##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781184_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 89864 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.602443692691175 34.0 34.0 34.0 31.0 34.0 2 32.85479168521321 34.0 34.0 34.0 31.0 34.0 3 32.96660509213923 34.0 34.0 34.0 31.0 34.0 4 33.11705466037568 34.0 34.0 34.0 31.0 34.0 5 33.053859164960386 34.0 34.0 34.0 31.0 34.0 6 36.1910331167097 38.0 37.0 38.0 34.0 38.0 7 36.079297605270185 38.0 36.0 38.0 32.0 38.0 8 35.71558132288792 38.0 36.0 38.0 31.0 38.0 9 35.88058621917564 38.0 36.0 38.0 31.0 38.0 10-11 35.75948655746461 38.0 36.0 38.0 31.0 38.0 12-13 35.68591983441645 38.0 36.0 38.0 31.0 38.0 14-15 35.73273502181074 38.0 36.0 38.0 31.0 38.0 16-17 35.64213144306953 38.0 36.0 38.0 31.0 38.0 18-19 35.6310480281314 38.0 36.0 38.0 31.0 38.0 20-21 35.56241097658685 38.0 36.0 38.0 31.0 38.0 22-23 35.61394440487848 38.0 36.0 38.0 31.0 38.0 24-25 35.64723359743613 38.0 36.0 38.0 31.0 38.0 26-27 35.35425754473427 38.0 36.0 38.0 30.5 38.0 28-29 35.30183944627437 38.0 36.0 38.0 31.0 38.0 30-31 35.323588978901455 38.0 36.0 38.0 31.0 38.0 32-33 35.27021944271343 38.0 36.0 38.0 30.5 38.0 34-35 35.273824890946315 38.0 36.0 38.0 29.5 38.0 36-37 35.22409418677112 37.5 35.5 38.0 28.5 38.0 38-39 35.15877882133001 38.0 35.0 38.0 27.0 38.0 40-41 35.200436214724476 37.5 35.0 38.0 28.5 38.0 42-43 35.19298606783584 37.0 35.0 38.0 27.0 38.0 44-45 35.134141591738626 37.0 35.0 38.0 27.0 38.0 46-47 35.181780245704616 37.0 35.0 38.0 28.0 38.0 48-49 35.14548094898959 37.0 35.0 38.0 27.0 38.0 50-51 35.02992855871094 37.0 35.0 38.0 27.0 38.0 52-53 35.047905724205464 37.0 35.0 38.0 27.0 38.0 54-55 35.07396732840738 37.0 35.0 38.0 27.0 38.0 56-57 35.00753360633847 37.0 35.0 38.0 27.0 38.0 58-59 34.98686348259592 37.0 35.0 38.0 27.0 38.0 60-61 34.975958114484115 37.0 35.0 38.0 27.0 38.0 62-63 34.94976853912579 37.0 35.0 38.0 27.0 38.0 64-65 34.89082391168877 37.0 35.0 38.0 27.0 38.0 66-67 34.86669300275973 37.0 35.0 38.0 27.0 38.0 68-69 34.77428113593875 37.0 34.5 38.0 27.0 38.0 70-71 34.71188128727855 37.0 34.5 38.0 27.0 38.0 72-73 34.62705310246595 37.0 34.0 38.0 27.0 38.0 74-75 34.653871405679695 37.0 34.5 38.0 27.0 38.0 76 33.68845143772812 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 11.0 22 26.0 23 67.0 24 156.0 25 282.0 26 497.0 27 825.0 28 1322.0 29 1997.0 30 2966.0 31 4060.0 32 5405.0 33 7234.0 34 9191.0 35 11900.0 36 17199.0 37 26724.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.49056351820529 20.014688863171017 9.294044333659752 26.200703284963943 2 22.768850707736135 20.58110032938663 32.16861034452061 24.481438618356627 3 19.85889789014511 23.096011751090536 29.733819994658596 27.31127036410576 4 13.915472269206802 17.612169500578652 37.34977299029645 31.1225852399181 5 13.339045669010948 35.54927445918277 36.51406569927891 14.597614172527374 6 30.46492477521588 39.165850618712724 17.206000178046825 13.16322442802457 7 28.673328585417966 30.128861390545715 21.584839312739252 19.61297071129707 8 25.166918899670616 36.27036410575982 18.658194605181162 19.90452238938841 9 24.325647645330722 15.082791774236624 20.596679426689217 39.994881153743435 10-11 24.636116798718064 25.708292530935633 28.067412979613636 21.588177690732664 12-13 24.986646488026352 23.235667230481617 26.995237247396066 24.78244903409597 14-15 22.905167809133804 24.261662067123655 23.74922104513487 29.083949078607674 16-17 23.77704086174664 27.983953529778333 24.85422416095433 