##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781191_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 80065 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.165428089677135 34.0 34.0 34.0 27.0 34.0 2 32.4205333166802 34.0 34.0 34.0 31.0 34.0 3 32.388534315868355 34.0 34.0 34.0 31.0 34.0 4 32.51816648972709 34.0 34.0 34.0 31.0 34.0 5 32.52632236308 34.0 34.0 34.0 31.0 34.0 6 35.7049896958721 38.0 37.0 38.0 31.0 38.0 7 35.731455692250044 38.0 37.0 38.0 31.0 38.0 8 35.54067320302254 38.0 37.0 38.0 31.0 38.0 9 35.705651658027854 38.0 37.0 38.0 31.0 38.0 10-11 35.62120776868794 38.0 37.0 38.0 31.0 38.0 12-13 35.628089677137325 38.0 37.0 38.0 31.0 38.0 14-15 35.58936489102604 38.0 37.0 38.0 31.0 38.0 16-17 35.57475800911759 38.0 37.0 38.0 31.0 38.0 18-19 35.594723037532006 38.0 37.0 38.0 31.0 38.0 20-21 35.55129582214451 38.0 37.0 38.0 31.0 38.0 22-23 35.58771623056266 38.0 37.0 38.0 31.0 38.0 24-25 35.59527259101979 38.0 37.0 38.0 31.0 38.0 26-27 35.505582963841874 38.0 37.0 38.0 31.0 38.0 28-29 35.610016861300196 38.0 37.0 38.0 31.0 38.0 30-31 35.68261412602261 38.0 37.0 38.0 31.0 38.0 32-33 35.62634109785799 38.0 37.0 38.0 31.0 38.0 34-35 35.641641166552176 38.0 37.0 38.0 31.0 38.0 36-37 35.55858989570973 38.0 37.0 38.0 31.0 38.0 38-39 35.54725535502404 38.0 37.0 38.0 31.0 38.0 40-41 35.50832448635484 38.0 37.0 38.0 31.0 38.0 42-43 35.61837257228502 38.0 37.0 38.0 31.0 38.0 44-45 35.605570473989886 38.0 37.0 38.0 31.0 38.0 46-47 35.59620932991944 38.0 37.0 38.0 31.0 38.0 48-49 35.572528570536434 38.0 37.0 38.0 31.0 38.0 50-51 35.50688190844939 38.0 37.0 38.0 31.0 38.0 52-53 35.53636420408418 38.0 37.0 38.0 31.0 38.0 54-55 35.50878036595266 38.0 37.0 38.0 31.0 38.0 56-57 35.457322175732216 38.0 37.0 38.0 31.0 38.0 58-59 35.45148316992444 38.0 37.0 38.0 31.0 38.0 60-61 35.45892087678761 38.0 37.0 38.0 31.0 38.0 62-63 35.4186723287329 38.0 37.0 38.0 31.0 38.0 64-65 35.42507962280647 38.0 37.0 38.0 31.0 38.0 66-67 35.36750765003434 38.0 36.0 38.0 30.0 38.0 68-69 35.088034721788546 38.0 36.0 38.0 27.0 38.0 70-71 35.277312183850626 38.0 36.0 38.0 27.5 38.0 72-73 35.2773621432586 38.0 36.0 38.0 27.5 38.0 74-75 35.319677761818525 38.0 36.0 38.0 29.5 38.0 76 34.19517891712983 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 21.0 14 54.0 15 134.0 16 280.0 17 389.0 18 460.0 19 408.0 20 375.0 21 332.0 22 345.0 23 346.0 24 435.0 25 476.0 26 603.0 27 691.0 28 829.0 29 1045.0 30 1350.0 31 1651.0 32 2215.0 33 2991.0 34 4287.0 35 6783.0 36 12761.0 37 40802.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.156248048460625 18.423780678198966 9.417348404421407 26.002622868919 2 22.920127396490354 20.28976456628989 31.88034721788547 24.909760819334288 3 19.370511459439204 22.183226128770375 29.677137325922686 28.76912508586773 4 13.538999562855182 16.703928058452508 37.05114594392057 32.70592643477175 5 13.223006307375258 33.81502529195029 36.452882033347905 16.509086367326546 6 29.237494535689752 38.00162368075938 18.483731967776183 14.277149815774685 7 28.259539124461377 29.679635296321738 22.438019109473554 19.622806469743335 8 25.254480734403295 35.40123649534753 19.8326359832636 19.511646786985573 9 24.516330481483795 16.025729095110222 20.92799600324736 38.52994442015862 10-11 24.47573846249922 24.616249297445826 28.2239430462749 22.684069193780054 12-13 24.6468494348342 22.953225504277775 27.052394929120087 25.347530131767936 14-15 22.704677449572223 24.197839255604823 24.39955036532817 28.697932929494783 16-17 23.151814151002313 27.500780615749704 25.1907824892275 24.156622744020485 18-19 22.670954849185037 