##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781183_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 215887 Sequences flagged as poor quality 0 Sequence length 76 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.92407138919898 34.0 34.0 34.0 32.0 34.0 2 33.05747914418191 34.0 34.0 34.0 33.0 34.0 3 33.04298545072191 34.0 34.0 34.0 33.0 34.0 4 33.094447558213325 34.0 34.0 34.0 33.0 34.0 5 33.077619310102044 34.0 34.0 34.0 33.0 34.0 6 36.48058011830263 38.0 37.0 38.0 34.0 38.0 7 36.384603982639064 38.0 37.0 38.0 34.0 38.0 8 36.459416268696124 38.0 37.0 38.0 34.0 38.0 9 36.5596399968502 38.0 37.0 38.0 34.0 38.0 10-11 36.50169764738034 38.0 37.0 38.0 34.0 38.0 12-13 36.45505287488362 38.0 37.0 38.0 34.0 38.0 14-15 36.43406735931298 38.0 37.0 38.0 34.0 38.0 16-17 36.447183017041326 38.0 37.0 38.0 34.0 38.0 18-19 36.4741184045357 38.0 37.0 38.0 34.0 38.0 20-21 36.44929754918083 38.0 37.0 38.0 34.0 38.0 22-23 36.478766669600304 38.0 37.0 38.0 34.0 38.0 24-25 36.4927299930056 38.0 37.0 38.0 34.0 38.0 26-27 36.46652415383974 38.0 37.0 38.0 34.0 38.0 28-29 36.53337857304979 38.0 37.0 38.0 34.0 38.0 30-31 36.58633451759485 38.0 37.0 38.0 34.0 38.0 32-33 36.57352457535656 38.0 37.0 38.0 34.0 38.0 34-35 36.57682028098033 38.0 37.0 38.0 34.0 38.0 36-37 36.52201151528346 38.0 37.0 38.0 34.0 38.0 38-39 36.505113786378985 38.0 37.0 38.0 34.0 38.0 40-41 36.491553451574205 38.0 37.0 38.0 34.0 38.0 42-43 36.56414003622265 38.0 37.0 38.0 34.0 38.0 44-45 36.55469528040132 38.0 37.0 38.0 34.0 38.0 46-47 36.52759082297683 38.0 37.0 38.0 34.0 38.0 48-49 36.50240866749735 38.0 37.0 38.0 34.0 38.0 50-51 36.44803763079759 38.0 37.0 38.0 34.0 38.0 52-53 36.48012617712044 38.0 37.0 38.0 34.0 38.0 54-55 36.46563016763399 38.0 37.0 38.0 34.0 38.0 56-57 36.40090880877496 38.0 37.0 38.0 34.0 38.0 58-59 36.41570821772501 38.0 37.0 38.0 34.0 38.0 60-61 36.40313682621001 38.0 37.0 38.0 34.0 38.0 62-63 36.38359882716421 38.0 37.0 38.0 34.0 38.0 64-65 36.39237656737089 38.0 37.0 38.0 34.0 38.0 66-67 36.31647806491359 38.0 37.0 38.0 34.0 38.0 68-69 36.06570103804305 38.0 37.0 38.0 33.0 38.0 70-71 36.25476754042624 38.0 37.0 38.0 34.0 38.0 72-73 36.26636851686299 38.0 37.0 38.0 34.0 38.0 74-75 36.29117084400636 38.0 37.0 38.0 34.0 38.0 76 35.38393696702442 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 33.0 15 81.0 16 143.0 17 249.0 18 367.0 19 402.0 20 432.0 21 444.0 22 488.0 23 600.0 24 750.0 25 902.0 26 1019.0 27 1343.0 28 1628.0 29 1977.0 30 2494.0 31 3090.0 32 4111.0 33 5624.0 34 8169.0 35 13282.0 36 28956.0 37 139299.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.41194235873397 21.827159578853752 11.056247018115958 25.704651044296323 2 19.245253303811715 22.371888997484795 35.54174174452376 22.841115954179735 3 18.47725893638802 23.495161820767347 31.279789890081382 26.747789352763252 4 12.712205922542813 16.91208826839967 38.30800372417051 32.067702084887 5 13.245355208975065 34.6088462945893 36.26665802016796 15.879140476267677 6 28.521402400329805 38.40898247694396 18.833463802822774 14.236151319903467 7 25.74911875193967 31.195949732962152 23.84858745547439 19.206344059623785 8 22.218104841884877 36.575152741943704 22.34733911722336 18.85940329894806 9 22.484911087744976 16.356705128145745 23.698045736890133 37.460338047219146 10-11 22.537948093215434 26.298711826094205 29.61804091955514 21.545299161135222 