##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781182_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 424687 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.44020184276891 34.0 33.0 34.0 23.0 34.0 2 31.612790125433555 34.0 33.0 34.0 24.0 34.0 3 31.635762337910037 34.0 34.0 34.0 23.0 34.0 4 31.8135968372001 34.0 34.0 34.0 23.0 34.0 5 31.834190827597737 34.0 34.0 34.0 27.0 34.0 6 34.66419975181722 38.0 35.0 38.0 27.0 38.0 7 34.54573839086198 37.0 34.0 38.0 26.0 38.0 8 34.285730432059374 37.0 34.0 38.0 24.0 38.0 9 34.635246664013735 38.0 35.0 38.0 26.0 38.0 10-11 34.535709828650276 38.0 34.0 38.0 26.0 38.0 12-13 34.51273997084912 38.0 34.0 38.0 26.0 38.0 14-15 34.41076369184835 37.5 34.0 38.0 25.0 38.0 16-17 34.39297882911414 37.5 34.0 38.0 25.0 38.0 18-19 34.454619519787514 37.5 34.0 38.0 25.5 38.0 20-21 34.367628394558814 37.0 34.0 38.0 25.0 38.0 22-23 34.44505365127729 37.5 34.0 38.0 25.5 38.0 24-25 34.429384464323135 37.5 34.0 38.0 25.5 38.0 26-27 34.35962132111414 37.0 34.0 38.0 25.0 38.0 28-29 34.43472369062392 37.0 34.0 38.0 25.5 38.0 30-31 34.509418701302366 38.0 34.0 38.0 26.0 38.0 32-33 34.46738186005223 37.5 34.0 38.0 25.5 38.0 34-35 34.48979836915187 38.0 34.0 38.0 25.5 38.0 36-37 34.3474452950055 37.0 34.0 38.0 24.5 38.0 38-39 34.35050519559111 37.0 34.0 38.0 25.0 38.0 40-41 34.34506118623834 37.0 34.0 38.0 24.5 38.0 42-43 34.41636899646092 37.0 34.0 38.0 25.0 38.0 44-45 34.443108689458356 37.0 34.0 38.0 25.0 38.0 46-47 34.43264451231142 37.0 34.0 38.0 25.0 38.0 48-49 34.405282007690374 37.0 34.0 38.0 25.0 38.0 50-51 34.29022315258061 37.0 34.0 38.0 24.5 38.0 52-53 34.377269612679456 37.0 34.0 38.0 25.0 38.0 54-55 34.34159157214607 37.0 34.0 38.0 25.0 38.0 56-57 34.32146851681355 37.0 34.0 38.0 24.5 38.0 58-59 34.31913267889057 37.0 34.0 38.0 24.5 38.0 60-61 34.292171646412534 37.0 34.0 38.0 24.0 38.0 62-63 34.261352478413514 37.0 34.0 38.0 24.0 38.0 64-65 34.293225363620735 37.0 34.0 38.0 24.0 38.0 66-67 34.189364167021836 37.0 34.0 38.0 24.0 38.0 68-69 33.97078083388472 37.0 34.0 38.0 23.5 38.0 70-71 34.13371259303911 37.0 34.0 38.0 24.0 38.0 72-73 34.10256141581918 37.0 34.0 38.0 24.0 38.0 74-75 34.101043827571836 37.0 34.0 38.0 24.0 38.0 76 32.71324057482334 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 21.0 14 96.0 15 301.0 16 677.0 17 1260.0 18 2033.0 19 2235.0 20 2522.0 21 2880.0 22 3259.0 23 3860.0 24 4737.0 25 5540.0 26 6503.0 27 7991.0 28 9463.0 29 11235.0 30 13924.0 31 16550.0 32 20436.0 33 25323.0 34 32206.0 35 43192.0 36 65552.0 37 142889.