##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781186_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7554 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.835451416468096 34.0 32.0 34.0 27.0 34.0 2 32.39290442149854 34.0 34.0 34.0 27.0 34.0 3 32.71789780248875 34.0 34.0 34.0 31.0 34.0 4 32.952475509663756 34.0 34.0 34.0 31.0 34.0 5 32.70916070955785 34.0 34.0 34.0 31.0 34.0 6 35.66944665078104 37.0 36.0 38.0 31.0 38.0 7 35.66521048451152 37.0 36.0 38.0 31.0 38.0 8 35.16296002118083 37.0 35.0 38.0 27.0 38.0 9 35.39687582737623 37.0 35.0 38.0 31.0 38.0 10-11 35.23610007942811 37.0 35.0 38.0 30.5 38.0 12-13 35.207439767010854 37.0 35.0 38.0 29.0 38.0 14-15 35.27713794016415 37.0 35.0 38.0 30.5 38.0 16-17 35.16739475774424 37.0 35.0 38.0 27.0 38.0 18-19 35.248411437648926 37.0 35.0 38.0 31.0 38.0 20-21 35.131519724649195 37.0 35.0 38.0 27.0 38.0 22-23 35.12926926131851 37.0 35.0 38.0 27.0 38.0 24-25 35.130328302885886 37.0 35.0 38.0 27.0 38.0 26-27 34.85980937251787 37.0 34.5 38.0 27.0 38.0 28-29 34.869473126820225 37.0 34.0 38.0 27.0 38.0 30-31 34.94499602859412 37.0 34.5 38.0 27.0 38.0 32-33 34.84868943606037 37.0 34.0 38.0 27.0 38.0 34-35 34.75006619009796 37.0 34.0 38.0 27.0 38.0 36-37 34.64714058776807 37.0 34.0 38.0 27.0 38.0 38-39 34.78594122319301 37.0 34.0 38.0 27.0 38.0 40-41 34.6799708763569 37.0 34.0 38.0 27.0 38.0 42-43 34.59696849351337 37.0 34.0 38.0 27.0 38.0 44-45 34.64019062748213 37.0 34.0 38.0 27.0 38.0 46-47 34.61139793486895 37.0 34.0 38.0 26.5 38.0 48-49 34.595909451945985 37.0 34.0 38.0 27.0 38.0 50-51 34.634299708763564 37.0 34.0 38.0 27.0 38.0 52-53 34.47709822610537 37.0 34.0 38.0 26.5 38.0 54-55 34.4361265554673 37.0 34.0 38.0 26.0 38.0 56-57 34.438244638602065 37.0 34.0 38.0 26.0 38.0 58-59 34.44612126025947 37.0 34.0 38.0 26.5 38.0 60-61 34.39230871061689 37.0 34.0 38.0 26.0 38.0 62-63 34.34385755890919 37.0 34.0 38.0 25.0 38.0 64-65 34.25152237225311 37.0 34.0 38.0 24.5 38.0 66-67 34.26052422557585 37.0 34.0 38.0 25.0 38.0 68-69 34.246227164416204 37.0 34.0 38.0 24.5 38.0 70-71 34.22511252316653 37.0 34.0 38.0 25.0 38.0 72-73 34.184207042626426 37.0 34.0 38.0 24.0 38.0 74-75 34.22809107757479 37.0 34.0 38.0 24.5 38.0 76 33.15369340746624 37.0 32.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 1.0 21 2.0 22 1.0 23 11.0 24 13.0 25 33.0 26 51.0 27 95.0 28 144.0 29 210.0 30 297.0 31 435.0 32 544.0 33 705.0 34 930.0 35 1171.0 36 1436.0 37 1474.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.516282764098484 20.20121789780249 9.10775747948107 20.17474185861795 2 27.813079163357163 24.15938575589092 27.852793222133972 20.17474185861795 3 24.040243579560496 24.66243050039714 27.614508869473127 23.682817050569234 4 18.109610802223987 19.817315329626688 36.12655546730209 25.946518400847236 5 18.5729414879534 34.25999470479216 32.777336510458035 14.389727296796398 6 32.72438443208896 36.40455387873974 18.109610802223987 12.761450886947312 7 31.771247021445593 29.414879534021708 22.319301032565527 16.49457241196717 8 28.10431559438708 34.98808578236696 19.55255493778131 17.355043685464654 9 28.713264495631453 18.294943076515754 21.2205454064072 31.771247021445593 10-11 28.88535875033095 