##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781192_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 153497 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.25324273438569 34.0 34.0 34.0 27.0 34.0 2 32.396131520485746 34.0 34.0 34.0 31.0 34.0 3 32.42374118060939 34.0 34.0 34.0 31.0 34.0 4 32.48574890714477 34.0 34.0 34.0 31.0 34.0 5 32.56273412509691 34.0 34.0 34.0 31.0 34.0 6 35.800628025303425 38.0 37.0 38.0 31.0 38.0 7 35.71718014032847 38.0 37.0 38.0 31.0 38.0 8 35.54302038476322 38.0 37.0 38.0 31.0 38.0 9 35.80824380932526 38.0 37.0 38.0 31.0 38.0 10-11 35.70867183071982 38.0 37.0 38.0 31.0 38.0 12-13 35.64605822915106 38.0 37.0 38.0 31.0 38.0 14-15 35.60824315784673 38.0 37.0 38.0 31.0 38.0 16-17 35.59830159547092 38.0 37.0 38.0 31.0 38.0 18-19 35.6255105962983 38.0 37.0 38.0 31.0 38.0 20-21 35.57931751109142 38.0 37.0 38.0 31.0 38.0 22-23 35.612217176882936 38.0 37.0 38.0 31.0 38.0 24-25 35.62846505143423 38.0 37.0 38.0 31.0 38.0 26-27 35.57441187775657 38.0 37.0 38.0 31.0 38.0 28-29 35.667097728294365 38.0 37.0 38.0 31.0 38.0 30-31 35.725541867267765 38.0 37.0 38.0 31.0 38.0 32-33 35.683000319224476 38.0 37.0 38.0 31.0 38.0 34-35 35.71465566102269 38.0 37.0 38.0 31.0 38.0 36-37 35.63370293881965 38.0 37.0 38.0 31.0 38.0 38-39 35.624451943686196 38.0 37.0 38.0 31.0 38.0 40-41 35.60481963816882 38.0 37.0 38.0 31.0 38.0 42-43 35.68594500218245 38.0 37.0 38.0 31.0 38.0 44-45 35.67180791807006 38.0 37.0 38.0 31.0 38.0 46-47 35.652318937829406 38.0 37.0 38.0 31.0 38.0 48-49 35.62099585008176 38.0 37.0 38.0 31.0 38.0 50-51 35.54245685583432 38.0 37.0 38.0 31.0 38.0 52-53 35.60074138256774 38.0 37.0 38.0 31.0 38.0 54-55 35.54720613432184 38.0 37.0 38.0 31.0 38.0 56-57 35.51349863515247 38.0 37.0 38.0 31.0 38.0 58-59 35.51374293960143 38.0 37.0 38.0 31.0 38.0 60-61 35.51646286246637 38.0 37.0 38.0 31.0 38.0 62-63 35.47818849879802 38.0 37.0 38.0 31.0 38.0 64-65 35.49077832140042 38.0 37.0 38.0 31.0 38.0 66-67 35.39482530603204 38.0 36.0 38.0 31.0 38.0 68-69 35.13839358423943 38.0 36.0 38.0 27.0 38.0 70-71 35.333055369160306 38.0 36.0 38.0 29.5 38.0 72-73 35.344218453780854 38.0 36.0 38.0 30.0 38.0 74-75 35.35311439311518 38.0 36.0 38.0 30.5 38.0 76 34.2195091760751 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 19.0 14 43.0 15 162.0 16 275.0 17 427.0 18 536.0 19 578.0 20 579.0 21 581.0 22 631.0 23 760.0 24 855.0 25 1141.0 26 1246.0 27 1459.0 28 1778.0 29 2238.0 30 2848.0 31 3494.0 32 4592.0 33 6302.0 34 8740.0 35 13439.0 36 25578.0 37 75196.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.0940604702372 19.24011544199561 9.437969471716059 25.227854616051125 2 22.50532583698704 20.683791865639066 32.21235594180994 24.59852635556395 3 18.96519150211405 22.0955458412868 30.74913516225073 28.19012749434842 4 13.146836745995035 17.00554408229477 37.328416842022975 32.519202329687225 5 13.211333120517013 33.71531691173117 36.705603366841046 16.367746600910767 6 28.855287074014473 37.98054685107852 18.9821299439077 14.182036130999304 7 28.375147397017532 29.994723023902747 22.499462530212316 19.130667048867405 8 24.74120015374893 35.46388528766035 20.361961471559706 19.432953087031017 9 24.0167560278051 17.14300605223555 21.89293601829352 36.94730190166583 10-11 24.26659804426145 25.20733304233959 28.270910832133527 22.25515808126543 12-13 24.34021511821078 23.43140256812837 27.969276272500437 24.259106041160415 14-15 22.38187065545255 24.67572656143117 25.004397480081042 27.93800530303524 16-17 22.25841547391806 28.16243965680111 26.14057603731669 23.438568831964144 18-19 21.732346560519098 27.747773572121933 27.574480283002273 22.9453995843567 