##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781180_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 199528 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.477060863638187 34.0 33.0 34.0 23.0 34.0 2 31.523675875065155 34.0 33.0 34.0 23.0 34.0 3 31.541543041578123 34.0 33.0 34.0 23.0 34.0 4 31.605228338879755 34.0 34.0 34.0 23.0 34.0 5 31.67782466621226 34.0 34.0 34.0 23.0 34.0 6 34.613232228058216 38.0 35.0 38.0 26.0 38.0 7 34.55545587586705 38.0 35.0 38.0 26.0 38.0 8 34.28911731686781 37.0 34.0 38.0 24.0 38.0 9 34.60289282707189 38.0 35.0 38.0 26.0 38.0 10-11 34.45612645844192 38.0 34.5 38.0 25.5 38.0 12-13 34.406133475001 38.0 34.0 38.0 25.0 38.0 14-15 34.281361513171085 37.5 34.0 38.0 24.0 38.0 16-17 34.26954612886412 37.5 34.0 38.0 24.5 38.0 18-19 34.337461408925066 37.5 34.0 38.0 25.0 38.0 20-21 34.25348071448619 37.0 34.0 38.0 24.5 38.0 22-23 34.31676255964075 37.5 34.0 38.0 24.5 38.0 24-25 34.31434435267231 37.5 34.0 38.0 24.5 38.0 26-27 34.23733009903372 37.0 34.0 38.0 24.0 38.0 28-29 34.329054067599536 37.0 34.0 38.0 24.5 38.0 30-31 34.41199731366024 38.0 34.0 38.0 25.0 38.0 32-33 34.33963153041177 38.0 34.0 38.0 24.5 38.0 34-35 34.380109558558196 38.0 34.0 38.0 24.5 38.0 36-37 34.22578284752015 37.0 34.0 38.0 24.0 38.0 38-39 34.2498371155928 37.0 34.0 38.0 24.0 38.0 40-41 34.21874122930115 37.0 34.0 38.0 24.0 38.0 42-43 34.276046469668415 37.0 34.0 38.0 24.0 38.0 44-45 34.30862585702258 37.0 34.0 38.0 24.5 38.0 46-47 34.29312427328495 37.0 34.0 38.0 24.5 38.0 48-49 34.26448167675714 37.0 34.0 38.0 24.0 38.0 50-51 34.12592718816407 37.0 34.0 38.0 24.0 38.0 52-53 34.215295597610364 37.0 34.0 38.0 24.0 38.0 54-55 34.189356882242095 37.0 34.0 38.0 24.0 38.0 56-57 34.17726835331382 37.0 34.0 38.0 24.0 38.0 58-59 34.15727867767932 37.0 34.0 38.0 24.0 38.0 60-61 34.14050659556553 37.0 34.0 38.0 24.0 38.0 62-63 34.10969888937893 37.0 34.0 38.0 24.0 38.0 64-65 34.11583336674552 37.0 34.0 38.0 24.0 38.0 66-67 34.043480113066835 37.0 34.0 38.0 24.0 38.0 68-69 33.80671133875947 37.0 34.0 38.0 23.0 38.0 70-71 33.96008329657993 37.0 34.0 38.0 23.5 38.0 72-73 33.92287298023335 37.0 34.0 38.0 23.5 38.0 74-75 33.90541427769536 37.0 34.0 38.0 23.5 38.0 76 32.4331121446614 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 26.0 14 101.0 15 314.0 16 748.0 17 1222.0 18 1627.0 19 1675.0 20 1515.0 21 1439.0 22 1450.0 23 1619.0 24 1880.0 25 2314.0 26 2743.0 27 3268.0 28 4105.0 29 4832.0 30 6198.0 31 7518.0 32 9194.0 33 11680.0 34 15323.0 35 20218.0 36 31506.0 37 67008.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.61966240327172 18.78382983841867 10.153963353514293 25.442544404795314 2 23.68138807585903 19.454913596086765 30.901928551381257 25.96176977667295 3 19.535102842708792 21.528807986848964 29.043542760915763 29.89254640952648 4 14.15139729762239 15.98322040014434 36.549256244737585 33.31612605749569 5 14.059680846798445 34.11150314742793 35.04320195661762 16.78561404915601 6 31.030732528767892 36.22849925824947 17.78296780401748 14.957800408965158 7 30.260414578405037 28.40804298143619 22.03199550940219 19.299546930756588 8 26.41032837496492 33.01792229662002 19.532596928751854 21.039152399663205 9 25.043602902850726 16.16164147387835 21.321819494005855 37.472936129265065 10-11 25.948739024096867 23.917445170602623 26.961378854095663 23.172436951204844 12-13 25.77708391804659 22.39635539874103 26.19782687141654 25.62873381179584 14-15 23.65958662443366 23.638035764403995 23.80117076300068 28.90120684816166 16-17 24.165781243735214 26.403061224489793 25.138577041818692 24.292580489956297 18-19 