##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781181_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1131007 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.889960009089247 34.0 34.0 34.0 27.0 34.0 2 31.79540887014846 34.0 34.0 34.0 24.0 34.0 3 31.807189522257598 34.0 34.0 34.0 27.0 34.0 4 31.977901993533198 34.0 34.0 34.0 27.0 34.0 5 31.980478458577178 34.0 34.0 34.0 27.0 34.0 6 34.92430639244496 38.0 35.0 38.0 27.0 38.0 7 34.799388509531774 38.0 35.0 38.0 27.0 38.0 8 34.652362894305696 38.0 35.0 38.0 27.0 38.0 9 34.92635235679355 38.0 36.0 38.0 27.0 38.0 10-11 34.815884428655174 38.0 35.0 38.0 27.0 38.0 12-13 34.772919177334884 38.0 35.0 38.0 27.0 38.0 14-15 34.66381242556412 38.0 35.0 38.0 26.5 38.0 16-17 34.65729522452116 38.0 34.5 38.0 26.5 38.0 18-19 34.719137901003265 38.0 35.0 38.0 27.0 38.0 20-21 34.64442218306341 38.0 34.5 38.0 26.5 38.0 22-23 34.72684430777175 38.0 35.0 38.0 26.5 38.0 24-25 34.71169188165944 38.0 35.0 38.0 26.5 38.0 26-27 34.64084528212469 38.0 35.0 38.0 26.5 38.0 28-29 34.73015419002712 38.0 35.0 38.0 27.0 38.0 30-31 34.806470693815335 38.0 35.0 38.0 27.0 38.0 32-33 34.763726926535384 38.0 35.0 38.0 27.0 38.0 34-35 34.79206362118006 38.0 35.0 38.0 27.0 38.0 36-37 34.65101498045547 38.0 35.0 38.0 26.5 38.0 38-39 34.65558966478545 38.0 35.0 38.0 26.0 38.0 40-41 34.64026305761149 38.0 35.0 38.0 26.5 38.0 42-43 34.71927936785537 38.0 35.0 38.0 27.0 38.0 44-45 34.731116606705356 38.0 35.0 38.0 27.0 38.0 46-47 34.727796114436075 38.0 35.0 38.0 27.0 38.0 48-49 34.698290549925865 38.0 35.0 38.0 27.0 38.0 50-51 34.57584524233714 37.5 34.5 38.0 26.0 38.0 52-53 34.65670548458144 38.0 35.0 38.0 27.0 38.0 54-55 34.61811509566254 38.0 35.0 38.0 26.0 38.0 56-57 34.59346272834739 37.5 34.5 38.0 26.0 38.0 58-59 34.59774828979839 37.5 35.0 38.0 26.0 38.0 60-61 34.578658222274484 37.5 34.5 38.0 26.0 38.0 62-63 34.55121321088198 37.0 34.5 38.0 26.0 38.0 64-65 34.56388510415939 37.0 35.0 38.0 26.0 38.0 66-67 34.47644444287259 37.0 34.0 38.0 25.0 38.0 68-69 34.27646336406406 37.0 34.0 38.0 24.5 38.0 70-71 34.430770101334474 37.0 34.0 38.0 25.0 38.0 72-73 34.408767584992844 37.0 34.0 38.0 25.0 38.0 74-75 34.41745453387999 37.0 34.0 38.0 25.0 38.0 76 33.165277491651246 37.0 32.0 38.0 22.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 6.0 13 43.0 14 149.0 15 449.0 16 1007.0 17 2028.0 18 3020.0 19 3955.0 20 4857.0 21 5725.0 22 7197.0 23 9011.0 24 11134.0 25 13717.0 26 16655.0 27 20099.0 28 24630.0 29 29533.0 30 36031.0 31 43284.0 32 53773.0 33 66576.0 34 85471.0 35 113398.0 36 175087.0 37 404170.