##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781190_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 40563 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.37216182235042 34.0 34.0 34.0 31.0 34.0 2 32.55708404210734 34.0 34.0 34.0 31.0 34.0 3 32.55922885388161 34.0 34.0 34.0 31.0 34.0 4 32.605305327515225 34.0 34.0 34.0 31.0 34.0 5 32.60471365530163 34.0 34.0 34.0 31.0 34.0 6 35.89495352907822 38.0 37.0 38.0 32.0 38.0 7 35.705174666568055 38.0 37.0 38.0 31.0 38.0 8 35.65276236964721 38.0 37.0 38.0 31.0 38.0 9 35.88307077878855 38.0 37.0 38.0 32.0 38.0 10-11 35.80426743584054 38.0 37.0 38.0 31.5 38.0 12-13 35.7942952937406 38.0 37.0 38.0 31.0 38.0 14-15 35.76530335527451 38.0 37.0 38.0 31.0 38.0 16-17 35.758757981411634 38.0 37.0 38.0 31.5 38.0 18-19 35.787330818726424 38.0 37.0 38.0 31.5 38.0 20-21 35.773673051795974 38.0 37.0 38.0 31.0 38.0 22-23 35.78152503513054 38.0 37.0 38.0 31.5 38.0 24-25 35.79992850627419 38.0 37.0 38.0 31.5 38.0 26-27 35.748477676700446 38.0 37.0 38.0 31.5 38.0 28-29 35.85894780958016 38.0 37.0 38.0 32.0 38.0 30-31 35.89468234598033 38.0 37.0 38.0 32.5 38.0 32-33 35.837955772502035 38.0 37.0 38.0 32.0 38.0 34-35 35.855089613687355 38.0 37.0 38.0 32.0 38.0 36-37 35.785937923723594 38.0 37.0 38.0 31.5 38.0 38-39 35.76906293913172 38.0 37.0 38.0 31.0 38.0 40-41 35.79223676749747 38.0 37.0 38.0 31.5 38.0 42-43 35.858725932500064 38.0 37.0 38.0 32.0 38.0 44-45 35.86068584670759 38.0 37.0 38.0 32.0 38.0 46-47 35.81643369573256 38.0 37.0 38.0 32.0 38.0 48-49 35.81009787244533 38.0 37.0 38.0 32.0 38.0 50-51 35.74216650642211 38.0 37.0 38.0 31.0 38.0 52-53 35.77077632325025 38.0 37.0 38.0 31.5 38.0 54-55 35.73936838991199 38.0 37.0 38.0 31.0 38.0 56-57 35.69890047580307 38.0 37.0 38.0 31.0 38.0 58-59 35.70311614032492 38.0 37.0 38.0 31.0 38.0 60-61 35.69429036313882 38.0 37.0 38.0 31.0 38.0 62-63 35.661588146833324 38.0 37.0 38.0 31.0 38.0 64-65 35.68564948351947 38.0 37.0 38.0 31.0 38.0 66-67 35.591018908857826 38.0 37.0 38.0 31.0 38.0 68-69 35.27679165742178 38.0 36.5 38.0 29.0 38.0 70-71 35.49944530729975 38.0 37.0 38.0 31.0 38.0 72-73 35.52185489238961 38.0 37.0 38.0 31.0 38.0 74-75 35.54544782190666 38.0 37.0 38.0 31.0 38.0 76 34.4205063728028 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 15.0 14 37.0 15 66.0 16 112.0 17 178.0 18 177.0 19 170.0 20 156.0 21 149.0 22 179.0 23 148.0 24 214.0 25 212.0 26 295.0 27 326.0 28 418.0 29 464.0 30 609.0 31 773.0 32 972.0 33 1353.0 34 1944.0 35 3192.0 36 6394.0 37 22009.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.94800680423045 19.57695436728053 10.945935951482879 26.52910287700614 2 22.40465448808027 20.148904173754406 32.35707418090378 25.089367157261545 3 18.709168454009813 21.941177920765227 28.851416315361288 30.49823730986367 4 13.344673717427211 16.125533121317456 36.43221655203018 34.09757660922516 5 12.965017380371274 33.89788723713729 36.77982397751646 16.357271404974977 6 29.608263688583193 37.26548825284126 18.100239134186328 15.026008924389222 7 28.846485713581345 28.82429800557158 22.633927470847816 19.695288809999262 8 25.096763059931465 34.679387619258925 19.853068066957572 20.370781253852034 9 23.984912358553363 15.812439908290807 21.48509725612011 38.71755047703572 10-11 24.274585213125263 25.099228360821442 27.84680620269704 22.77938022335626 12-13 24.389221704509033 23.059191874368267 27.309370608682787 25.242215812439913 14-15 22.27769149224663 24.28691171757513 24.819416709809435 28.615980080368807 