23.628262699971934 26.01740106651698 26.359458321639067 23.994877911872017 20-21 23.467132432540797 26.21060703259693 26.16124052764524 24.161020007217033 22-23 24.016178180505996 25.69463934886332 26.563690309129544 23.725492161501144 24-25 23.390702056854177 26.074535904735175 26.30608235435628 24.22867968405437 26-27 22.710847600336795 26.325377891824708 26.803255683412853 24.160518824425644 28-29 23.370404153802976 26.082554829397374 27.250310733330664 23.296730283468985 30-31 23.591676356200633 26.012389238603102 26.665430415781245 23.73050398941502 32-33 23.085481736899084 26.167004129746203 26.576971653101317 24.1705424802534 34-35 24.172046028627562 25.511707630006814 26.67044224369512 23.645804097670503 36-37 23.8450242572471 25.54854456517381 26.300318752255325 24.306112425323764 38-39 23.078465177819655 26.091074936850966 27.08717573473397 23.743284150595407 40-41 23.526522593320237 24.936850968285153 27.566557074696284 23.97006936369833 42-43 22.968204963714367 25.097981235716286 27.36483100116274 24.568982799406598 44-45 22.43043582855539 24.979952688344493 27.855739545326973 24.733871937773145 46-47 22.57477647247504 24.333677478850085 28.29427448779119 24.797271560883686 48-49 21.84079427448779 24.254240006415138 28.98741028828034 24.917555430816726 50-51 21.73354115713083 24.48603704743194 28.64785894711519 25.13256284832204 52-53 21.302523956537428 24.4509542520348 29.164077222244494 25.08244456918327 54-55 20.528447135239166 25.19546128864119 29.007457599935847 25.268633976183796 56-57 20.215709073413255 25.207740267030193 29.017731847159293 25.558818812397256 58-59 20.730173208772705 25.026312096547855 28.36243534741991 25.881079347259533 60-61 20.439487189767853 24.76143699129947 28.563159055370672 26.235916763562006 62-63 20.02525961268594 24.50508199350467 28.996932761316707 26.472725632492683 64-65 21.156429172847922 24.624363497854937 27.735956858185318 26.483250471111823 66-67 21.167204602862753 24.32866565093621 27.34829196904695 27.155837777154083 68-69 20.888045788059824 24.319894952086926 27.216230303516298 27.575828956336956 70-71 21.539332825468104 24.385299306363017 27.169620303917245 26.905747564251637 72-73 21.46265185838579 24.507838498857303 26.621326330139127 27.40818331261778 74-75 21.583938093901608 25.10625075177419 26.39855057936731 26.9112605749569 76 21.789423038370554 25.306222685537872 26.20985525840985 26.69449901768173 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.5 14 3.0 15 7.5 16 21.5 17 32.0 18 37.5 19 66.0 20 104.5 21 120.0 22 139.0 23 207.5 24 368.5 25 480.0 26 599.0 27 799.5 28 1063.5 29 1246.0 30 1486.5 31 1903.5 32 2521.0 33 2962.0 34 3427.0 35 4444.5 36 5682.0 37 6367.0 38 6862.0 39 8259.5 40 9995.5 41 11500.5 42 12172.0 43 12370.0 44 12770.0 45 12867.0 46 12762.0 47 12570.0 48 11679.5 49 10425.5 50 9870.0 51 9219.0 52 7690.5 53 6263.0 54 5713.0 55 5259.0 56 4317.5 57 3546.5 58 3263.0 59 2993.5 60 2600.5 61 2299.5 62 2122.0 63 2069.5 64 1949.5 65 1859.5 66 1787.0 67 1737.0 68 1716.0 69 1693.5 70 1670.5 71 1649.0 72 1635.0 73 1589.5 74 1452.5 75 1347.0 76 1301.0 77 1132.0 78 926.5 79 844.0 80 727.5 81 527.5 82 382.0 83 320.0 84 266.5 85 170.5 86 121.5 87 115.0 88 82.0 89 37.5 90 21.0 91 12.5 92 9.0 93 9.5 94 8.0 95 3.5 96 1.0 97 1.0 98 1.5 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 199528.