23.384781447520698 18-19 23.45321819638565 27.05644084394196 25.99205466037568 23.498286299296716 20-21 22.986958069972403 26.913446986557467 25.80733107807353 24.2922638653966 22-23 22.714323867177065 27.263976675865752 26.478345054749397 23.54335440220778 24-25 23.577294578474138 27.325180272411643 26.18957535831924 22.90794979079498 26-27 22.690955221223184 27.825380575091245 26.634136027775305 22.849528175910265 28-29 23.47324846434612 26.594631888186594 27.09928336152408 22.832836285943202 30-31 23.033695361880174 27.782538057509125 26.846679426689217 22.33708715392148 32-33 22.254740496750646 27.86822309267337 27.12209561114573 22.75494079943025 34-35 23.752559423128282 26.27247841182231 27.077027508234664 22.89793465681474 36-37 23.00754473426511 27.0241698566723 26.064942579898513 23.90334282916407 38-39 22.236935814119114 27.20166028665539 27.411978100240365 23.14942579898513 40-41 22.250845722424998 26.377637318614795 28.105247930205646 23.266269028754564 42-43 23.289637674708448 26.313095344075492 27.68683788836464 22.71042909285142 44-45 22.209115997507347 26.96240986379418 27.567212676934034 23.261261461764445 46-47 22.906280601798272 26.114461853467464 27.203885871984333 23.775371672749934 48-49 22.698744769874477 25.841827650672126 27.6940710406837 23.765356538769698 50-51 22.08114484109321 25.822910175376123 28.07965369892282 24.016291284607853 52-53 21.806285052968928 25.810113059734714 29.191889967061336 23.191711920235022 54-55 21.279377726342027 26.13449212142794 28.69168966438173 23.894440487848303 56-57 21.793487937327516 26.13671770675688 27.955020920502093 24.114773435413515 58-59 21.387318614795692 25.98203952639544 28.976564586486248 23.65407727232262 60-61 21.82297694293599 26.902875456244992 27.503783495059203 23.770364105759814 62-63 20.612814920324045 27.370804771654946 27.928313896554798 24.088066411466215 64-65 20.938863171013978 27.795335173150537 27.105960117510907 24.15984153832458 66-67 21.012307486869048 27.38026350930295 26.998019229057242 24.609409774770764 68-69 20.891013086441735 28.059623430962343 26.449968841805394 24.59939464079053 70-71 21.296626012641326 27.331300632066235 26.67697854535743 24.695094809935014 72-73 20.93830677468174 26.747084483219087 26.896755096590404 25.41785364550877 74-75 21.006187127214456 26.581278376212946 26.872273657972045 25.540260838600553 76 21.65717083592985 26.688106472002136 26.488916585061872 25.165806107006144 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 0.0 11 0.0 12 0.0 13 1.0 14 4.0 15 7.0 16 21.0 17 34.0 18 37.0 19 58.5 20 99.5 21 122.0 22 153.0 23 222.5 24 311.5 25 362.0 26 429.0 27 586.0 28 761.5 29 847.0 30 944.0 31 1161.0 32 1514.5 33 1748.0 34 1960.5 35 2366.0 36 2748.5 37 2938.0 38 3275.0 39 3957.5 40 4673.5 41 5226.5 42 5409.0 43 5590.0 44 5781.0 45 5746.5 46 5702.0 47 5569.0 48 5053.5 49 4432.5 50 4194.0 51 3855.0 52 3266.0 53 2783.0 54 2550.0 55 2470.0 56 2175.0 57 1725.5 58 1491.0 59 1321.0 60 1087.5 61 965.0 62 906.0 63 813.5 64 686.5 65 629.0 66 607.0 67 608.0 68 602.0 69 582.0 70 570.0 71 572.0 72 538.0 73 478.0 74 424.0 75 396.0 76 378.5 77 331.0 78 269.5 79 238.0 80 199.0 81 139.0 82 102.0 83 86.0 84 71.5 85 49.0 86 26.0 87 11.0 88 13.0 89 9.5 90 2.5 91 2.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 89864.