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.6721938745476 19.09194300743842 10.34903352351261 25.886829594501364 2 22.406854930807864 19.953754176605358 32.748588960811134 24.890801931775638 3 19.75501957912533 22.206001125534804 28.99806210220704 29.040917193132827 4 14.149244031486718 16.06971722704015 37.019028131306115 32.76201061016702 5 14.030332927544286 34.333285454935044 35.70182275416954 15.934558863351128 6 30.905584583469707 36.67077165065095 17.978887981030738 14.444755784848606 7 29.750145401201355 28.729864582622028 22.492800580192 19.02718943598462 8 26.06201743872546 34.17669954578313 20.032635800012716 19.72864721547869 9 24.903752646066398 16.494736123309636 21.90012880074031 36.70138242988366 10-11 25.751671230812338 24.5603232498287 27.405830647041235 22.282174872317732 12-13 25.407417698210683 22.91605346996729 27.001061958571842 24.675466873250183 14-15 23.324118703892513 24.205355944495594 24.169447145780303 28.301078205831587 16-17 23.579718710485604 27.326360354802475 25.435438334585236 23.658482600126682 18-19 23.154817547982397 26.67729410130284 26.815395809148857 23.352492541565905 20-21 23.078290599900633 26.851657809162983 26.68777240650173 23.382279184434655 22-23 23.53333160657143 26.358353328451305 26.835646016948957 23.272669048028312 24-25 23.167768262273157 26.576749464900036 26.78702197147546 23.46846030135135 26-27 22.430637151596354 26.787610640306863 27.101371127442093 23.680381080654694 28-29 22.81621523616216 26.66457885454464 27.717000991318315 22.802204917974887 30-31 23.187429801241855 26.45183393887734 27.114675043031696 23.246061216849114 32-33 22.885913625799706 26.84871446500599 26.7816062182266 23.4837656909677 34-35 23.494832664997986 26.076380958211576 27.303755471676787 23.125030905113647 36-37 23.3542585480601 26.22790431541347 26.816926348110492 23.600910788415938 38-39 22.82304379460638 26.740870335093845 27.31847219246174 23.11761367783803 40-41 22.970917405053605 25.82549030226967 27.9338665888054 23.269725703871323 42-43 22.714846463395393 25.728359945088968 27.667670543247148 23.88912304826849 44-45 22.23366856061052 25.623459159333816 27.932100582311207 24.210771697744455 46-47 22.336214671040082 25.204562418910868 28.409393270808852 24.049829639240194 48-49 21.728943904569718 25.161707327985084 29.099901810038926 24.009446957406276 50-51 21.558112209697967 25.2153939254086 28.993588219088412 24.23290564580503 52-53 21.08435153418871 25.225519029308646 29.3214767581772 24.36865267832545 54-55 20.465778326155498 25.76179633471239 29.260843868543184 24.51158147058893 56-57 20.4061593814717 25.79850265667182 29.198312633701878 24.597025328154597 58-59 20.57569660372205 25.65569109376232 28.798958287956616 24.96965401455901 60-61 20.231982886199585 25.58640314679181 28.81961164294132 25.362002324067284 62-63 20.05599431109102 25.289390278935496 29.104797426804748 25.549817983168744 64-65 20.816791700220868 25.267138544713035 28.31586160127718 25.600208153788916 66-67 20.948560758490693 25.113525185107566 27.801278828686172 26.136635227715566 