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.536405917966405 #Duplication Level Percentage of deduplicated Percentage of total 1 71.28663786561985 35.312838298384186 2 13.80932627808861 13.681287839300749 3 5.624298100952053 8.358225411972255 4 2.5131779965398273 4.979752215227938 5 1.4326328675927518 3.548374163024738 6 0.9368771436376329 2.784571588949922 7 0.6991167454142595 2.424221161942184 8 0.5746719412377704 2.277374604065595 9 0.4269569704266535 1.9034922416903892 >10 2.640658039842572 22.932620985525844 >50 0.05159906514634911 1.557174932841506 >100 0.00404698550167444 0.2400665570746963 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0010023655827753497 0.0 2 0.0 0.0 0.0 0.0010023655827753497 0.0 3 0.0 0.0 0.0 0.0010023655827753497 0.0 4 0.0 0.0 0.0 0.0020047311655506995 0.0 5 0.0 0.0 0.0 0.0030070967483260495 0.0 6 0.0 0.0 0.0 0.0035082795397137242 0.0 7 0.0 0.0 0.0 0.0035082795397137242 0.0 8 0.0 0.0 0.0 0.0035082795397137242 0.0 9 0.0 0.0 0.0 0.005011827913876749 0.0 10 0.0 0.0 0.0 0.005011827913876749 0.0 11 0.0 0.0 0.0 0.005011827913876749 0.0 12 0.0 0.0 0.0 0.005011827913876749 0.0 13 0.0 0.0 0.0 0.005011827913876749 0.0 14 0.0 0.0 0.0 0.005011827913876749 0.0 15 0.0 0.0 0.0 0.005011827913876749 0.0 16 0.0 0.0 0.0 0.005011827913876749 0.0 17 0.0 0.0 0.0 0.005011827913876749 0.0 18 0.0 0.0 0.0 0.005011827913876749 0.0 19 0.0 0.0 0.0 0.008018924662202798 0.0 20 0.0 0.0 0.0 0.008018924662202798 0.0 21 0.0 0.0 0.0 0.008018924662202798 0.0 22 0.0 0.0 0.0 0.010023655827753499 0.0 23 0.0 0.0 0.0 0.010023655827753499 0.0 24 0.0 0.0 0.0 0.011527204201916523 0.0 25 0.0 0.0 0.0 0.012529569784691873 0.0 26 0.0 0.0 0.0 0.012529569784691873 0.0 27 0.0 0.0 0.0 0.02556032236077142 0.0 28 0.0 0.0 0.0 0.046609999599053764 0.0 29 0.0 0.0 0.0 0.06916322521149913 0.0 30 0.0 0.0 0.0 0.08620344011868009 0.0 31 0.0 0.0 0.0 0.10474720340002405 0.0 32 0.0 0.0 0.0 0.13481817088328454 0.0 33 0.0 0.0 0.0 0.1914518263100918 0.0 34 0.0 0.0 0.0 0.2641233310613047 0.0 35 0.0 0.0 0.0 0.3718776312096548 0.0 36 0.0 0.0 0.0 0.5653341886852973 0.0 37 0.0 0.0 0.0 0.8770698849284311 0.0 38 0.0 0.0 0.0 1.2539593440519625 0.0 39 0.0 0.0 0.0 1.7511326731085362 0.0 40 0.0 0.0 0.0 2.280381700813921 0.0 41 0.0 0.0 0.0 2.8682691151116635 0.0 42 0.0 0.0 0.0 3.561404915600818 0.0 43 0.0 0.0 0.0 4.374323403231626 0.0 44 0.0 0.0 0.0 5.299506836133275 0.0 45 0.0 0.0 0.0 6.333446934766048 0.0 46 0.0 0.0 0.0 7.429533699530893 0.0 47 0.0 0.0 0.0 8.535142937332104 0.0 48 0.0 0.0 0.0 9.631229702096949 0.0 49 0.0 0.0 0.0 10.636602381620625 0.0 50 0.0 0.0 0.0 11.625937211819895 0.0 51 0.0 0.0 0.0 12.534080429814361 0.0 52 0.0 0.0 0.0 13.488833647407883 0.0 53 0.0 0.0 0.0 14.411511166352593 0.0 54 0.0 0.0 0.0 15.353233631370033 0.0 55 0.0 0.0 0.0 16.361112224850647 0.0 56 0.0 0.0 0.0 17.40357243093701 0.0 57 0.0 0.0 0.0 18.318732208010907 0.0 58 0.0 0.0 0.0 19.224369512048433 0.0 59 0.0 0.0 0.0 20.103945310933803 0.0 60 0.0 0.0 0.0 20.983521109819172 0.0 61 0.0 0.0 0.0 21.84254841425765 0.0 62 0.0 0.0 0.0 22.688544966120045 0.0 63 0.0 0.0 0.0 23.524016679363296 0.0 64 0.0 0.0 0.0 24.339942263742433 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGATCCG 15 0.002222203 70.0 32 GCGAAGT 40 7.452927E-7 52.5 32 CACGCGA 20 0.0069436613 52.5 36 CGCGATA 20 0.0069436613 52.5 38 CGATTAA 20 0.0069436613 52.5 42 CGGATCC 20 0.0069436613 52.5 31 TTGCGAG 20 0.0069436613 52.5 48 GACGAAT 20 0.0069436613 52.5 23 GATAGCA 20 0.0069436613 52.5 41 ACGGCTA 35 2.0812182E-5 50.0 50 CCGCATG 40 4.5810983E-5 43.75 21 TACCAAG 35 0.0012532761 40.0 42 TTTCGTC 35 0.0012532761 40.0 18 GCTTGCT 45 9.174581E-5 38.88889 35 ATTTTGA 45 9.174581E-5 38.88889 30 GTTGTCA 55 6.6714274E-6 38.181816 58 CGAAGTT 55 6.6714274E-6 38.181816 33 GTCAAAA 65 4.843241E-7 37.692307 61 CTCAACG 50 1.7054306E-4 35.000004 46 CAACGGC 50 1.7054306E-4 35.000004 48 >>END_MODULE