##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781182_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 382112 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.30792280797253 34.0 34.0 34.0 33.0 34.0 2 33.30944068754711 34.0 34.0 34.0 33.0 34.0 3 33.38610930826564 34.0 34.0 34.0 33.0 34.0 4 33.46184364793569 34.0 34.0 34.0 34.0 34.0 5 33.44977127125031 34.0 34.0 34.0 34.0 34.0 6 36.8710796834436 38.0 37.0 38.0 34.0 38.0 7 36.76625177958295 38.0 37.0 38.0 34.0 38.0 8 36.586189389498365 38.0 37.0 38.0 34.0 38.0 9 36.53645528012729 38.0 37.0 38.0 34.0 38.0 10-11 36.46118022988024 38.0 37.0 38.0 34.0 38.0 12-13 36.411574355162884 38.0 37.0 38.0 34.0 38.0 14-15 36.4264508835106 38.0 37.0 38.0 34.0 38.0 16-17 36.376852859894484 38.0 37.0 38.0 34.0 38.0 18-19 36.39247262582698 38.0 37.0 38.0 34.0 38.0 20-21 36.32113621137258 38.0 37.0 38.0 34.0 38.0 22-23 36.37547760865924 38.0 37.0 38.0 34.0 38.0 24-25 36.36524500669961 38.0 37.0 38.0 34.0 38.0 26-27 36.17711691859978 38.0 37.0 38.0 33.5 38.0 28-29 36.16421625073277 38.0 37.0 38.0 34.0 38.0 30-31 36.18780357591491 38.0 37.0 38.0 34.0 38.0 32-33 36.16032210451386 38.0 37.0 38.0 34.0 38.0 34-35 36.162686594506326 38.0 37.0 38.0 34.0 38.0 36-37 36.119578814588394 38.0 37.0 38.0 33.5 38.0 38-39 36.04781058956536 38.0 37.0 38.0 32.5 38.0 40-41 36.085734025625996 38.0 37.0 38.0 33.0 38.0 42-43 36.08868473117829 38.0 37.0 38.0 33.0 38.0 44-45 36.07096610417888 38.0 37.0 38.0 32.5 38.0 46-47 36.08684626496944 38.0 37.0 38.0 32.5 38.0 48-49 36.07405420400302 38.0 37.0 38.0 32.5 38.0 50-51 35.98877161669877 38.0 37.0 38.0 32.0 38.0 52-53 36.025304099321666 38.0 37.0 38.0 32.0 38.0 54-55 36.03191472657231 38.0 37.0 38.0 32.0 38.0 56-57 35.98572408089775 38.0 37.0 38.0 32.0 38.0 58-59 35.9912564902437 38.0 37.0 38.0 32.0 38.0 60-61 35.98304816388912 38.0 37.0 38.0 32.0 38.0 62-63 35.960150427099904 38.0 37.0 38.0 32.0 38.0 64-65 35.91578385394858 38.0 37.0 38.0 32.0 38.0 66-67 35.887297441587805 38.0 37.0 38.0 32.0 38.0 68-69 35.82340779666694 38.0 36.5 38.0 31.0 38.0 70-71 35.765910256678666 38.0 36.5 38.0 31.0 38.0 72-73 35.72604890712671 38.0 36.5 38.0 31.0 38.0 74-75 35.74650495142785 38.0 37.0 38.0 31.0 38.0 76 34.836563625324516 37.0 35.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 3.0 21 17.0 22 32.0 23 114.0 24 222.0 25 441.0 26 855.0 27 1525.0 28 2652.0 29 4330.0 30 7003.0 31 10361.0 32 15316.0 33 21265.0 34 30120.0 35 42503.0 36 66230.0 37 179120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.328688970772966 19.873230885185496 10.823266476844486 26.97481366719705 2 21.504689724478688 20.072125450129803 33.0489489992463 25.374235826145213 3 19.62775311950423 22.72004019763839 28.7557051335734 28.896501549283983 4 14.095343773553303 16.988474583368227 36.606806381375094 32.30937526170338 5 14.014215727326022 34.96697303408425 35.726697931496524 15.292113307093208 6 31.173582614521393 37.58636211372582 17.1625073276945 14.077547944058285 7 29.456023364877314 29.022904279373584 21.60675404070011 19.91431831504899 8 25.600085838706978 35.40061552633782 19.089690980654886 19.90960765430031 9 24.301513692320576 16.12982581023365 21.157671049325852 38.41098944811993 10-11 25.358664475337072 25.415584959383636 26.916584666275856 22.309165899003432 12-13 25.03075014655389 23.067843982916003 26.704735784272675 25.196670086257434 14-15 22.697402855707228 24.308579683443597 23.68886609161712 29.305151369232057 16-17 23.672117075621806 27.811741060212714 24.922404949334226 23.593736914831254 18-19 23.48460660748681 26.780237207939035 26.052701825642743 