##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781189_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 26004 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42947238886325 34.0 34.0 34.0 31.0 34.0 2 32.6211352099677 34.0 34.0 34.0 31.0 34.0 3 32.607060452238116 34.0 34.0 34.0 31.0 34.0 4 32.71558221812029 34.0 34.0 34.0 32.0 34.0 5 32.74842331948931 34.0 34.0 34.0 32.0 34.0 6 36.05056914320874 38.0 37.0 38.0 34.0 38.0 7 36.005076142131976 38.0 37.0 38.0 34.0 38.0 8 35.98161821258268 38.0 37.0 38.0 34.0 38.0 9 36.09187048146439 38.0 37.0 38.0 34.0 38.0 10-11 36.006845100753736 38.0 37.0 38.0 33.5 38.0 12-13 35.97967620366097 38.0 37.0 38.0 33.5 38.0 14-15 35.941739732348864 38.0 37.0 38.0 32.5 38.0 16-17 35.92393477926473 38.0 37.0 38.0 32.5 38.0 18-19 35.94983464082449 38.0 37.0 38.0 32.5 38.0 20-21 35.91491693585603 38.0 37.0 38.0 32.5 38.0 22-23 35.92306952776496 38.0 37.0 38.0 32.5 38.0 24-25 35.9656399015536 38.0 37.0 38.0 33.0 38.0 26-27 35.88328718658668 38.0 37.0 38.0 32.0 38.0 28-29 35.96771650515305 38.0 37.0 38.0 33.5 38.0 30-31 36.00796031379788 38.0 37.0 38.0 34.0 38.0 32-33 35.975292262728814 38.0 37.0 38.0 33.0 38.0 34-35 36.015920627595754 38.0 37.0 38.0 34.0 38.0 36-37 35.93568297185048 38.0 37.0 38.0 32.5 38.0 38-39 35.94531610521458 38.0 37.0 38.0 32.5 38.0 40-41 35.929491616674355 38.0 37.0 38.0 32.5 38.0 42-43 35.98463697892632 38.0 37.0 38.0 34.0 38.0 44-45 35.97210044608522 38.0 37.0 38.0 34.0 38.0 46-47 35.952468850946005 38.0 37.0 38.0 33.5 38.0 48-49 35.96204430087679 38.0 37.0 38.0 33.5 38.0 50-51 35.87705737578834 38.0 37.0 38.0 32.0 38.0 52-53 35.94691201353638 38.0 37.0 38.0 33.5 38.0 54-55 35.8926511305953 38.0 37.0 38.0 32.5 38.0 56-57 35.82571912013536 38.0 37.0 38.0 32.0 38.0 58-59 35.881383633287186 38.0 37.0 38.0 32.0 38.0 60-61 35.85919473927088 38.0 37.0 38.0 32.0 38.0 62-63 35.80137671127519 38.0 37.0 38.0 31.5 38.0 64-65 35.85323411782802 38.0 37.0 38.0 32.0 38.0 66-67 35.790013074911556 38.0 37.0 38.0 31.0 38.0 68-69 35.50463390247654 38.0 37.0 38.0 30.5 38.0 70-71 35.68183740962929 38.0 37.0 38.0 31.0 38.0 72-73 35.706506691278264 38.0 37.0 38.0 31.0 38.0 74-75 35.718754806952774 38.0 37.0 38.0 31.0 38.0 76 34.73634825411475 38.0 35.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 7.0 14 24.0 15 63.0 16 74.0 17 133.0 18 139.0 19 126.0 20 117.0 21 114.0 22 104.0 23 99.0 24 125.0 25 137.0 26 157.0 27 165.0 28 206.0 29 269.0 30 314.0 31 388.0 32 543.0 33 728.0 34 982.0 35 1735.0 36 3515.0 37 15740.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.56283648669435 19.950776803568683 9.975388401784341 28.510998307952622 2 21.696662051992003 20.42378095677588 31.902784187048145 25.976772804183973 3 17.974157821873558 21.692816489770806 28.945546838947855 31.387478849407785 4 13.0902938009537 17.108906322104293 36.50592216582064 33.294877711121366 5 12.494231656668205 34.05629903091832 35.80602984156284 17.643439470850637 6 27.557298877095832 38.74403937855714 18.527918781725887 15.170742962621137 7 26.445931395169975 30.41070604522381 22.41578218735579 20.727580372250422 8 23.48869404706968 34.96000615289955 19.604676203660976 21.94662359636979 9 22.538840178434086 15.712967235809874 21.300569143208737 40.4476234425473 10-11 23.357944931548992 25.27303491770497 27.472696508229504 23.89632364251654 12-13 23.15989847715736 