12-13 22.726472645411718 24.372009430859663 29.498997160551582 23.40252076317703 14-15 20.548944586751404 26.420303214181494 26.485383557138686 26.54536864192842 16-17 20.141323933354023 30.23132472080301 27.458346264480955 22.16900508136201 18-19 19.47963517951521 29.68937453389968 29.260446437256526 21.570543849328583 20-21 20.427816403952068 29.355171918642625 28.562396068313518 21.654615609091792 22-23 20.061652623826355 29.001283078647628 28.721275482080905 22.215788815445116 24-25 20.324058419450918 29.052467262966275 28.52533964527739 22.09813467230542 26-27 19.60516381255008 29.01031558176268 29.222926808932453 22.161593796754783 28-29 19.421734518521262 29.051540852390374 29.713692811517134 21.81303181757123 30-31 20.182317601337736 29.502934405499172 28.86371110812601 21.45103688503708 32-33 19.692941214616905 29.21111507408969 29.124264082598767 21.97167962869464 34-35 19.65333716249705 28.7347084354315 29.63263188612561 21.979322515945842 36-37 20.017184916183 29.606460787356347 28.997809038987988 21.37854525747266 38-39 19.82078587409154 29.491817478588334 29.35308749484684 21.334309152473285 40-41 19.72397596890966 29.14279229411683 29.488111836284723 21.645119900688787 42-43 19.779329000819875 28.840319241084455 29.668298693297885 21.712053064797786 44-45 20.040808385868534 28.80974769207965 29.175448266917414 21.9739956551344 46-47 19.863632363227058 29.24377104689027 29.27063695359146 21.62195963629121 48-49 19.503490251844717 28.78357659331039 29.90684941659294 21.806083738251957 50-51 19.82634433754696 28.840319241084455 29.51683056413772 21.816505857230865 52-53 19.4921417222899 28.50820104962318 29.964286872298935 22.035370355787983 54-55 19.704521346815696 28.741424912106794 29.63378989934549 21.92026384173202 56-57 19.268413568209294 28.834297572341082 29.857518053426098 22.03977080602352 58-59 19.26146548889002 28.30415912028052 30.128029941589812 22.306345449239647 60-61 19.27651966074845 28.688619509280315 29.679647222852694 22.355213607118536 62-63 19.179246550278616 28.43478301148286 29.924451217535097 22.461519220703423 64-65 19.274435236952662 28.214760499705864 29.84593792122731 22.664866342114163 66-67 19.143811345750322 28.434319806194907 29.713924414161113 22.70794443389366 68-69 19.32631422920324 27.912982254605417 29.677099593768965 23.083603922422377 70-71 19.80804772867287 28.22309819488899 29.258593616104722 22.710260460333416 72-73 19.65264235456512 27.862956083506653 29.675709977905107 22.808691584023123 74-75 19.88216057474512 27.818951581151254 29.162246916210794 23.13664092789283 76 20.012321260659512 28.053101854210766 28.74513055441041 23.189446330719313 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 1.0 7 1.5 8 2.0 9 1.5 10 8.5 11 16.0 12 16.0 13 24.5 14 45.0 15 84.0 16 179.0 17 247.0 18 332.5 19 530.0 20 784.0 21 926.0 22 1162.0 23 1676.5 24 2313.5 25 2672.0 26 3043.5 27 3871.5 28 4757.5 29 5187.0 30 5598.5 31 6529.0 32 7456.5 33 7865.0 34 8297.0 35 9104.5 36 9842.0 37 10204.0 38 10383.5 39 10794.5 40 11074.0 41 11000.5 42 10879.0 43 10718.5 44 10312.0 45 9893.0 46 9720.0 47 9351.5 48 8472.0 49 7657.5 50 7354.0 51 6871.5 52 6032.0 53 5517.0 54 5359.0 55 5198.0 56 4861.5 57 4412.0 58 4138.0 59 3796.5 60 3091.0 61 2425.0 62 2123.0 63 1855.5 64 1420.5 65 1104.5 66 859.5 67 763.0 68 670.0 69 517.5 70 407.5 71 357.0 72 326.5 73 261.0 74 197.5 75 169.0 76 154.5 77 138.5 78 104.0 79 71.0 80 69.5 81 74.0 82 68.0 83 56.0 84 43.5 85 27.5 86 21.0 87 18.0 88 14.5 89 7.0 90 6.0 91 6.5 92 4.0 93 3.0 94 1.0 95 0.5 96 1.0 97 1.0 98 1.0 99 2.