23.682454358931412 20-21 22.72867640901097 26.96146679507579 25.89136169500042 24.41849510091282 22-23 23.01040009211959 26.988945649443096 26.34934260112218 23.651311657315134 24-25 23.35009107277447 27.064577924796918 26.24296017921447 23.342370823214136 26-27 22.68693472071016 27.26203312117913 26.579510719370237 23.471521438740474 28-29 22.726844485386483 26.98632861569383 27.10121639728666 23.18561050163303 30-31 22.79554162130475 27.703788418055442 26.39775772548363 23.102912235156182 32-33 22.260096516204673 27.59779855121012 26.894209027719622 23.24789590486559 34-35 23.148056067331044 26.797771334059124 26.59913847248974 23.455034126120093 36-37 23.56638891215141 26.914098484214055 26.16981408592245 23.349698517712085 38-39 22.42915689640734 26.887404739971526 27.253266058119085 23.43017230550205 40-41 22.517220082070178 25.658838246378025 27.921002219244617 23.902939452307177 42-43 22.924168830081232 25.733423708232138 27.557627083158863 23.784780378527763 44-45 21.736689766351226 26.08868603969517 28.055910309019342 24.11871388493426 46-47 22.470244326270834 24.999869148312538 27.87939138263127 24.65049514278536 48-49 21.887300058621555 24.916254920023448 28.59096285905703 24.605482162297964 50-51 21.01595867180303 25.087278075538062 29.011781885939204 24.884981366719707 52-53 20.700475253328868 25.09761535884767 29.862710409513443 24.339198978310026 54-55 19.98667929821623 25.67467130056109 29.339827066409846 24.99882233481283 56-57 20.34521292186584 25.473552256929903 28.761593459509253 25.419641361695 58-59 19.777447449962317 25.33707394690562 29.358538857717107 25.526939745414957 60-61 20.096333012310527 26.01475483627837 28.22824198140859 25.660670170002515 62-63 19.195811699187672 26.128203249309102 28.164909764676327 26.511075286826895 64-65 19.491798216229796 26.363343731680764 27.35977933171426 26.78507872037518 66-67 19.761876099154176 26.370802277866172 26.620336445858804 27.24698517712084 68-69 19.933815216481033 26.732476342014905 25.901698978310023 27.432009463194035 70-71 19.97895904865589 26.81923101080311 25.60060924545683 27.601200695084167 72-73 19.813300812327274 26.48765283477096 25.43874570806465 28.260300644837116 74-75 19.897831002428607 27.1853540323256 25.061761996482705 27.855052968763083 76 20.268664684699775 27.62881040113893 24.689619797336906 27.412905116824387 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 2.5 12 5.0 13 4.5 14 5.5 15 20.5 16 62.5 17 91.0 18 127.5 19 209.5 20 312.0 21 369.0 22 492.0 23 812.0 24 1257.5 25 1506.0 26 1748.0 27 2211.5 28 2873.5 29 3314.0 30 3742.5 31 4655.5 32 6158.0 33 7176.0 34 7744.5 35 9340.5 36 11534.5 37 12701.0 38 14029.0 39 16960.0 40 19885.5 41 22040.5 42 22873.0 43 23057.0 44 23409.5 45 23574.0 46 23570.0 47 23123.0 48 21535.0 49 19616.0 50 18838.0 51 17565.0 52 14660.5 53 12186.5 54 11344.0 55 10278.5 56 8585.5 57 7131.5 58 6305.0 59 5700.0 60 4781.0 61 4179.5 62 3892.0 63 3597.0 64 3182.0 65 3057.5 66 3007.5 67 2962.0 68 2882.0 69 2712.5 70 2615.5 71 2608.0 72 2517.5 73 2278.5 74 2044.5 75 1959.0 76 1877.0 77 1647.5 78 1361.0 79 1222.0 80 1093.5 81 847.0 82 626.0 83 523.0 84 441.0 85 301.0 86 190.5 87 138.0 88 102.5 89 57.0 90 35.5 91 15.5 92 7.0 93 5.0 94 2.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 382112.