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.22136379350437 18.493873159052065 9.40480474479822 23.879958302645342 2 22.942033073181687 22.250260166382702 30.672577623303837 24.135129137131777 3 19.516059582301438 22.67006305000765 30.869658631644192 26.944218736046725 4 13.996730347380698 17.576902707056632 37.221520291209515 31.204846654353158 5 13.895227880994549 33.41314421572988 36.021439301436686 16.67018860183889 6 28.81635569010625 37.26838118596967 19.789709524344236 14.125553599579844 7 27.463048416145963 31.06063888198747 22.43239873846935 19.043913963397223 8 24.74361343475328 35.63841779935933 21.182715933676803 18.435252832210587 9 24.545736675369824 18.025529461798204 22.441770917421376 34.986962945410596 10-11 24.412713625998776 25.475262310489676 28.40070839526192 21.711315668249622 12-13 25.1036023649721 23.838667665186865 27.53002412893996 23.527705840901074 14-15 22.908125237067498 24.659661699706543 25.132868320001556 27.299344743224403 16-17 22.780981903737114 28.233954343341814 25.76155585243946 23.223507900481607 18-19 21.965602334910393 27.79943006541958 27.688245961342417 22.546721638327615 20-21 22.307731075050818 27.912249879974215 27.428963746466646 22.35105529850832 22-23 22.279889638123212 27.71756837825424 27.603775928785556 22.398766054836997 24-25 22.45980794106491 27.557875415448358 27.36773512453946 22.614581518947276 26-27 22.042480727351823 27.43462242055089 27.495276333391395 23.027620518705895 28-29 21.909634511545907 27.542446686890532 28.06392887046676 22.4839899310968 30-31 22.126344045615987 27.842533246920663 27.64337444419 22.387748263273348 32-33 21.800705035424183 28.004070708669353 27.767732648869547 22.427491607036913 34-35 22.24981808246987 27.321227896909566 28.080683850763084 22.348270169857482 36-37 22.389118723403126 27.548459028105043 27.46914917414304 22.593273074348787 38-39 22.013922106582896 27.559157458795568 27.948721802782828 22.478198631838705 40-41 22.042657560916954 27.187409096495426 28.28169940592764 22.488233936659984 42-43 21.743057293190933 27.145278499602565 28.258445792112692 22.853218415093806 44-45 21.686382135565914 26.808410558024843 28.44690616415283 23.05830114225641 46-47 21.754639891707125 26.699923165815946 28.503802363734266 23.04163457874266 48-49 21.22303398652705 26.684361812084273 29.023516211659167 23.069087989729507 50-51 21.303139591532148 26.508058747647006 28.93275638435483 23.25604527646602 52-53 20.906280862983166 26.46827119549216 29.310030795565368 23.31541714595931 54-55 20.641118932066732 26.702619877684224 29.281162716057462 23.37509847419158 56-57 20.565072656619556 26.661199552610288 29.305750195622476 23.46797759514768 58-59 20.302200121926905 26.59102895609261 29.340396664737707 23.76637425724278 60-61 20.412323370664424 26.59845597567828 28.924748818639696 24.0644718350176 62-63 20.23566640480528 26.57564441552229 29.053749075490792 24.13494010418163 64-65 20.616301158570845 26.176442112792554 28.88367916866894 24.323577559967656 66-67 20.631429569276882 26.13047687676005 28.52790217549878 24.710191378464287 68-69 20.87139314149805 26.101741371611975 