25.033095048980673 26.773894625364047 19.307651575324332 12-13 28.92507280910776 22.74953666931427 26.317182949430766 22.008207572147207 14-15 26.363516018003708 24.894095843261848 24.106433677521842 24.635954461212602 16-17 26.57532433148001 26.98570293884035 25.35742652899126 21.08154620068838 18-19 25.70823404818639 26.515753243314798 26.376754037595973 21.39925867090283 20-21 26.21127879269261 26.648133439237494 26.330420969023034 20.81016679904686 22-23 26.356897008207575 26.595181360868413 26.634895419645222 20.413026211278794 24-25 26.303944929838497 26.52899126290707 26.846703733121522 20.32036007413291 26-27 25.628805930632776 27.581413820492457 26.555467302091607 20.234312946783163 28-29 25.92666137145883 25.906804342070426 27.832936192745567 20.33359809372518 30-31 25.529520783690764 25.575853852263702 27.965316388668253 20.929308975377285 32-33 25.476568705321682 27.773365104580357 26.760656605771775 19.989409584326186 34-35 26.01932750860471 26.965845909451946 26.449563145353455 20.565263436589888 36-37 26.3238019592269 26.171564733915808 27.091607095578503 20.413026211278794 38-39 26.125231665342863 26.376754037595973 27.409319565792956 20.088694731268202 40-41 25.886947312682025 26.151707704527404 27.95869737887212 20.00264760391845 42-43 26.23775483187715 26.131850675139003 27.6476039184538 19.98279057453005 44-45 24.536669314270583 26.37013502779984 27.621127879269263 21.47206777866031 46-47 25.946518400847236 26.198040773100345 27.171035213132118 20.684405612920305 48-49 25.549377813079165 25.80751919512841 28.362456976436324 20.2806460153561 50-51 25.906804342070426 26.608419380460685 27.574794810696318 19.90998146677257 52-53 26.204659782896478 26.82022769393699 26.965845909451946 20.009266613714587 54-55 25.430235636748744 25.64866296002118 27.79984114376489 21.12126025946518 56-57 25.29123643102992 25.569234842467566 28.124172623775483 21.015356102727033 58-59 25.370664548583534 26.740799576383374 26.992321948636484 20.896213926396612 60-61 24.841143764892774 27.098226105374636 27.786603124172625 20.27402700555997 62-63 24.417527137940166 27.23060630129733 28.481599152766744 19.870267407995765 64-65 25.377283558379666 26.694466507810432 27.098226105374636 20.830023828435266 66-67 25.66190097961345 27.03203600741329 26.555467302091607 20.750595710881655 68-69 24.17262377548319 27.243844320889593 28.0315064866296 20.55202541699762 70-71 24.563145353455123 27.051893036801694 27.766746094784224 20.618215514958962 72-73 25.628805930632776 25.45671167593328 28.024887476833467 20.889594916600476 74-75 24.834524755096638 26.416468096372782 28.0315064866296 20.717500661900978 76 26.806989674344717 26.092136616362193 26.23775483187715 20.86311887741594 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 1.0 16 0.5 17 0.0 18 3.5 19 6.5 20 5.0 21 4.0 22 6.0 23 16.0 24 28.0 25 32.0 26 29.0 27 34.0 28 52.0 29 62.0 30 77.0 31 99.5 32 133.5 33 160.0 34 164.0 35 195.0 36 239.0 37 256.0 38 272.0 39 323.0 40 374.0 41 413.0 42 436.0 43 476.0 44 520.0 45 500.0 46 476.0 47 490.5 48 472.5 49 388.0 50 336.0 51 320.0 52 260.0 53 216.5 54 217.0 55 191.0 56 154.0 57 121.5 58 100.0 59 98.0 60 87.5 61 64.5 62 50.0 63 54.5 64 63.0 65 65.5 66 61.0 67 58.0 68 60.0 69 58.5 70 51.0 71 47.0 72 44.0 73 50.0 74 50.0 75 41.0 76 35.5 77 31.5 78 32.5 79 32.0 80 24.5 81 16.0 82 10.0 83 5.0 84 6.5 85 4.5 86 0.5 87 0.0 88 0.5 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 7554.