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.24238982602762 #Duplication Level Percentage of deduplicated Percentage of total 1 61.94814687974453 26.168377694941846 2 20.381648519945394 17.219390841532242 3 7.73628708951833 9.803977651244937 4 3.0061879499660717 5.0795425309109445 5 1.3511765440269476 2.853846314828554 6 0.8442596390024003 2.1398126871072445 7 0.5857324989475801 1.7319918388021889 8 0.4658652507321627 1.5743409222262492 9 0.38074956506366353 1.4475394398158767 >10 3.097859050240656 25.13716009481069 >50 0.18529824559406483 5.0933524526198495 >100 0.016166961024985518 0.9348275684015287 >500 0.0 0.0 >1k 6.218061932686738E-4 0.8158399627578389 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT 3106 0.8128506825224018 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.6170337492672303E-4 0.0 2 0.0 0.0 0.0 2.6170337492672303E-4 0.0 3 0.0 0.0 0.0 2.6170337492672303E-4 0.0 4 0.0 0.0 0.0 7.851101247801692E-4 0.0 5 0.0 0.0 0.0 0.0010468134997068921 0.0 6 0.0 0.0 0.0 0.0013085168746336153 0.0 7 0.0 0.0 0.0 0.0013085168746336153 0.0 8 0.0 0.0 0.0 0.0015702202495603383 0.0 9 0.0 0.0 0.0 0.0020936269994137843 0.0 10 0.0 0.0 0.0 0.0020936269994137843 0.0 11 0.0 0.0 0.0 0.0023553303743405075 0.0 12 0.0 0.0 0.0 0.0023553303743405075 0.0 13 0.0 0.0 0.0 0.0023553303743405075 0.0 14 0.0 0.0 0.0 0.0026170337492672307 0.0 15 0.0 0.0 0.0 0.0026170337492672307 0.0 16 0.0 0.0 0.0 0.0026170337492672307 0.0 17 0.0 0.0 0.0 0.0028787371241939534 0.0 18 0.0 0.0 0.0 0.0031404404991206766 0.0 19 0.0 0.0 0.0 0.0036638472489741226 0.0 20 0.0 0.0 0.0 0.003925550623900846 0.0 21 0.0 0.0 0.0 0.004448957373754292 0.0 22 0.0 0.0 0.0 0.005234067498534461 0.0 23 0.0 0.0 0.0 0.005495770873461184 0.0 24 0.0 0.0 0.0 0.005757474248387907 0.0 25 0.0 0.0 0.0 0.0060191776233146305 0.0 26 0.0 0.0 0.0 0.007065991123021522 0.0 27 0.0 0.0 0.0 0.019366049744577507 0.0 28 0.0 0.0 0.0 0.028525667867012813 0.0 29 0.0 0.0 0.0 0.04291935348798258 0.0 30 0.0 0.0 0.0 0.0612385897328532 0.0 31 0.0 0.0 0.0 0.08086634285235743 0.0 32 0.0 0.0 0.0 0.10127920609664182 0.0 33 0.0 0.0 0.0 0.1373942718365296 0.0 34 0.0 0.0 0.0 0.1986328615693828 0.0 35 0.0 0.0 0.0 0.289182229294029 0.0 36 0.0 0.0 0.0 0.4462042542500628 0.0 37 0.0 0.0 0.0 0.7128799933003936 0.0 38 0.0 0.0 0.0 1.0520475672054266 0.0 39 0.0 0.0 0.0 1.4972050079557826 0.0 40 0.0 0.0 0.0 2.0104053261870867 0.0 41 0.0 0.0 0.0 2.5557951595343775 0.0 42 0.0 0.0 0.0 3.1823130391089522 0.0 43 0.0 0.0 0.0 3.969778494263462 0.0 44 0.0 0.0 0.0 4.81089314127795 0.0 45 0.0 0.0 0.0 5.80274893225023 0.0 46 0.0 0.0 0.0 6.90085629344276 0.0 47 0.0 0.0 0.0 7.956306004522235 0.0 48 0.0 0.0 0.0 8.991604555732351 0.0 49 0.0 0.0 0.0 9.945513357340257 0.0 50 0.0 0.0 0.0 10.797619546101666 0.0 51 0.0 0.0 0.0 11.683223766853697 0.0 52 0.0 0.0 0.0 12.62378569634034 0.0 53 0.0 0.0 0.0 13.491594087597354 0.0 54 0.0 0.0 0.0 14.449951846579014 0.0 55 0.0 0.0 0.0 15.459341763671384 0.0 56 0.0 0.0 0.0 16.432878318398792 0.0 57 0.0 0.0 0.0 17.40196591575245 0.0 58 0.0 0.0 0.0 18.2907105770036 0.0 59 0.0 0.0 0.0 19.137059291516625 0.0 60 0.0 0.0 0.0 19.965873879909555 0.0 61 0.0 0.0 0.0 20.74103927644251 0.0 62 0.0 0.0 0.0 21.541851603718282 0.0 63 0.0 0.0 0.0 22.316231890126456 0.0 64 0.0 0.0 0.0 23.11782932752701 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTCGTA 455 0.0 53.846157 38 TATGCCG 530 0.0 53.490566 43 TCGTATG 530 0.0 53.490566 40 CTCGTAT 515 0.0 53.00971 39 CCGTCTT 515 0.0 53.00971 47 CGTATGC 535 0.0 52.990654 41 ATCTCGT 465 0.0 52.68817 37 TATCGTG 20 0.0069485027 52.500004 37 CGTCTTC 520 0.0 51.826923 48 GATCTCG 505 0.0 48.51485 36 GCCGTCT 570 0.0 47.894737 46 GTATGCC 595 0.0 47.64706 42 ACAGATC 525 0.0 47.333332 33 TGCCGTC 595 0.0 46.47059 45 CTTGAAA 580 0.0 46.465515 57 ATGCCGT 605 0.0 46.28099 44 AGATCTC 560 0.0 43.75 35 GTCTTCT 610 0.0 43.60656 49 CAGATCT 570 0.0 42.982456 34 CTGCTTG 635 0.0 41.889767 54 >>END_MODULE