28.180246771676522 24.846618715213463 70-71 21.253884819253674 26.20271351585537 27.895367394485437 24.648034270405525 72-73 21.017723175405944 26.24563993969965 27.884005817834577 24.85263106705983 74-75 21.068253455997098 26.41637304874868 27.62176117700629 24.89361231824793 76 21.15070905838779 26.535556367025137 27.292227192227813 25.02150738235926 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 2.5 8 5.0 9 4.5 10 5.5 11 12.5 12 18.0 13 27.5 14 47.5 15 115.0 16 279.0 17 386.0 18 536.0 19 936.5 20 1565.5 21 1944.0 22 2577.0 23 3964.0 24 5827.5 25 6937.0 26 8208.0 27 11062.0 28 14362.0 29 16079.0 30 18335.5 31 22627.0 32 27163.5 33 29665.0 34 32095.0 35 37090.5 36 42370.0 37 45084.0 38 47583.0 39 52441.0 40 56667.5 41 59462.5 42 60390.0 43 60649.0 44 60809.0 45 60374.0 46 60038.0 47 58135.5 48 54132.5 49 49917.5 50 47803.0 51 45334.0 52 40616.0 53 36417.5 54 34468.0 55 32719.0 56 29101.0 57 25501.0 58 23770.0 59 21812.5 60 18196.0 61 14942.5 62 13348.0 63 12159.0 64 10034.5 65 8429.5 66 7116.0 67 6472.0 68 6138.5 69 5394.5 70 4607.5 71 4231.0 72 3970.5 73 3533.0 74 3112.5 75 2869.0 76 2729.5 77 2379.0 78 1960.0 79 1752.0 80 1552.0 81 1203.5 82 896.0 83 737.0 84 626.0 85 425.0 86 266.0 87 197.0 88 165.0 89 110.5 90 68.5 91 39.5 92 30.0 93 23.0 94 9.5 95 3.5 96 4.0 97 5.0 98 5.0 99 10.5 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 4.420839128316624E-5 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 1.7683356513266497E-4 58-59 1.3262517384949872E-4 60-61 1.3262517384949872E-4 62-63 1.3262517384949872E-4 64-65 1.3262517384949872E-4 66-67 1.7683356513266497E-4 68-69 1.7683356513266497E-4 70-71 1.7683356513266497E-4 72-73 1.7683356513266497E-4 74-75 1.7683356513266497E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 1131007.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.91191952109505 #Duplication Level Percentage of deduplicated Percentage of total 1 71.16507738165623 44.77131620947258 2 18.604007189075364 23.408276060979663 3 6.238212110691916 11.77373694790111 4 1.9437307863431514 4.891353392043805 5 0.6160461547665754 1.937832305497743 6 0.2751346771567486 1.0385550400048702 7 0.17673028896337267 0.7782909201342502 8 0.10970340326942928 0.5521321342141257 9 0.10357062205394352 0.5864243975466702 >10 0.730375237205148 8.669536500871503 >50 0.03543936494488702 1.443523613498088 >100 0.001972783873273467 0.14902247783553046 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.957510430969924E-4 0.0 2 0.0 0.0 0.0 0.0011494181733623223 0.0 3 0.0 0.0 0.0 0.0012378349559286547 0.0 4 0.0 0.0 0.0 0.0019451692164593145 0.0 5 0.0 0.0 0.0 0.0021220027815919795 0.0 6 0.0 0.0 0.0 0.0024756699118573095 0.0 7 0.0 0.0 0.0 0.0024756699118573095 0.0 8 0.0 0.0 0.0 0.0024756699118573095 0.0 9 0.0 0.0 0.0 0.0026525034769899745 0.0 10 0.0 0.0 0.0 0.002917753824688972 0.0 11 0.0 0.0 0.0 