27.224754886654594 26.51033535252607 23.593954911634295 20-21 22.531068506838196 26.99431711734216 26.68519328045963 23.78942109536002 22-23 22.82957596952476 26.580903016299256 26.84256541559982 23.746955598576157 24-25 22.578529944420158 26.96434147255355 26.549678386311122 23.907450196715168 26-27 21.826640854305875 27.046150003122467 27.11297071129707 24.01423843127459 28-29 22.319990008118403 26.681446324861053 27.85861487541373 23.13994879160682 30-31 22.558546181227754 26.880659464185346 26.98494972834572 23.575844626241178 32-33 22.105164553800037 27.11297071129707 27.02054580653219 23.7613189283707 34-35 22.71092237556985 26.55904577530756 27.088615499906325 23.641416349216264 36-37 23.03503403484669 26.384187847374008 26.80696933741335 23.77380878036595 38-39 22.126397302191968 27.30219196902517 27.426465996377942 23.14494473240492 40-41 22.265034659339285 26.19496658964591 27.821145319427963 23.718853431586837 42-43 22.35371260850559 26.442265659151936 27.498907137950418 23.705114594392057 44-45 21.881596203084992 26.31924061699869 27.68063448448136 24.11852869543496 46-47 22.058327608817834 26.501592456129398 27.463935552363704 23.976144382689064 48-49 21.647411478173982 26.19496658964591 28.07094235933304 24.08667957284706 50-51 21.605570473989882 26.51907824892275 27.69936926247424 24.175982014613126 52-53 21.580590769999375 26.327983513395363 28.13339161930931 23.958034097295947 54-55 21.36139386748267 26.590894897895463 28.131518141510025 23.916193093111847 56-57 21.346406045088365 26.432898270155498 27.916692687191656 24.304002997564478 58-59 21.340161119090737 26.43726971835384 28.016611503153687 24.205957659401736 60-61 21.06663336039468 26.096921251483167 28.08905264472616 24.74739274339599 62-63 20.620745644164117 26.254293386623367 28.24829825766565 24.876662711546867 64-65 21.372010241678634 26.13813776306751 28.013489040154877 24.47636295509898 66-67 21.047274089802038 25.955161431337036 27.986635858365077 25.010928620495847 68-69 20.930493973646414 26.073815025291953 27.778679822644104 25.217011178417536 70-71 21.619933803784424 26.05320676949978 27.50452757134828 24.822331855367512 72-73 21.805408105913944 25.89645912695935 27.097982888902767 25.200149878223943 74-75 21.90033098107787 25.71660525822769 27.040529569724598 25.342534190969836 76 22.477986635858365 25.286954349590957 26.991819146943108 25.24323986760757 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.5 10 1.0 11 1.5 12 2.0 13 2.0 14 2.5 15 7.0 16 17.0 17 23.0 18 40.5 19 67.5 20 107.5 21 138.0 22 146.0 23 206.5 24 319.5 25 380.0 26 432.0 27 584.0 28 786.0 29 888.0 30 983.0 31 1156.5 32 1495.5 33 1756.0 34 1865.5 35 2235.0 36 2735.5 37 2976.0 38 3129.0 39 3599.5 40 4126.5 41 4545.5 42 4755.0 43 4735.0 44 4713.5 45 4696.5 46 4681.0 47 4564.0 48 4191.5 49 3745.5 50 3555.0 51 3299.5 52 2769.5 53 2332.5 54 2170.0 55 1996.0 56 1733.5 57 1458.0 58 1271.0 59 1145.5 60 943.5 61 809.5 62 752.0 63 722.5 64 671.5 65 649.5 66 642.5 67 636.0 68 674.5 69 682.5 70 641.5 71 631.0 72 599.0 73 574.5 74 537.5 75 493.0 76 448.5 77 399.5 78 327.5 79 260.0 80 232.0 81 169.0 82 131.5 83 129.0 84 99.0 85 55.5 86 35.0 87 28.0 88 22.0 89 11.0 90 4.5 91 1.5 92 0.0 93 0.0 94 1.0 95 1.0 96 0.0 97 0.0 98 0.5 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 80065.