##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781187_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 81304 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.477774771228965 34.0 34.0 34.0 31.0 34.0 2 32.59081963987012 34.0 34.0 34.0 31.0 34.0 3 32.5657778215094 34.0 34.0 34.0 31.0 34.0 4 32.64958673619994 34.0 34.0 34.0 31.0 34.0 5 32.66264882416609 34.0 34.0 34.0 31.0 34.0 6 35.85418921578274 38.0 37.0 38.0 32.0 38.0 7 35.79280232214897 38.0 37.0 38.0 31.0 38.0 8 35.69732116501033 38.0 37.0 38.0 31.0 38.0 9 35.868678047820524 38.0 37.0 38.0 32.0 38.0 10-11 35.7954590180065 38.0 37.0 38.0 31.5 38.0 12-13 35.74769384040145 38.0 37.0 38.0 31.0 38.0 14-15 35.68679277772311 38.0 37.0 38.0 31.0 38.0 16-17 35.65742152907606 38.0 37.0 38.0 31.0 38.0 18-19 35.67437026468562 38.0 37.0 38.0 31.0 38.0 20-21 35.63551608776936 38.0 37.0 38.0 31.0 38.0 22-23 35.6661787857916 38.0 37.0 38.0 31.0 38.0 24-25 35.64129071140411 38.0 37.0 38.0 31.0 38.0 26-27 35.6097977959264 38.0 37.0 38.0 31.0 38.0 28-29 35.67152292630129 38.0 37.0 38.0 31.0 38.0 30-31 35.71139181344091 38.0 37.0 38.0 31.0 38.0 32-33 35.658184099183316 38.0 37.0 38.0 31.0 38.0 34-35 35.68871765226803 38.0 37.0 38.0 31.0 38.0 36-37 35.61159967529272 38.0 37.0 38.0 31.0 38.0 38-39 35.60923816786382 38.0 37.0 38.0 31.0 38.0 40-41 35.60964405195317 38.0 37.0 38.0 31.0 38.0 42-43 35.658202548460096 38.0 37.0 38.0 31.0 38.0 44-45 35.68145478697235 38.0 37.0 38.0 31.0 38.0 46-47 35.66268572271967 38.0 37.0 38.0 31.0 38.0 48-49 35.63546688969792 38.0 37.0 38.0 31.0 38.0 50-51 35.558908540785204 38.0 37.0 38.0 31.0 38.0 52-53 35.60949645773886 38.0 37.0 38.0 31.0 38.0 54-55 35.59746137951392 38.0 37.0 38.0 31.0 38.0 56-57 35.52793835481649 38.0 37.0 38.0 31.0 38.0 58-59 35.53542876119256 38.0 37.0 38.0 31.0 38.0 60-61 35.51888590967234 38.0 37.0 38.0 31.0 38.0 62-63 35.47248597854964 38.0 36.0 38.0 31.0 38.0 64-65 35.46446669290563 38.0 36.0 38.0 31.0 38.0 66-67 35.36242374298928 38.0 36.0 38.0 30.0 38.0 68-69 35.06954762373315 38.0 36.0 38.0 27.5 38.0 70-71 35.27774156253075 38.0 36.0 38.0 28.5 38.0 72-73 35.26655515103808 38.0 36.0 38.0 28.0 38.0 74-75 35.279020712388075 38.0 36.0 38.0 28.5 38.0 76 34.01336957591263 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 11.0 14 32.0 15 112.0 16 156.0 17 243.0 18 309.0 19 337.0 20 297.0 21 278.0 22 318.0 23 361.0 24 380.0 25 501.0 26 585.0 27 766.0 28 846.0 29 1066.0 30 1400.0 31 1924.0 32 2437.0 33 3377.0 34 4770.0 35 7705.0 36 14134.0 37 38959.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.58083243136869 18.46895601692414 9.794106071042014 27.15610548066516 2 23.024697431860673 19.69152809209879 31.093181147299028 26.190593328741514 3 19.52794450457542 21.44420938699203 27.713273639673325 31.314572468759224 4 13.924284168060613 15.552740332578963 35.24672832824953 35.27624717111089 5 14.13337597166191 32.97500737971071 35.045016235363576 17.8466004132638 6 30.70697628652957 35.624323526517756 17.92285742398898 15.74584276296369 7 29.596329823870903 28.531191577290173 21.40116107448588 20.471317524353044 8 26.126635835875234 33.62688182623241 19.02489422414641 21.22158811374594 9 24.025878185575124 16.344829282692118 20.765276001180755 38.86401653055201 10-11 25.308717898258386 23.850610056085802 26.750836367214404 24.089835678441403 12-13 24.982165699104595 22.333464528190493 26.20350782249336 26.480861950211555 14-15 23.171676670274525 23.607079602479583 23.23501918724786 29.98622453999803 16-17 23.620609072124374 26.646290465413756 