23.259883094908478 26.688201815105366 26.892016612828794 14-15 21.738963236425164 24.615443777880326 24.059760036917396 29.585832948777114 16-17 21.848561759729275 27.188124903860945 25.4710813720966 25.492231964313184 18-19 21.442854945393016 27.599600061528996 26.2978772496539 24.659667743424087 20-21 21.733194893093373 27.514997692662668 26.232502691893554 24.51930472235041 22-23 21.47361944316259 27.1265959083218 26.430549146285188 24.96923550223043 24-25 20.452622673434856 27.707275803722503 26.56514382402707 25.274957698815566 26-27 20.46992770343024 27.372711890478392 27.17081987386556 24.986540532225813 28-29 20.61221350561452 27.216966620519923 27.8303337948008 24.34048607906476 30-31 21.2294262421166 27.420781418243344 27.072758037225043 24.27703430241501 32-33 20.791032148900168 27.614982310413783 26.999692355022304 24.594293185663744 34-35 21.16982002768805 26.753576372865712 27.48807875711429 24.58852484233195 36-37 21.85240732195047 26.57475772958006 26.895862175049995 24.67697277341947 38-39 20.78910936778957 27.79380095369943 27.4746192893401 23.942470389170897 40-41 20.852561144439317 26.52091985848331 27.838024919243193 24.78849407783418 42-43 20.827564990001537 27.372711890478392 27.426549761575142 24.373173357944932 44-45 20.671819720043068 27.730349177049685 26.963159513920935 24.634671588986308 46-47 20.983310259960007 26.928549453930167 27.111213659437013 24.976926626672817 48-49 21.065989847715734 27.21888940163052 26.820873711736652 24.89424703891709 50-51 20.78910936778957 27.40732195046916 26.803568681741268 25.0 52-53 20.744885402245806 26.901630518381786 27.19389324719274 25.159590832179664 54-55 20.521842793416397 26.968927857252726 27.27657283494847 25.232656514382402 56-57 19.995000769112444 27.249653899400094 27.609213967081985 25.146131364405477 58-59 20.687201968927855 26.955468389478543 27.078526380556838 25.278803261036764 60-61 20.429549300107674 26.50746039070912 27.395785263805568 25.667205045377635 62-63 19.570066143670203 26.628595600676817 28.209121673588676 25.592216582064296 64-65 20.56798954007076 27.176588217197356 27.165051530533763 25.090370712198123 66-67 20.03537917243501 26.597831102907243 27.578449469312417 25.788340255345332 68-69 19.83925549915398 26.115213044147055 27.463082602676515 26.582448854022456 70-71 20.691047531149053 26.89970773727119 27.413090293800952 24.996154437778802 72-73 20.61221350561452 25.859483156437474 27.05545300722966 26.47285033071835 74-75 21.052530379941548 25.905629903091832 27.11313644054761 25.928703276419014 76 21.185202276572834 26.107521919704663 26.761267497308104 25.9460083064144 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 2.0 16 5.0 17 7.0 18 8.5 19 10.0 20 15.5 21 21.0 22 29.0 23 45.5 24 66.5 25 79.0 26 104.0 27 142.5 28 195.0 29 234.0 30 259.5 31 322.0 32 432.0 33 505.0 34 555.0 35 694.0 36 890.5 37 998.0 38 1046.5 39 1253.0 40 1469.5 41 1588.5 42 1649.0 43 1629.5 44 1586.0 45 1572.5 46 1583.0 47 1544.0 48 1424.5 49 1330.5 50 1317.0 51 1183.5 52 960.5 53 778.5 54 686.0 55 665.0 56 581.5 57 485.5 58 452.0 59 383.5 60 300.5 61 240.0 62 194.0 63 197.0 64 201.5 65 195.5 66 177.5 67 167.0 68 187.0 69 193.0 70 160.0 71 141.0 72 161.0 73 155.0 74 115.0 75 101.0 76 104.5 77 90.0 78 73.0 79 74.0 80 62.5 81 45.0 82 37.0 83 35.0 84 23.0 85 9.0 86 7.0 87 7.0 88 5.5 89 2.