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.81352650971086 #Duplication Level Percentage of deduplicated Percentage of total 1 74.1326705865713 45.824017985386874 2 14.814814814814813 18.315118965840256 3 4.77056434503243 8.846562168238306 4 2.004404841284274 4.95597327171673 5 1.1739508193408903 3.628302004621245 6 0.7900426340142652 2.9301192780865546 7 0.5677800004041139 2.456753887466433 8 0.4121961568770079 2.0383438456254295 9 0.29096199308965265 1.6186848185848997 >10 1.0405932391747994 9.32242552925748 >50 0.0020205693964559213 0.06369824517579467 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002497970399050771 0.0 2 0.0 0.0 0.0 0.002497970399050771 0.0 3 0.0 0.0 0.0 0.002497970399050771 0.0 4 0.0 0.0 0.0 0.0037469555985761567 0.0 5 0.0 0.0 0.0 0.0037469555985761567 0.0 6 0.0 0.0 0.0 0.0037469555985761567 0.0 7 0.0 0.0 0.0 0.0037469555985761567 0.0 8 0.0 0.0 0.0 0.0037469555985761567 0.0 9 0.0 0.0 0.0 0.0037469555985761567 0.0 10 0.0 0.0 0.0 0.0037469555985761567 0.0 11 0.0 0.0 0.0 0.0037469555985761567 0.0 12 0.0 0.0 0.0 0.0037469555985761567 0.0 13 0.0 0.0 0.0 0.0037469555985761567 0.0 14 0.0 0.0 0.0 0.0037469555985761567 0.0 15 0.0 0.0 0.0 0.0037469555985761567 0.0 16 0.0 0.0 0.0 0.0037469555985761567 0.0 17 0.0 0.0 0.0 0.0037469555985761567 0.0 18 0.0 0.0 0.0 0.004995940798101542 0.0 19 0.0 0.0 0.0 0.004995940798101542 0.0 20 0.0 0.0 0.0 0.004995940798101542 0.0 21 0.0 0.0 0.0 0.006244925997626928 0.0 22 0.0 0.0 0.0 0.007493911197152313 0.0 23 0.0 0.0 0.0 0.007493911197152313 0.0 24 0.0 0.0 0.0 0.011240866795728471 0.0 25 0.0 0.0 0.0 0.012489851995253856 0.0 26 0.0 0.0 0.0 0.012489851995253856 0.0 27 0.0 0.0 0.0 0.0174857927933554 0.0 28 0.0 0.0 0.0 0.022481733591456943 0.0 29 0.0 0.0 0.0 0.026228689190033096 0.0 30 0.0 0.0 0.0 0.03746955598576157 0.0 31 0.0 0.0 0.0 0.04621245238243927 0.0 32 0.0 0.0 0.0 0.06369824517579467 0.0 33 0.0 0.0 0.0 0.08243302316867546 0.0 34 0.0 0.0 0.0 0.10116780116155624 0.0 35 0.0 0.0 0.0 0.14862923874352088 0.0 36 0.0 0.0 0.0 0.2185724099169425 0.0 37 0.0 0.0 0.0 0.3297320926747018 0.0 38 0.0 0.0 0.0 0.4758633610191719 0.0 39 0.0 0.0 0.0 0.6432273777555736 0.0 40 0.0 0.0 0.0 0.8180853056891276 0.0 41 0.0 0.0 0.0 1.0141759820146132 0.0 42 0.0 0.0 0.0 1.2252544807344032 0.0 43 0.0 0.0 0.0 1.486292387435209 0.0 44 0.0 0.0 0.0 1.8360082433023168 0.0 45 0.0 0.0 0.0 2.199462936364204 0.0 46 0.0 0.0 0.0 2.5953912446137513 0.0 47 0.0 0.0 0.0 3.0325360644476365 0.0 48 0.0 0.0 0.0 3.468431899081996 0.0 49 0.0 0.0 0.0 3.85436832573534 0.0 50 0.0 0.0 0.0 4.259039530381565 0.0 51 0.0 0.0 0.0 4.662461749828265 0.0 52 0.0 0.0 0.0 5.0896146880659465 0.0 53 0.0 0.0 0.0 5.469306188721664 0.0 54 0.0 0.0 0.0 5.858989570973584 0.0 55 0.0 0.0 0.0 6.298632361206519 0.0 56 0.0 0.0 0.0 6.771997751826641 0.0 57 0.0 0.0 0.0 7.256604009242491 0.0 58 0.0 0.0 0.0 7.716230562667833 0.0 59 0.0 0.0 0.0 8.139636545306939 0.0 60 0.0 0.0 0.0 8.594267157934178 0.0 61 0.0 0.0 0.0 9.00518328857803 0.0 62 0.0 0.0 0.0 9.458564916005745 0.0 63 0.0 0.0 0.0 9.889464809842003 0.0 64 0.0 0.0 0.0 10.330356585274464 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTCCTA 15 0.0022173298 70.00001 19 GTTAATA 15 0.0022173298 70.00001 24 TTCGGTT 15 0.0022173298 70.00001 50 TGCACTG 15 0.0022173298 70.00001 5 GGGTCTA 20 0.0069285505 52.500004 1 CCGTGTA 20 0.0069285505 52.500004 34 CATAGGC 20 0.0069285505 52.500004 23 TCGGTTG 20 0.0069285505 52.500004 51 TCTGGCG 30 5.846504E-4 46.666668 62 AGCTTTG 35 0.0012487841 40.000004 35 GTATTAG 45 0.004284787 31.111113 1 GGACTGG 50 0.0071709896 28.000002 2 AGAAGTA 50 0.0071709896 28.000002 35 TGAAATT 50 0.0071709896 28.000002 23 TCCTAAA 50 0.0071709896 28.000002 2 CACCGCC 50 0.0071709896 28.000002 20 GTGTAGG 80 0.00264574 21.875002 1 CAGAGAA 80 0.00264574 21.875002 9 ACGAGGG 100 3.8897165E-4 21.000002 70 ACAGAGA 90 0.0052349395 19.444445 8 >>END_MODULE