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.79163357161768 #Duplication Level Percentage of deduplicated Percentage of total 1 84.46665574307718 68.24199099814668 2 10.84712436506636 17.52713794016415 3 2.8674422415205636 6.949960285941223 4 0.8848107488120597 2.8594122319301034 5 0.5898738325413732 2.3828435266084194 6 0.180239226609864 0.8737092930897538 7 0.08192692118630182 0.46333068572941494 8 0.016385384237260363 0.10590415673815197 9 0.0 0.0 >10 0.06554153694904145 0.5957108816521048 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ATACACATCTCCGAGCCCACGAGACCCTCGCAGATCTCGTATGCCGTCTT 13 0.17209425469949696 Illumina PCR Primer Index 9 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACCCTCGCAGATCTCGTATGCCGT 12 0.15885623510722796 No Hit TAGTAGAAGAGCGATGGTGAGAGCTAAGGTCGGGGCGGTGATGTAGAGGG 10 0.13238019592268996 No Hit GCCTAGGATTGTGGGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTT 10 0.13238019592268996 No Hit ATGATAGGCATGTGATTGGTGGGTCATTATGTGTTGTCGTGCAGGTAGAG 8 0.10590415673815197 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.013238019592268996 0.0 20 0.0 0.0 0.0 0.013238019592268996 0.0 21 0.0 0.0 0.0 0.013238019592268996 0.0 22 0.0 0.0 0.0 0.013238019592268996 0.0 23 0.0 0.0 0.0 0.013238019592268996 0.0 24 0.0 0.0 0.0 0.013238019592268996 0.0 25 0.0 0.0 0.0 0.013238019592268996 0.0 26 0.0 0.0 0.0 0.013238019592268996 0.0 27 0.0 0.0 0.0 0.013238019592268996 0.0 28 0.0 0.0 0.0 0.013238019592268996 0.0 29 0.0 0.0 0.0 0.013238019592268996 0.0 30 0.0 0.0 0.0 0.013238019592268996 0.0 31 0.0 0.0 0.0 0.013238019592268996 0.0 32 0.0 0.0 0.0 0.026476039184537992 0.0 33 0.0 0.0 0.0 0.026476039184537992 0.0 34 0.0 0.0 0.0 0.026476039184537992 0.0 35 0.0 0.0 0.0 0.03971405877680699 0.0 36 0.0 0.0 0.0 0.052952078369075985 0.0 37 0.0 0.0 0.0 0.14561821551495896 0.0 38 0.0 0.0 0.0 0.18533227429176596 0.0 39 0.0 0.0 0.0 0.19857029388403494 0.0 40 0.0 0.0 0.0 0.2515223722531109 0.0 41 0.0 0.0 0.0 0.3309504898067249 0.0 42 0.0 0.0 0.0 0.3839025681758009 0.0 43 0.0 0.0 0.0 0.5030447445062218 0.0 44 0.0 0.0 0.0 0.5692348424675668 0.0 45 0.0 0.0 0.0 0.6221869208366428 0.0 46 0.0 0.0 0.0 0.6883770187979878 0.0 47 0.0 0.0 0.0 0.8075191951284088 0.0 48 0.0 0.0 0.0 0.8339952343129468 0.0 49 0.0 0.0 0.0 0.8869473126820228 0.0 50 0.0 0.0 0.0 1.0590415673815197 0.0 51 0.0 0.0 0.0 1.1384696849351337 0.0 52 0.0 0.0 0.0 1.2311358220810167 0.0 53 0.0 0.0 0.0 1.3635160180037067 0.0 54 0.0 0.0 0.0 1.4958962139263967 0.0 55 0.0 0.0 0.0 1.6018003706645485 0.0 56 0.0 0.0 0.0 1.7474185861795075 0.0 57 0.0 0.0 0.0 1.9195128408790045 0.0 58 0.0 0.0 0.0 1.9724649192480805 0.0 59 0.0 0.0 0.0 2.0651310563939633 0.0 60 0.0 0.0 0.0 2.2107492719089223 0.0 61 0.0 0.0 0.0 2.3034154090548054 0.0 62 0.0 0.0 0.0 2.3960815462006884 0.0 63 0.0 0.0 0.0 2.5019857029388404 0.0 64 0.0 0.0 0.0 2.6078898596769924 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAAAATC 20 0.0066888626 52.5 66 AAAAAAT 20 0.0066888626 52.5 65 >>END_MODULE