16-17 22.488474718339376 27.401819392056805 25.93743066341247 24.172275226191356 18-19 22.028696102359294 27.3549786751473 26.98518354165126 23.631141680842145 20-21 21.729162044227497 27.234178931538594 27.080097625915243 23.956561398318666 22-23 22.271528240021695 26.859453196262606 26.943273426521706 23.925745137193992 24-25 21.726696743337524 27.105983285259967 27.032024258560757 24.135295712841753 26-27 21.583709291719057 27.17008110839928 27.442496856741368 23.803712743140302 28-29 22.170450903532775 27.133101595049673 28.00828341099031 22.688164090427236 30-31 22.08663067327367 27.036954860340707 27.290880852007987 23.585533614377635 32-33 21.509750265019846 27.295811453787934 27.10968123659493 24.084757044597293 34-35 22.44040135098489 26.874245001602446 27.175011710179227 23.510341937233438 36-37 22.410817740305205 26.304760496018538 27.075167024135293 24.20925473954096 38-39 21.773537460247024 27.210758573083844 27.97130389764071 23.044400069028427 40-41 21.578778689939107 26.37871952271775 28.154968813943743 23.887532973399402 42-43 22.007741044794518 26.92601632029189 27.401819392056805 23.66442324285679 44-45 21.384019919631193 26.616621058600202 27.60150876414467 24.397850257623944 46-47 21.45058304366048 26.83356753691788 27.9811651012006 23.73468431822104 48-49 21.186795848433302 26.625249611715105 28.36821734092646 23.81973719892513 50-51 21.074624657939502 26.95066932919163 27.87022656115179 24.104479451717083 52-53 21.388950521411136 26.234499420654288 28.620910682148754 23.755639375785815 54-55 20.89465769297143 27.00860390010601 28.081009787244533 24.015728619678033 56-57 20.52609520992037 26.879175603382393 28.21413603530311 24.380593151394127 58-59 20.7381110864581 26.74111875354387 28.390405048936223 24.130365111061806 60-61 20.381875107856914 26.342972659813128 28.400266252496113 24.874885979833838 62-63 20.088504301950053 26.301062544683578 28.71459211596775 24.895841037398615 64-65 21.051204299484752 26.591968049700466 28.07114858368464 24.285679067130143 66-67 20.799743608707445 26.262850380888985 27.80243078667751 25.13497522372606 68-69 20.443507630106257 26.473633606981732 27.619998520819465 25.46286024209255 70-71 21.381554618741216 25.822794172028697 27.748194167098095 25.04745704213199 72-73 21.493725809235016 25.780884056899144 27.316766511352707 25.408623622513126 74-75 21.649039765303353 25.676108769075267 27.130636294159704 25.544215171461676 76 22.495870621009296 25.382737963168406 26.763306461553633 25.358084954268666 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 2.0 15 2.5 16 8.0 17 14.0 18 16.0 19 32.5 20 54.5 21 62.0 22 73.5 23 104.0 24 152.5 25 182.0 26 212.0 27 286.5 28 371.0 29 411.0 30 488.0 31 622.0 32 789.0 33 899.0 34 966.5 35 1139.5 36 1349.0 37 1453.0 38 1534.0 39 1817.0 40 2166.0 41 2408.0 42 2503.0 43 2446.5 44 2428.5 45 2433.5 46 2400.0 47 2312.0 48 2107.5 49 1936.0 50 1881.0 51 1790.5 52 1518.0 53 1259.0 54 1182.0 55 1064.5 56 867.5 57 720.5 58 653.0 59 570.5 60 463.5 61 413.0 62 387.0 63 374.0 64 346.0 65 312.0 66 281.0 67 269.0 68 284.5 69 272.5 70 275.0 71 305.0 72 289.0 73 250.5 74 204.5 75 181.0 76 174.0 77 155.0 78 120.5 79 98.0 80 86.5 81 68.5 82 51.5 83 41.0 84 36.0 85 21.5 86 11.0 87 10.0 88 9.0 89 5.0 90 3.0 91 3.0 92 2.0 93 2.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 40563.