20-21 22.041147383987962 27.924649993159473 27.238317361251358 22.795885261601203 22-23 21.873717401643027 27.309002781813323 27.773832713342934 23.043447103200716 24-25 21.972742138282833 27.58979002846961 27.337993576421688 23.099474256825868 26-27 21.36588988709877 27.853638833332244 27.83376873815123 22.94670254141775 28-29 21.80922102712105 27.45232805852883 28.428568636520584 22.309882277829534 30-31 22.080887574349987 27.73669843710301 27.674156498172604 22.508257490374405 32-33 21.51605568838479 27.782953412770283 27.72855495547144 22.972435943373487 34-35 22.041473123253223 26.990104041121327 28.149084346925346 22.819338488700105 36-37 22.010202153788022 27.29206434001967 27.665361538010515 23.03237196818179 38-39 21.53006247679108 27.823996560193358 28.15853078561796 22.487410177397603 40-41 21.64700287302032 27.222030397988235 28.41000149840062 22.720965230590824 42-43 21.555795878746817 27.420731349798366 27.881978149410084 23.141494622044732 44-45 21.446673224883874 27.251998410392385 28.048105174693966 23.25322319002977 46-47 21.51475273132374 26.975120034919247 28.36504947979439 23.145077753962617 48-49 20.87597803214395 27.23571144712926 28.808380619816674 23.079929900910116 50-51 21.144712925985523 27.040919366502276 28.73183189247998 23.082535815032216 52-53 21.106275692684548 27.00378509026235 28.808380619816674 23.08155859723643 54-55 20.665550466784367 27.177078379382007 28.81554688365245 23.341824270181178 56-57 20.587373043121364 27.176101161586217 28.822061668957698 23.414464126334718 58-59 20.5375349355362 27.03342736340124 28.787859046105137 23.641178654957425 60-61 20.624833058626553 26.956227157534023 28.889163957601777 23.529775826237646 62-63 20.3098431891177 26.9868466484687 28.957243464041643 23.746066698371955 64-65 20.701707525228503 27.00378509026235 28.57971165560239 23.714795728906754 66-67 20.603008527853962 26.905737571418335 28.251366476217775 24.239887424509927 68-69 20.255770471084126 26.99629308716131 28.38687401056698 24.36106243118758 70-71 21.235594180993765 26.74221646025655 28.019114380085604 24.003074978664078 72-73 21.16881763161495 26.48944279041284 27.78653654468817 24.555203033284037 74-75 21.376313543587173 26.38976657524251 27.625295608383226 24.60862427278709 76 21.98153709844492 26.133409773480913 27.317797741975415 24.56725538609875 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 2.0 12 4.0 13 4.5 14 8.5 15 18.0 16 43.0 17 62.0 18 83.0 19 139.0 20 260.5 21 347.0 22 408.5 23 601.5 24 860.5 25 988.0 26 1122.5 27 1398.5 28 1761.5 29 1983.0 30 2300.5 31 2783.5 32 3392.5 33 3836.0 34 4095.5 35 4753.0 36 5648.0 37 6145.0 38 6606.5 39 7521.5 40 8305.0 41 8787.5 42 8940.0 43 9031.0 44 9091.0 45 8925.0 46 8790.0 47 8460.0 48 7570.0 49 6848.5 50 6687.0 51 6252.5 52 5225.0 53 4334.5 54 4037.0 55 3787.0 56 3271.5 57 2727.5 58 2449.0 59 2206.5 60 1786.5 61 1492.5 62 1376.0 63 1293.5 64 1150.5 65 1042.0 66 996.0 67 998.0 68 947.0 69 848.5 70 816.0 71 831.0 72 776.0 73 714.5 74 645.0 75 582.0 76 535.0 77 462.0 78 394.5 79 353.0 80 310.5 81 223.5 82 151.0 83 123.0 84 96.0 85 68.5 86 50.5 87 33.0 88 24.0 89 15.0 90 10.5 91 4.5 92 3.0 93 4.0 94 2.5 95 0.0 96 0.0 97 0.0 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 153497.