0.0 0.7307568880942558 0.0 39 0.0 0.0 0.0 0.9865676431485811 0.0 40 0.0 0.0 0.0 1.2726355842846009 0.0 41 0.0 0.0 0.0 1.6036308623298032 0.0 42 0.0 0.0 0.0 1.9768028240040343 0.0 43 0.0 0.0 0.0 2.5012607160867373 0.0 44 0.0 0.0 0.0 3.0596433319580068 0.0 45 0.0 0.0 0.0 3.753724842983542 0.0 46 0.0 0.0 0.0 4.560583138495392 0.0 47 0.0 0.0 0.0 5.346353092192729 0.0 48 0.0 0.0 0.0 6.069774904873241 0.0 49 0.0 0.0 0.0 6.848209783156833 0.0 50 0.0 0.0 0.0 7.5285380277815985 0.0 51 0.0 0.0 0.0 8.240957227341493 0.0 52 0.0 0.0 0.0 8.932288085086874 0.0 53 0.0 0.0 0.0 9.635538440379591 0.0 54 0.0 0.0 0.0 10.356209599779948 0.0 55 0.0 0.0 0.0 11.141062669050566 0.0 56 0.0 0.0 0.0 11.90941181864026 0.0 57 0.0 0.0 0.0 12.715353229725393 0.0 58 0.0 0.0 0.0 13.470865997341035 0.0 59 0.0 0.0 0.0 14.205290423142163 0.0 60 0.0 0.0 0.0 14.973639572731857 0.0 61 0.0 0.0 0.0 15.694310732132214 0.0 62 0.0 0.0 0.0 16.471828725989088 0.0 63 0.0 0.0 0.0 17.120066015678724 0.0 64 0.0 0.0 0.0 17.8315683308119 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATCGTT 15 0.0022194935 70.0 32 TGTAGGT 15 0.0022194935 70.0 17 ATCGCAA 15 0.0022194935 70.0 30 CAAAGGC 15 0.0022194935 70.0 14 GTGTTCA 20 0.00693526 52.5 11 GCCTTAC 20 0.00693526 52.5 69 CTCGTAT 120 0.0 52.5 39 GTGGATC 20 0.00693526 52.5 20 CCCAACG 20 0.00693526 52.5 21 CTCGCTA 20 0.00693526 52.5 57 TCGTATG 120 0.0 52.5 40 CTCGCCT 20 0.00693526 52.5 66 GAGTTGA 20 0.00693526 52.5 30 CGCAAAG 20 0.00693526 52.5 12 TGACTCG 20 0.00693526 52.5 28 TCTCGTA 105 0.0 49.999996 38 CGTATGC 120 0.0 49.583332 41 TATGCCG 120 0.0 49.583332 43 CCGTCTT 115 0.0 48.695656 47 ATCTCGT 110 0.0 47.727276 37 >>END_MODULE