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 67.86480289919385 #Duplication Level Percentage of deduplicated Percentage of total 1 76.6310665504214 52.00552227399354 2 13.92763731473409 18.90392722431773 3 4.5117698343504795 9.185711116041713 4 1.9289450741063645 5.236299090303972 5 1.0498401627433884 3.562359786011883 6 0.6647776809067132 2.7069003771910363 7 0.3814298169136879 1.8119961541306115 8 0.2688172043010753 1.4594581268643838 9 0.1961639058413252 1.19813623252718 >10 0.43955245568148793 3.929689618617952 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0024653008899736214 0.0 6 0.0 0.0 0.0 0.0024653008899736214 0.0 7 0.0 0.0 0.0 0.0024653008899736214 0.0 8 0.0 0.0 0.0 0.0024653008899736214 0.0 9 0.0 0.0 0.0 0.0024653008899736214 0.0 10 0.0 0.0 0.0 0.0024653008899736214 0.0 11 0.0 0.0 0.0 0.004930601779947243 0.0 12 0.0 0.0 0.0 0.007395902669920864 0.0 13 0.0 0.0 0.0 0.007395902669920864 0.0 14 0.0 0.0 0.0 0.007395902669920864 0.0 15 0.0 0.0 0.0 0.007395902669920864 0.0 16 0.0 0.0 0.0 0.007395902669920864 0.0 17 0.0 0.0 0.0 0.007395902669920864 0.0 18 0.0 0.0 0.0 0.007395902669920864 0.0 19 0.0 0.0 0.0 0.009861203559894486 0.0 20 0.0 0.0 0.0 0.009861203559894486 0.0 21 0.0 0.0 0.0 0.009861203559894486 0.0 22 0.0 0.0 0.0 0.009861203559894486 0.0 23 0.0 0.0 0.0 0.009861203559894486 0.0 24 0.0 0.0 0.0 0.009861203559894486 0.0 25 0.0 0.0 0.0 0.009861203559894486 0.0 26 0.0 0.0 0.0 0.009861203559894486 0.0 27 0.0 0.0 0.0 0.009861203559894486 0.0 28 0.0 0.0 0.0 0.014791805339841728 0.0 29 0.0 0.0 0.0 0.024653008899736213 0.0 30 0.0 0.0 0.0 0.027118309789709832 0.0 31 0.0 0.0 0.0 0.03204891156965708 0.0 32 0.0 0.0 0.0 0.03944481423957794 0.0 33 0.0 0.0 0.0 0.051771318689446046 0.0 34 0.0 0.0 0.0 0.09121613292902399 0.0 35 0.0 0.0 0.0 0.1281956462786283 0.0 36 0.0 0.0 0.0 0.1725710622981535 0.0 37 0.0 0.0 0.0 0.2761136996770456 0.0 38 0.0 0.0 0.0 0.40184404506570026 0.0 39 0.0 0.0 0.0 0.559623302024012 0.0 40 0.0 0.0 0.0 0.7667085767817963 0.0 41 0.0 0.0 0.0 0.9910509577693958 0.0 42 0.0 0.0 0.0 1.2868870645662303 0.0 43 0.0 0.0 0.0 1.634494490052511 0.0 44 0.0 0.0 0.0 2.095505756477578 0.0 45 0.0 0.0 0.0 2.5688435273525134 0.0 46 0.0 0.0 0.0 3.0890220151369476 0.0 47 0.0 0.0 0.0 3.572220989571777 0.0 48 0.0 0.0 0.0 4.119517787145921 0.0 49 0.0 0.0 0.0 4.5509454428913045 0.0 50 0.0 0.0 0.0 4.979907797746715 0.0 51 0.0 0.0 0.0 5.401474249932204 0.0 52 0.0 0.0 0.0 5.862485516357271 0.0 53 0.0 0.0 0.0 6.3456844907921015 0.0 54 0.0 0.0 0.0 6.838744668786825 0.0 55 0.0 0.0 0.0 7.371249661021127 0.0 56 0.0 0.0 0.0 7.884032246135641 0.0 57 0.0 0.0 0.0 8.411606636589996 0.0 58 0.0 0.0 0.0 8.870152602125088 0.0 59 0.0 0.0 0.0 9.32623326677021 0.0 60 0.0 0.0 0.0 9.819293444764934 0.0 61 0.0 0.0 0.0 10.297561817419815 0.0 62 0.0 0.0 0.0 10.7289894731652 0.0 63 0.0 0.0 0.0 11.249167960949634 0.0 64 0.0 0.0 0.0 11.853166678993171 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAAAGT 20 0.0069040107 52.500004 28 GGGCCCA 20 0.0069040107 52.500004 5 GCTAAAG 20 0.0069040107 52.500004 27 AGCAGCA 20 0.0069040107 52.500004 7 CTCAGGA 20 0.0069040107 52.500004 17 CCCACTG 35 0.0012414994 40.0 9 TTCGCAG 35 0.0012414994 40.0 36 CACTGCA 50 0.007129913 27.999998 15 ATCCTAT 70 0.0012062613 25.0 6 CTCAGAA 70 0.0012062613 25.0 20 CGACGAG 80 0.0026234589 21.875002 70 CTGACGC 275 1.8946196E-4 11.454545 70 TCTGACG 305 4.94262E-4 10.327868 69 ATCTGAC 360 0.0022547846 8.749999 68 CATCTGA 370 0.0028909189 8.513514 67 ACATCTG 375 0.0032643864 8.400001 66 CACATCT 390 0.004651034 8.076923 65 ACACATC 410 0.0072884643 7.682927 64 TACACAT 410 0.0072884643 7.682927 63 >>END_MODULE