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.69456066945606 #Duplication Level Percentage of deduplicated Percentage of total 1 72.64465729763681 41.185569304727146 2 15.011384156394755 17.02127659574468 3 4.685169192117454 7.968708270275082 4 2.3396404176807724 5.305795424196564 5 1.2797362016173355 3.6277040861746643 6 0.8773651566302897 2.984509926110567 7 0.6909005260265368 2.7419211252559426 8 0.4691057548873361 2.127659574468085 9 0.382743189134019 1.9529511261461765 >10 1.6075213943628799 13.686236980325825 >50 0.009813927926513307 0.40283094453841356 >100 0.0 0.0 >500 0.0019627855853026617 0.9948366420368556 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGT 894 0.9948366420368556 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG 99 0.11016647378260483 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0011127926644707558 0.0 10 0.0 0.0 0.0 0.0011127926644707558 0.0 11 0.0 0.0 0.0 0.0011127926644707558 0.0 12 0.0 0.0 0.0 0.0011127926644707558 0.0 13 0.0 0.0 0.0 0.0011127926644707558 0.0 14 0.0 0.0 0.0 0.0011127926644707558 0.0 15 0.0 0.0 0.0 0.0011127926644707558 0.0 16 0.0 0.0 0.0 0.0011127926644707558 0.0 17 0.0 0.0 0.0 0.0011127926644707558 0.0 18 0.0 0.0 0.0 0.0011127926644707558 0.0 19 0.0 0.0 0.0 0.0022255853289415116 0.0 20 0.0 0.0 0.0 0.0022255853289415116 0.0 21 0.0 0.0 0.0 0.0022255853289415116 0.0 22 0.0 0.0 0.0 0.0022255853289415116 0.0 23 0.0 0.0 0.0 0.0033383779934122674 0.0 24 0.0 0.0 0.0 0.0033383779934122674 0.0 25 0.0 0.0 0.0 0.0033383779934122674 0.0 26 0.0 0.0 0.0 0.0033383779934122674 0.0 27 0.0 0.0 0.0 0.005563963322353779 0.0 28 0.0 0.0 0.0 0.011127926644707558 0.0 29 0.0 0.0 0.0 0.015579097302590581 0.0 30 0.0 0.0 0.0 0.020030267960473604 0.0 31 0.0 0.0 0.0 0.02893260927623965 0.0 32 0.0 0.0 0.0 0.03672215792753494 0.0 33 0.0 0.0 0.0 0.06342918187483308 0.0 34 0.0 0.0 0.0 0.09124899848660198 0.0 35 0.0 0.0 0.0 0.13464791240096144 0.0 36 0.0 0.0 0.0 0.20364105759814832 0.0 37 0.0 0.0 0.0 0.3071307753939286 0.0 38 0.0 0.0 0.0 0.43176355381465326 0.0 39 0.0 0.0 0.0 0.5541707469064364 0.0 40 0.0 0.0 0.0 0.7578118045045847 0.0 41 0.0 0.0 0.0 0.9425353868067302 0.0 42 0.0 0.0 0.0 1.1862369803258257 0.0 43 0.0 0.0 0.0 1.4566455977922192 0.0 44 0.0 0.0 0.0 1.7693403365085016 0.0 45 0.0 0.0 0.0 2.174396866375857 0.0 46 0.0 0.0 0.0 2.6373186147956913 0.0 47 0.0 0.0 0.0 3.116932253182587 0.0 48 0.0 0.0 0.0 3.5987714768984245 0.0 49 0.0 0.0 0.0 3.9904744947921302 0.0 50 0.0 0.0 0.0 4.391079854001602 0.0 51 0.0 0.0 0.0 4.816166651829431 0.0 52 0.0 0.0 0.0 5.198967328407371 0.0 53 0.0 0.0 0.0 5.5617377370248375 0.0 54 0.0 0.0 0.0 6.000178046826315 0.0 55 0.0 0.0 0.0 6.489806819193448 0.0 56 0.0 0.0 0.0 6.9338110923172795 0.0 57 0.0 0.0 0.0 7.476853912579008 0.0 58 0.0 0.0 0.0 7.95090358764355 0.0 59 0.0 0.0 0.0 8.486156859253985 0.0 60 0.0 0.0 0.0 9.006943826226298 0.0 61 0.0 0.0 0.0 9.429805038725185 0.0 62 0.0 0.0 0.0 9.904967506454197 0.0 63 0.0 0.0 0.0 10.372340425531915 0.0 64 0.0 0.0 0.0 10.83526217395175 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGT 15 0.002218217 70.00001 41 GTAAGGT 15 0.002218217 70.00001 21 TATGTCG 15 0.002218217 70.00001 43 CCTCGTA 25 2.379153E-4 55.999996 38 CTCGTAT 135 0.0 54.444443 39 TCTCGTA 105 0.0 53.333332 38 CTAGAAC 20 0.006931303 52.5 24 CGAAATA 20 0.006931303 52.5 56 GCGAAAT 20 0.006931303 52.5 55 GTCTAAC 20 0.006931303 52.5 1 CTAAAGT 20 0.006931303 52.5 16 CAAGGTT 20 0.006931303 52.5 6 GATTGGC 20 0.006931303 52.5 41 GGCGAAA 20 0.006931303 52.5 54 CGATAGC 20 0.006931303 52.5 50 TCGTATG 150 0.0 51.333332 40 CGTATGC 125 0.0 50.4 41 TATGCCG 125 0.0 50.4 43 ATCTCGT 105 0.0 49.999996 37 CATCTCG 110 0.0 47.727272 36 >>END_MODULE