0.0030061706072553045 0.0 12 0.0 0.0 0.0 0.0031830041723879695 0.0 13 0.0 0.0 0.0 0.003271420954954302 0.0 14 0.0 0.0 0.0 0.0036250880852196315 0.0 15 0.0 0.0 0.0 0.003978755215484962 0.0 16 0.0 0.0 0.0 0.004244005563183959 0.0 17 0.0 0.0 0.0 0.004509255910882957 0.0 18 0.0 0.0 0.0 0.005128173388847284 0.0 19 0.0 0.0 0.0 0.005216590171413616 0.0 20 0.0 0.0 0.0 0.005747090866811611 0.0 21 0.0 0.0 0.0 0.006100757997076941 0.0 22 0.0 0.0 0.0 0.007161759387872931 0.0 23 0.0 0.0 0.0 0.007515426518138261 0.0 24 0.0 0.0 0.0 0.00822276077866892 0.0 25 0.0 0.0 0.0 0.008488011126367918 0.0 26 0.0 0.0 0.0 0.009460595734597576 0.0 27 0.0 0.0 0.0 0.013704601297781534 0.0 28 0.0 0.0 0.0 0.021750528511317792 0.0 29 0.0 0.0 0.0 0.03660454798246165 0.0 30 0.0 0.0 0.0 0.052431152061835164 0.0 31 0.0 0.0 0.0 0.069141923966872 0.0 32 0.0 0.0 0.0 0.0857642790893425 0.0 33 0.0 0.0 0.0 0.10910630968685428 0.0 34 0.0 0.0 0.0 0.14199735280152997 0.0 35 0.0 0.0 0.0 0.1932790866900028 0.0 36 0.0 0.0 0.0 0.28054645108297294 0.0 37 0.0 0.0 0.0 0.4396082429198051 0.0 38 0.0 0.0 0.0 0.6816933935864234 0.0 39 0.0 0.0 0.0 0.9934509689153117 0.0 40 0.0 0.0 0.0 1.3594964487399281 0.0 41 0.0 0.0 0.0 1.7323500208221523 0.0 42 0.0 0.0 0.0 2.1313749605440107 0.0 43 0.0 0.0 0.0 2.5594890217301924 0.0 44 0.0 0.0 0.0 3.021201460291581 0.0 45 0.0 0.0 0.0 3.5673519262038167 0.0 46 0.0 0.0 0.0 4.1640767917439945 0.0 47 0.0 0.0 0.0 4.848422688807408 0.0 48 0.0 0.0 0.0 5.5648638779424 0.0 49 0.0 0.0 0.0 6.296778004026501 0.0 50 0.0 0.0 0.0 7.0221492882006915 0.0 51 0.0 0.0 0.0 7.715955780998703 0.0 52 0.0 0.0 0.0 8.382087820853451 0.0 53 0.0 0.0 0.0 9.001005298817779 0.0 54 0.0 0.0 0.0 9.605334007658662 0.0 55 0.0 0.0 0.0 10.226550321969714 0.0 56 0.0 0.0 0.0 10.84449521532581 0.0 57 0.0 0.0 0.0 11.483483302932695 0.0 58 0.0 0.0 0.0 12.146520755397624 0.0 59 0.0 0.0 0.0 12.803369033082907 0.0 60 0.0 0.0 0.0 13.499828029357909 0.0 61 0.0 0.0 0.0 14.158002558781687 0.0 62 0.0 0.0 0.0 14.765072187882126 0.0 63 0.0 0.0 0.0 15.36091288559664 0.0 64 0.0 0.0 0.0 15.904852931944719 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGAA 75 1.4918078E-6 32.666668 70 TATACCG 65 7.959256E-4 26.923077 6 AAACGGT 70 0.0012265425 25.000002 20 AACCGTA 90 1.9288462E-4 23.333332 10 ATCCTCG 110 2.9234057E-5 22.272728 34 TATCGGC 95 2.7813684E-4 22.105263 15 GGTATAC 150 6.385162E-7 21.000002 1 CGTTCGG 85 0.0037907283 20.588236 24 GTATCGG 105 5.466485E-4 20.000002 14 TCTACGC 90 0.005276814 19.444443 3 TATCGGT 90 0.005276814 19.444443 24 TATGCGG 145 1.1171436E-5 19.310345 43 CGTATCG 110 7.4770185E-4 19.09091 13 ATACCGC 110 7.4770185E-4 19.09091 7 CATATCG 130 1.0576176E-4 18.846153 58 CGCCATA 150 1.4964369E-5 18.666668 55 CAACCGT 115 0.0010080044 18.260868 9 CGATAAA 1720 0.0 17.70349 70 GTAGCGA 100 0.009690278 17.500002 49 AGCGTTC 120 0.0013410505 17.5 27 >>END_MODULE