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 26004.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 66.45900630672205 #Duplication Level Percentage of deduplicated Percentage of total 1 76.3453304015739 50.73834794646977 2 13.632681402615438 18.120289186279035 3 4.501793773868766 8.97554222427319 4 2.065733132739266 5.491462851868943 5 1.2556417081356326 4.172435009998462 6 0.8100914246036338 3.2302722658052603 7 0.4050457123018169 1.884325488386402 8 0.34139567179724567 1.8151053684048606 9 0.17359101955792153 1.0383017997231194 >10 0.4686957528063881 4.533917858790955 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTCTAGAGCCCACTGTAAAGCTAACTTAGCATTAACCTTTTAAGTTAAAG 39 0.14997692662667284 No Hit CTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTAACAT 32 0.12305799107829565 No Hit CTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAA 31 0.1192124288570989 No Hit CCCTAGGAGGGCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATT 28 0.1076757421935087 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 0.003845562221196739 0.0 22 0.0 0.0 0.0 0.03845562221196739 0.0 23 0.0 0.0 0.0 0.046146746654360866 0.0 24 0.0 0.0 0.0 0.049992308875557605 0.0 25 0.0 0.0 0.0 0.049992308875557605 0.0 26 0.0 0.0 0.0 0.049992308875557605 0.0 27 0.0 0.0 0.0 0.049992308875557605 0.0 28 0.0 0.0 0.0 0.05383787109675434 0.0 29 0.0 0.0 0.0 0.05383787109675434 0.0 30 0.0 0.0 0.0 0.05768343331795108 0.0 31 0.0 0.0 0.0 0.06537455776034456 0.0 32 0.0 0.0 0.0 0.06537455776034456 0.0 33 0.0 0.0 0.0 0.08075680664513152 0.0 34 0.0 0.0 0.0 0.09229349330872173 0.0 35 0.0 0.0 0.0 0.09998461775111521 0.0 36 0.0 0.0 0.0 0.11536686663590216 0.0 37 0.0 0.0 0.0 0.18074142439624674 0.0 38 0.0 0.0 0.0 0.24996154437778803 0.0 39 0.0 0.0 0.0 0.3191816643593293 0.0 40 0.0 0.0 0.0 0.4114751576680511 0.0 41 0.0 0.0 0.0 0.48069527764959236 0.0 42 0.0 0.0 0.0 0.5922165820642978 0.0 43 0.0 0.0 0.0 0.796031379787725 0.0 44 0.0 0.0 0.0 0.9498538686355945 0.0 45 0.0 0.0 0.0 1.1805876019073989 0.0 46 0.0 0.0 0.0 1.4382402707275803 0.0 47 0.0 0.0 0.0 1.7766497461928934 0.0 48 0.0 0.0 0.0 2.065066912782649 0.0 49 0.0 0.0 0.0 2.3304107060452237 0.0 50 0.0 0.0 0.0 2.568835563759422 0.0 51 0.0 0.0 0.0 2.8687894170127675 0.0 52 0.0 0.0 0.0 3.1187509613905555 0.0 53 0.0 0.0 0.0 3.37255806798954 0.0 54 0.0 0.0 0.0 3.6455929856945084 0.0 55 0.0 0.0 0.0 4.007075834487002 0.0 56 0.0 0.0 0.0 4.372404245500692 0.0 57 0.0 0.0 0.0 4.760806029841563 0.0 58 0.0 0.0 0.0 5.137671127518844 0.0 59 0.0 0.0 0.0 5.48377172742655 0.0 60 0.0 0.0 0.0 5.799107829564682 0.0 61 0.0 0.0 0.0 6.17981848946316 0.0 62 0.0 0.0 0.0 6.575911398246424 0.0 63 0.0 0.0 0.0 6.879710813720966 0.0 64 0.0 0.0 0.0 7.237348100292262 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAATCTG 15 0.0022004605 70.00001 37 TTGTTAT 20 0.006876243 52.5 65 TTGAGTC 20 0.006876243 52.5 52 CCCATCC 20 0.006876243 52.5 8 AACTTCG 20 0.006876243 52.5 33 AGGCCAG 20 0.006876243 52.5 59 TCTCCGC 20 0.006876243 52.5 19 CAAACTA 20 0.006876243 52.5 31 TACTCAT 20 0.006876243 52.5 24 ATACATT 20 0.006876243 52.5 11 CATACAT 20 0.006876243 52.5 10 TTTGTTA 20 0.006876243 52.5 64 TGAAACT 20 0.006876243 52.5 30 CTCCGAT 20 0.006876243 52.5 14 CGATCCG 20 0.006876243 52.5 17 TTTGAGT 40 0.0023763506 35.0 51 CTAGGAG 40 0.0023763506 35.0 35 AACAGCC 40 0.0023763506 35.0 36 >>END_MODULE