68-69 20.908531136570474 25.028756573982392 27.404161432401153 26.658550857045977 70-71 21.462680662889756 25.04285519183585 27.338904508271995 26.155559637002394 72-73 21.326109172423863 25.11137640515581 26.995827505498184 26.56668691692215 74-75 21.370023970651257 25.716411654728432 26.69890224777836 26.214662126841947 76 21.806648190314277 25.754025906137933 26.416867010292282 26.0224588932555 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 1.5 12 2.0 13 9.5 14 17.5 15 28.0 16 61.5 17 85.0 18 127.5 19 203.5 20 339.0 21 441.0 22 531.5 23 796.5 24 1252.5 25 1534.0 26 1837.0 27 2457.0 28 3168.5 29 3563.0 30 4148.5 31 5302.5 32 7032.0 33 8193.0 34 8678.0 35 10348.0 36 13037.5 37 14542.0 38 15820.0 39 18539.5 40 21521.5 41 24076.5 42 25091.0 43 25506.5 44 26367.5 45 26831.0 46 26849.0 47 26186.5 48 24122.0 49 21716.5 50 20713.0 51 19273.5 52 16285.0 53 13537.5 54 12339.0 55 11347.0 56 9550.0 57 7975.5 58 7206.0 59 6540.5 60 5428.5 61 4726.0 62 4470.0 63 4225.0 64 3756.5 65 3397.5 66 3199.5 67 3137.0 68 3143.5 69 3015.5 70 2840.5 71 2800.0 72 2702.5 73 2433.5 74 2170.0 75 2078.0 76 1956.0 77 1699.0 78 1444.5 79 1325.0 80 1168.5 81 894.0 82 639.0 83 502.0 84 455.5 85 314.5 86 188.5 87 157.0 88 123.5 89 69.5 90 43.5 91 29.0 92 20.0 93 17.0 94 12.0 95 7.0 96 4.0 97 2.5 98 1.5 99 4.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 3.532012988389096E-4 58-59 3.532012988389096E-4 60-61 1.1773376627963652E-4 62-63 2.3546753255927305E-4 64-65 2.3546753255927305E-4 66-67 3.532012988389096E-4 68-69 3.532012988389096E-4 70-71 2.3546753255927305E-4 72-73 2.3546753255927305E-4 74-75 2.3546753255927305E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 424687.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.51986364286357 #Duplication Level Percentage of deduplicated Percentage of total 1 71.59341072597795 35.45295936877954 2 15.030692943247074 14.886357300146935 3 5.728502413387184 8.510239751662448 4 2.2474616937618563 4.451759864705854 5 1.0817729112803613 2.6784623529573524 6 0.6340171317022222 1.883786514548011 7 0.4745464693213782 1.644963351709789 8 0.36104073813333537 1.4302950497505265 9 0.30809589671821774 1.373118011497073 >10 2.396451178036848 22.818499881011544 >50 0.13399410417166843 4.255609749120921 >100 0.01001379426189193 0.6139488041100488 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.3546753255927308E-4 0.0 2 0.0 0.0 0.0 2.3546753255927308E-4 0.0 3 0.0 0.0 0.0 2.3546753255927308E-4 0.0 4 0.0 0.0 0.0 7.064025976778192E-4 0.0 5 0.0 0.0 0.0 9.418701302370923E-4 0.0 6 0.0 0.0 0.0 0.0011773376627963654 0.0 7 0.0 0.0 0.0 0.0011773376627963654 0.0 8 0.0 0.0 0.0 0.0014128051953556384 0.0 9 0.0 0.0 0.0 0.0018837402604741846 0.0 10 0.0 0.0 0.0 0.0018837402604741846 0.0 11 0.0 0.0 0.0 0.002354675325592731 0.0 12 0.0 0.0 0.0 