24.658073403522582 25.07502705893929 18-19 22.83897471219128 26.49070156449867 25.76318508314474 24.907138640165304 20-21 23.12186362294598 26.171529076060217 25.842516973334646 24.864090327659156 22-23 23.23378923546197 25.575002459903573 26.346182229656595 24.84502607497786 24-25 22.91092689166585 25.986421332283776 26.115566269802226 24.987085506248157 26-27 22.406031683558005 26.136475450162354 26.296369182328057 25.16112368395159 28-29 22.951515300600217 26.210272557315754 26.791424776148776 24.046787365935256 30-31 23.179056380989866 25.956287513529468 26.253320869821906 24.611335235658764 32-33 22.731968906818853 26.2723851225032 26.110646462658664 24.884999508019284 34-35 23.431196497097314 25.70722227688675 26.313588507330515 24.54799271868543 36-37 23.26576798189511 25.804388467972057 25.972276886746037 24.957566663386796 38-39 22.50258289875037 26.4691774082456 26.518990455574144 24.50924923742989 40-41 22.863573747909083 25.654334350093478 26.916879858309557 24.565212043687886 42-43 22.600364065728623 25.614975892944997 26.99252189314179 24.79213814818459 44-45 22.233838433533407 25.825297648332185 26.820328643117193 25.120535275017218 46-47 22.322394962117485 25.252140116107448 27.174554757453507 25.25091016432156 48-49 22.014292039752043 25.29395847682771 27.538620486076947 25.153128997343305 50-51 21.567819541473973 25.506740135786675 27.58228377447604 25.343156548263305 52-53 21.613327757551904 25.203557020564794 28.01399685132343 25.169118370559872 54-55 20.79540981993506 25.52580438846797 28.30549542457936 25.373290367017614 56-57 20.83107842172587 25.786554167076652 28.087793958476826 25.294573452720652 58-59 21.2388074387484 25.7066073009938 27.56014464233002 25.494440617927776 60-61 21.012496310144645 25.31117780183017 27.807364951293913 25.868960936731277 62-63 20.66380497884483 25.20294204467185 28.08656400669094 26.046688969792385 64-65 21.306454786972353 25.429868149168556 27.43161468070452 25.83206238315458 66-67 21.304609859293517 24.90406376070058 27.106292433336616 26.68503394666929 68-69 21.31014464233002 24.870240086588606 26.87998130473285 26.93963396634852 70-71 22.076404604939487 24.9016038571288 26.910730099380103 26.111261438551608 72-73 22.392502213913215 24.579356489225624 26.144470136770636 26.883671160090522 74-75 22.715979533602283 24.5572173570796 26.045459018006493 26.681344091311622 76 23.51667814621667 24.178392207025485 25.53871888221982 26.76621076453803 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 0.5 12 0.0 13 4.0 14 6.0 15 8.5 16 16.5 17 20.0 18 30.5 19 51.0 20 82.0 21 103.0 22 119.5 23 183.5 24 297.0 25 363.0 26 389.0 27 492.5 28 684.5 29 799.0 30 855.0 31 993.5 32 1312.5 33 1549.0 34 1671.0 35 2006.0 36 2457.5 37 2696.0 38 2865.5 39 3377.5 40 3978.0 41 4423.0 42 4610.0 43 4529.0 44 4532.0 45 4531.0 46 4446.0 47 4416.5 48 4208.5 49 3832.0 50 3634.0 51 3328.0 52 2787.0 53 2371.0 54 2190.0 55 1963.0 56 1632.0 57 1407.5 58 1287.0 59 1220.0 60 1062.5 61 956.0 62 940.0 63 950.0 64 932.5 65 963.0 66 1037.0 67 1053.0 68 1035.0 69 1009.5 70 941.5 71 881.0 72 901.0 73 840.0 74 742.5 75 726.0 76 660.5 77 576.5 78 494.5 79 431.0 80 377.0 81 266.0 82 176.0 83 143.0 84 121.0 85 81.5 86 48.5 87 33.0 88 28.0 89 18.5 90 11.5 91 5.5 92 2.0 93 2.0 94 1.5 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 81304.