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.1836452829697 #Duplication Level Percentage of deduplicated Percentage of total 1 77.00984688353869 48.65762848785318 2 13.780481517760478 17.41402112093396 3 3.8500799092643194 7.297862498941347 4 1.5486930968706503 3.914083011394359 5 0.8692065783368561 2.745982006162987 6 0.6062793215445688 2.2984162556922936 7 0.44439861834304273 1.9655107265940048 8 0.36294272310151054 1.8345635419584747 9 0.2691137804815178 1.5303230682032873 >10 1.251739959787596 12.04844394352984 >50 0.007217610970768675 0.29316533873626194 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 6.514785305250265E-4 0.0 6 0.0 0.0 0.0 6.514785305250265E-4 0.0 7 0.0 0.0 0.0 6.514785305250265E-4 0.0 8 0.0 0.0 0.0 6.514785305250265E-4 0.0 9 0.0 0.0 0.0 0.0019544355915750797 0.0 10 0.0 0.0 0.0 0.0019544355915750797 0.0 11 0.0 0.0 0.0 0.0019544355915750797 0.0 12 0.0 0.0 0.0 0.0019544355915750797 0.0 13 0.0 0.0 0.0 0.0019544355915750797 0.0 14 0.0 0.0 0.0 0.0019544355915750797 0.0 15 0.0 0.0 0.0 0.002605914122100106 0.0 16 0.0 0.0 0.0 0.002605914122100106 0.0 17 0.0 0.0 0.0 0.0032573926526251328 0.0 18 0.0 0.0 0.0 0.0032573926526251328 0.0 19 0.0 0.0 0.0 0.0032573926526251328 0.0 20 0.0 0.0 0.0 0.0032573926526251328 0.0 21 0.0 0.0 0.0 0.0032573926526251328 0.0 22 0.0 0.0 0.0 0.004560349713675186 0.0 23 0.0 0.0 0.0 0.005211828244200212 0.0 24 0.0 0.0 0.0 0.005863306774725239 0.0 25 0.0 0.0 0.0 0.0065147853052502655 0.0 26 0.0 0.0 0.0 0.0065147853052502655 0.0 27 0.0 0.0 0.0 0.009772177957875399 0.0 28 0.0 0.0 0.0 0.012378092079975504 0.0 29 0.0 0.0 0.0 0.02280174856837593 0.0 30 0.0 0.0 0.0 0.027362098282051116 0.0 31 0.0 0.0 0.0 0.03387688358730138 0.0 32 0.0 0.0 0.0 0.04560349713675186 0.0 33 0.0 0.0 0.0 0.06254193893040255 0.0 34 0.0 0.0 0.0 0.08860108015140361 0.0 35 0.0 0.0 0.0 0.13420457728815546 0.0 36 0.0 0.0 0.0 0.19674651621855802 0.0 37 0.0 0.0 0.0 0.3029375166941373 0.0 38 0.0 0.0 0.0 0.41564330247496695 0.0 39 0.0 0.0 0.0 0.5739525853925483 0.0 40 0.0 0.0 0.0 0.7452914389206303 0.0 41 0.0 0.0 0.0 0.9635367466465142 0.0 42 0.0 0.0 0.0 1.225431115917575 0.0 43 0.0 0.0 0.0 1.5185964546538369 0.0 44 0.0 0.0 0.0 1.891893652644677 6.514785305250265E-4 45 0.0 0.0 0.0 2.308839912180694 6.514785305250265E-4 46 0.0 0.0 0.0 2.7388157423272115 6.514785305250265E-4 47 0.0 0.0 0.0 3.215046548141006 6.514785305250265E-4 48 0.0 0.0 0.0 3.639810550043323 6.514785305250265E-4 49 0.0 0.0 0.0 4.055453852518291 6.514785305250265E-4 50 0.0 0.0 0.0 4.468491240871157 6.514785305250265E-4 51 0.0 0.0 0.0 4.9043303777924 6.514785305250265E-4 52 0.0 0.0 0.0 5.319973680267367 6.514785305250265E-4 53 0.0 0.0 0.0 5.744737682169684 6.514785305250265E-4 54 0.0 0.0 0.0 6.206635960311928 6.514785305250265E-4 55 0.0 0.0 0.0 6.688730072900448 6.514785305250265E-4 56 0.0 0.0 0.0 7.164960878714242 6.514785305250265E-4 57 0.0 0.0 0.0 7.62099585008176 6.514785305250265E-4 58 0.0 0.0 0.0 8.077682299979804 6.514785305250265E-4 59 0.0 0.0 0.0 8.514172915431573 6.514785305250265E-4 60 0.0 0.0 0.0 8.952617966474914 6.514785305250265E-4 61 0.0 0.0 0.0 9.397577802823507 6.514785305250265E-4 62 0.0 0.0 0.0 9.836674332397376 6.514785305250265E-4 63 0.0 0.0 0.0 10.28814895405122 6.514785305250265E-4 64 0.0 0.0 0.0 10.703792256526187 6.514785305250265E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCAG 20 0.006940621 52.5 8 TATGTCG 20 0.006940621 52.5 5 GTATAGG 70 1.909575E-8 40.000004 1 ACTAGCC 40 0.0024129285 35.0 32 GGGGCCC 40 0.0024129285 35.0 11 TATAGGA 55 2.981468E-4 31.81818 2 AGGGTTA 45 0.004296948 31.111113 5 GGTAGGG 45 0.004296948 31.111113 36 GTACATG 50 0.007191219 27.999998 1 GCATTAC 50 0.007191219 27.999998 43 GTGTACA 50 0.007191219 27.999998 1 GCCTACA 65 7.927778E-4 26.923077 2 CTACACT 70 0.0012217159 25.000002 4 GTCCCAA 75 0.0018258359 23.333334 51 TATACTG 75 0.0018258359 23.333334 5 CCCATAC 80 0.0026567313 21.875 3 GCTTCTA 115 4.0896783E-5 21.30435 1 ACTGCAT 85 0.0037760364 20.588234 8 GGTGTAG 85 0.0037760364 20.588234 1 TATTGAC 85 0.0037760364 20.588234 28 >>END_MODULE