0.0025901428581520036 0.0 13 0.0 0.0 0.0 0.0025901428581520036 0.0 14 0.0 0.0 0.0 0.0025901428581520036 0.0 15 0.0 0.0 0.0 0.0025901428581520036 0.0 16 0.0 0.0 0.0 0.0025901428581520036 0.0 17 0.0 0.0 0.0 0.00306107792327055 0.0 18 0.0 0.0 0.0 0.003296545455829823 0.0 19 0.0 0.0 0.0 0.004002948053507642 0.0 20 0.0 0.0 0.0 0.004238415586066915 0.0 21 0.0 0.0 0.0 0.005180285716304007 0.0 22 0.0 0.0 0.0 0.0061221558465411 0.0 23 0.0 0.0 0.0 0.0061221558465411 0.0 24 0.0 0.0 0.0 0.006593090911659646 0.0 25 0.0 0.0 0.0 0.006828558444218919 0.0 26 0.0 0.0 0.0 0.007534961041896738 0.0 27 0.0 0.0 0.0 0.018837402604741846 0.0 28 0.0 0.0 0.0 0.027314233776875675 0.0 29 0.0 0.0 0.0 0.04073588313275424 0.0 30 0.0 0.0 0.0 0.056983142879344084 0.0 31 0.0 0.0 0.0 0.07582054548408593 0.0 32 0.0 0.0 0.0 0.09512888315394631 0.0 33 0.0 0.0 0.0 0.12621059745177035 0.0 34 0.0 0.0 0.0 0.18083906500552172 0.0 35 0.0 0.0 0.0 0.2632527014012673 0.0 36 0.0 0.0 0.0 0.40712336379498315 0.0 37 0.0 0.0 0.0 0.6557770781775755 0.0 38 0.0 0.0 0.0 0.9790740003814574 0.0 39 0.0 0.0 0.0 1.4015027537927933 0.0 40 0.0 0.0 0.0 1.890097883853285 0.0 41 0.0 0.0 0.0 2.4045944424952967 0.0 42 0.0 0.0 0.0 2.9932632738934792 0.0 43 0.0 0.0 0.0 3.742756430029645 0.0 44 0.0 0.0 0.0 4.5478199238498 0.0 45 0.0 0.0 0.0 5.48403883330547 0.0 46 0.0 0.0 0.0 6.5306920155314385 0.0 47 0.0 0.0 0.0 7.544615210731668 0.0 48 0.0 0.0 0.0 8.545823159173697 0.0 49 0.0 0.0 0.0 9.465323873817658 0.0 50 0.0 0.0 0.0 10.299114406610045 0.0 51 0.0 0.0 0.0 11.151271406942055 0.0 52 0.0 0.0 0.0 12.058292342360375 0.0 53 0.0 0.0 0.0 12.893495680348115 0.0 54 0.0 0.0 0.0 13.811348122264162 0.0 55 0.0 0.0 0.0 14.798428018752634 0.0 56 0.0 0.0 0.0 15.731114915219916 0.0 57 0.0 0.0 0.0 16.632013694791695 0.0 58 0.0 0.0 0.0 17.49782781201214 0.0 59 0.0 0.0 0.0 18.287585916215942 0.0 60 0.0 0.0 0.0 19.106541994457093 0.0 61 0.0 0.0 0.0 19.861450903842123 0.0 62 0.0 0.0 0.0 20.629075059985354 0.0 63 0.0 0.0 0.0 21.37503620313313 0.0 64 0.0 0.0 0.0 22.1360672683647 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTATG 50 3.4756868E-6 42.0 43 TAACCGG 80 1.4206307E-9 39.375 22 AACCGGC 95 7.619747E-9 33.157898 23 TACCGAA 55 2.9903007E-4 31.81818 11 TAAGGTA 45 0.0043054326 31.111109 6 TGGCGCT 85 3.951269E-6 28.82353 37 GGCGGTA 85 3.951269E-6 28.82353 41 GCGGTAT 75 5.5798948E-5 28.0 42 TCTGCCG 115 4.8892616E-8 27.391306 64 CGGCTTT 130 5.3896656E-9 26.923077 26 ACCGGCT 120 7.386734E-8 26.25 24 GTTCTAG 80 8.658043E-5 26.25 1 ATCGAAG 95 9.3796425E-6 25.789474 51 GGCTTTT 125 1.09679604E-7 25.199999 27 GTCCTTA 85 1.3071217E-4 24.705883 1 CGAACGA 75 0.0018311366 23.333334 14 TAGACGT 105 2.036704E-5 23.333334 4 CCCGCTA 150 2.4690962E-8 23.333334 17 TTGGCGG 90 1.9260874E-4 23.333332 39 CTTTTGG 135 2.3074244E-7 23.333332 36 >>END_MODULE