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.646364262520905 #Duplication Level Percentage of deduplicated Percentage of total 1 75.55071268700672 47.329774672832826 2 13.792358738759964 17.2808225917544 3 4.372324969568461 8.217307881531044 4 1.9908116385911179 4.988684443569812 5 1.2035182785565635 3.7698022237528286 6 0.7382102328503554 2.7747712289678246 7 0.6066674519967016 2.660385712880055 8 0.42211489378411277 2.115517071730788 9 0.28075548749361917 1.5829479484404212 >10 1.0385989712176542 9.12501229951786 >50 0.003926650174735933 0.15497392502213914 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.001229951785889993 0.0 6 0.0 0.0 0.0 0.001229951785889993 0.0 7 0.0 0.0 0.0 0.001229951785889993 0.0 8 0.0 0.0 0.0 0.001229951785889993 0.0 9 0.0 0.0 0.0 0.002459903571779986 0.0 10 0.0 0.0 0.0 0.002459903571779986 0.0 11 0.0 0.0 0.0 0.002459903571779986 0.0 12 0.0 0.0 0.0 0.002459903571779986 0.0 13 0.0 0.0 0.0 0.002459903571779986 0.0 14 0.0 0.0 0.0 0.002459903571779986 0.0 15 0.0 0.0 0.0 0.002459903571779986 0.0 16 0.0 0.0 0.0 0.002459903571779986 0.0 17 0.0 0.0 0.0 0.002459903571779986 0.0 18 0.0 0.0 0.0 0.002459903571779986 0.0 19 0.0 0.0 0.0 0.004919807143559972 0.0 20 0.0 0.0 0.0 0.004919807143559972 0.0 21 0.0 0.0 0.0 0.006149758929449966 0.0 22 0.0 0.0 0.0 0.008609662501229952 0.0 23 0.0 0.0 0.0 0.009839614287119944 0.0 24 0.0 0.0 0.0 0.011069566073009938 0.0 25 0.0 0.0 0.0 0.012299517858899931 0.0 26 0.0 0.0 0.0 0.012299517858899931 0.0 27 0.0 0.0 0.0 0.018449276788349896 0.0 28 0.0 0.0 0.0 0.03197874643313982 0.0 29 0.0 0.0 0.0 0.05165797500737971 0.0 30 0.0 0.0 0.0 0.06395749286627964 0.0 31 0.0 0.0 0.0 0.07625701072517957 0.0 32 0.0 0.0 0.0 0.09224638394174949 0.0 33 0.0 0.0 0.0 0.12053527501721932 0.0 34 0.0 0.0 0.0 0.17342320181048904 0.0 35 0.0 0.0 0.0 0.24107055003443864 0.0 36 0.0 0.0 0.0 0.3677555839811079 0.0 37 0.0 0.0 0.0 0.5633179179376169 0.0 38 0.0 0.0 0.0 0.8462068286923152 0.0 39 0.0 0.0 0.0 1.1561546787365935 0.0 40 0.0 0.0 0.0 1.4661025287808718 0.0 41 0.0 0.0 0.0 1.8793663288399094 0.0 42 0.0 0.0 0.0 2.2704909967529274 0.0 43 0.0 0.0 0.0 2.795680409327954 0.0 44 0.0 0.0 0.0 3.389747121912821 0.0 45 0.0 0.0 0.0 4.103119157729017 0.0 46 0.0 0.0 0.0 4.825100856046443 0.0 47 0.0 0.0 0.0 5.627029420446719 0.0 48 0.0 0.0 0.0 6.282593722326085 0.0 49 0.0 0.0 0.0 6.954147397422021 0.0 50 0.0 0.0 0.0 7.626931024303848 0.0 51 0.0 0.0 0.0 8.303404506543343 0.0 52 0.0 0.0 0.0 8.87287218341041 0.0 53 0.0 0.0 0.0 9.473088654924727 0.0 54 0.0 0.0 0.0 10.166781462166684 0.0 55 0.0 0.0 0.0 10.84448489619207 0.0 56 0.0 0.0 0.0 11.576306208796614 0.0 57 0.0 0.0 0.0 12.25769949817967 0.0 58 0.0 0.0 0.0 12.908343992915478 0.0 59 0.0 0.0 0.0 13.528239693004034 0.0 60 0.0 0.0 0.0 14.22439240381777 0.0 61 0.0 0.0 0.0 14.856587621765227 0.0 62 0.0 0.0 0.0 15.467873659352554 0.0 63 0.0 0.0 0.0 16.16156646659451 0.0 64 0.0 0.0 0.0 16.794991636327858 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCCA 15 0.0022174548 70.00001 15 ATAGTCC 15 0.0022174548 70.00001 56 TAGGATC 15 0.0022174548 70.00001 5 GCGTCCC 15 0.0022174548 70.00001 19 GCACTTG 15 0.0022174548 70.00001 68 ACTTCGG 20 0.0069289403 52.499996 24 TCGATTC 20 0.0069289403 52.499996 47 AAGCGCG 20 0.0069289403 52.499996 7 GACTTGT 20 0.0069289403 52.499996 44 CTAACTA 20 0.0069289403 52.499996 42 GTTCGAT 20 0.0069289403 52.499996 45 TGGATTC 20 0.0069289403 52.499996 28 GGATTCT 20 0.0069289403 52.499996 29 GGTTCGA 20 0.0069289403 52.499996 44 TTCGATT 20 0.0069289403 52.499996 46 CTATACA 35 0.0012488994 40.0 4 AATACCA 35 0.0012488994 40.0 5 TGACAAC 50 1.696569E-4 35.0 39 CCTATAC 50 1.696569E-4 35.0 3 CATATTC 40 0.0024062789 34.999996 38 >>END_MODULE