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 215887.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.83693877359723 #Duplication Level Percentage of deduplicated Percentage of total 1 86.47509429184925 72.49807185586812 2 10.724832410555587 17.982742363216794 3 1.7943178091363814 4.512903369148257 4 0.4639030100733089 1.5556883300961382 5 0.17999603683259519 0.7545158359712216 6 0.1114053221081838 0.5603928701182009 7 0.07951220686102753 0.4666242012853093 8 0.04544479553195428 0.3047962032472877 9 0.033752721572938564 0.2546752366757452 >10 0.09118890140380516 1.0827244754495646 >50 5.524940749792859E-4 0.026865258923351898 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 4.632052879515673E-4 0.0 21 0.0 0.0 0.0 0.001852821151806269 0.0 22 0.0 0.0 0.0 0.0032424370156609707 0.0 23 0.0 0.0 0.0 0.0032424370156609707 0.0 24 0.0 0.0 0.0 0.003705642303612538 0.0 25 0.0 0.0 0.0 0.003705642303612538 0.0 26 0.0 0.0 0.0 0.004168847591564106 0.0 27 0.0 0.0 0.0 0.004632052879515672 0.0 28 0.0 0.0 0.0 0.006948079319273509 0.0 29 0.0 0.0 0.0 0.011580132198789181 0.0 30 0.0 0.0 0.0 0.016675390366256423 0.0 31 0.0 0.0 0.0 0.018991416806014256 0.0 32 0.0 0.0 0.0 0.022697059109626796 0.0 33 0.0 0.0 0.0 0.027792317277094036 0.0 34 0.0 0.0 0.0 0.03659321774817381 0.0 35 0.0 0.0 0.0 0.05326860811443023 0.0 36 0.0 0.0 0.0 0.08476656769513681 0.0 37 0.0 0.0 0.0 0.1329399176420998 0.0 38 0.0 0.0 0.0 0.21446404832157565 0.0 39 0.0 0.0 0.0 0.30062023188056713 0.0 40 0.0 0.0 0.0 0.41086309041304014 0.0 41 0.0 0.0 0.0 0.5262012071129804 0.0 42 0.0 0.0 0.0 0.6841542103044649 0.0 43 0.0 0.0 0.0 0.8560033721344963 0.0 44 0.0 0.0 0.0 1.0639825464247499 0.0 45 0.0 0.0 0.0 1.3229143023896761 0.0 46 0.0 0.0 0.0 1.6198288919666306 0.0 47 0.0 0.0 0.0 1.9223019449990042 0.0 48 0.0 0.0 0.0 2.2358919249422153 0.0 49 0.0 0.0 0.0 2.551797931325184 0.0 50 0.0 0.0 0.0 2.8524181632057513 0.0 51 0.0 0.0 0.0 3.142847878751384 0.0 52 0.0 0.0 0.0 3.4388360577524355 0.0 53 0.0 0.0 0.0 3.7519628324076946 0.0 54 0.0 0.0 0.0 4.07574332868584 0.0 55 0.0 0.0 0.0 4.420368062921806 0.0 56 0.0 0.0 0.0 4.787226650979448 0.0 57 0.0 0.0 0.0 5.155474854900944 0.0 58 0.0 0.0 0.0 5.507510873744135 0.0 59 0.0 0.0 0.0 5.863252534890938 0.0 60 0.0 0.0 0.0 6.258366645513625 0.0 61 0.0 0.0 0.0 6.588632015823093 0.0 62 0.0 0.0 0.0 6.954100988016879 0.0 63 0.0 0.0 0.0 7.2894616164938135 0.0 64 0.0 0.0 0.0 7.649372125232182 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTGCCG 50 0.007197606 27.999998 64 ATCAGGT 50 0.007197606 27.999998 12 AGGGCCG 50 0.007197606 27.999998 69 TGCCGCT 50 0.007197606 27.999998 66 ACGAGGG 90 6.1451665E-6 27.222223 69 CGAGGGC 110 1.0105105E-6 25.454548 70 GACCCAT 70 0.0012233292 25.0 6 GGTCTGG 70 0.0012233292 25.0 1 GGTTAGA 70 0.0012233292 25.0 1 ATCCATA 105 2.0306967E-5 23.333334 1 CTAGACT 80 0.0026602023 21.875002 4 CTACACC 80 0.0026602023 21.875002 4 CGACGAG 135 5.9874E-6 20.74074 69 GTCTGAG 85 0.0037809452 20.588236 1 ATAACAC 105 5.4468296E-4 20.000002 3 GTAACTT 105 5.4468296E-4 20.000002 38 CTGCCGA 380 0.0 19.342104 70 GACGAGG 145 1.1103057E-5 19.310345 70 GATCTAG 95 0.0071921153 18.421051 1 ACACCAT 160 2.591555E-5 17.500002 6 >>END_MODULE