SRR1781189_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781189_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24638
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT	100	0.4058771004139946	No Hit
ATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGTCTT	51	0.2069973212111373	RNA PCR Primer, Index 32 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTTGA	15	0.0021990421	70.00001	25
AATCTCG	25	2.3451801E-4	56.000004	36
ATCTCGT	25	2.3451801E-4	56.000004	37
TCTCGTA	25	2.3451801E-4	56.000004	38
CTATACA	20	0.0068718432	52.5	1
CGTATGC	35	2.0279402E-5	50.000004	41
GCCGTCT	35	2.0279402E-5	50.000004	46
TGCCGTC	40	4.464397E-5	43.75	45
TATGCCG	40	4.464397E-5	43.75	43
CAATCTT	40	4.464397E-5	43.75	29
CCGTCTT	40	4.464397E-5	43.75	47
TCGTATG	40	4.464397E-5	43.75	40
CTCGTAT	40	4.464397E-5	43.75	39
TTCTGCT	35	0.0012319708	40.000004	52
TAATCTC	35	0.0012319708	40.000004	35
CTGCTTG	35	0.0012319708	40.000004	54
TCTTCTG	35	0.0012319708	40.000004	50
CGTCTTC	35	0.0012319708	40.000004	48
CTTCTGC	35	0.0012319708	40.000004	51
ATGCCGT	45	8.942012E-5	38.888885	44