##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781179_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 89451 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.866407306793665 34.0 32.0 34.0 21.0 34.0 2 31.07930598875362 34.0 32.0 34.0 21.0 34.0 3 31.015583950989928 34.0 32.0 34.0 23.0 34.0 4 31.155593565192117 34.0 33.0 34.0 23.0 34.0 5 31.15484455176577 34.0 33.0 34.0 23.0 34.0 6 33.87383036522789 37.0 34.0 38.0 22.0 38.0 7 33.941968228415554 37.0 34.0 38.0 23.0 38.0 8 33.6609428625728 37.0 34.0 38.0 21.0 38.0 9 33.94597041955931 37.0 34.0 38.0 23.0 38.0 10-11 33.79687762014958 37.0 34.0 38.0 22.0 38.0 12-13 33.78100300723301 37.0 34.0 38.0 22.0 38.0 14-15 33.640171714122815 37.0 34.0 38.0 21.5 38.0 16-17 33.60478921420666 37.0 34.0 38.0 21.5 38.0 18-19 33.63309521413959 37.0 34.0 38.0 21.5 38.0 20-21 33.58382242792143 37.0 34.0 38.0 21.0 38.0 22-23 33.614034499334835 37.0 34.0 38.0 21.5 38.0 24-25 33.626689472448604 37.0 34.0 38.0 21.5 38.0 26-27 33.55162602989346 37.0 34.0 38.0 21.0 38.0 28-29 33.60957395669138 37.0 34.0 38.0 21.5 38.0 30-31 33.66273155135214 37.0 34.0 38.0 22.0 38.0 32-33 33.648690344434385 37.0 34.0 38.0 21.5 38.0 34-35 33.64628679388716 37.0 34.0 38.0 21.5 38.0 36-37 33.517730377525126 37.0 34.0 38.0 21.0 38.0 38-39 33.536271254653386 37.0 34.0 38.0 21.0 38.0 40-41 33.50355501894892 37.0 34.0 38.0 21.0 38.0 42-43 33.58145241528882 37.0 34.0 38.0 21.0 38.0 44-45 33.62042906172094 37.0 34.0 38.0 21.5 38.0 46-47 33.5807704776917 37.0 34.0 38.0 21.0 38.0 48-49 33.5585460196085 37.0 34.0 38.0 21.5 38.0 50-51 33.421934914087046 37.0 34.0 38.0 21.0 38.0 52-53 33.52717689014097 37.0 34.0 38.0 21.0 38.0 54-55 33.49162670065175 37.0 34.0 38.0 21.0 38.0 56-57 33.44434942035304 37.0 34.0 38.0 21.0 38.0 58-59 33.405266570524645 37.0 34.0 38.0 21.0 38.0 60-61 33.38286324356352 37.0 34.0 38.0 21.0 38.0 62-63 33.33020871762194 37.0 34.0 38.0 21.0 38.0 64-65 33.388475254608664 37.0 34.0 38.0 21.0 38.0 66-67 33.25429564789661 37.0 34.0 38.0 21.0 38.0 68-69 33.04038523884585 37.0 33.5 38.0 20.0 38.0 70-71 33.18006506355435 37.0 34.0 38.0 21.0 38.0 72-73 33.11769013202759 37.0 33.0 38.0 21.0 38.0 74-75 33.138338308124005 37.0 33.0 38.0 21.0 38.0 76 31.75401057562241 36.0 28.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 5.0 13 26.0 14 96.0 15 289.0 16 668.0 17 1129.0 18 1401.0 19 1387.0 20 1139.0 21 949.0 22 861.0 23 785.0 24 1031.0 25 1099.0 26 1320.0 27 1568.0 28 1824.0 29 2267.0 30 2767.0 31 3175.0 32 3876.0 33 4991.0 34 6299.0 35 8377.0 36 13092.0 37 29030.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 45.7680741411499 17.722552011715912 10.137393656862416 26.37198019027177 2 23.306614794692067 19.91481369688433 30.925311064158027 25.853260444265576 3 20.633643000078255 21.07522554247577 28.04440419894691 30.246727258499067 4 15.364836614459312 15.724810231299818 34.538462398408065 34.3718907558328 5 15.345831796178913 32.52506959117282 33.7782696671921 18.350828945456172 6 31.646376228326123 34.271277011995394 17.361460464388323 16.720886295290157 7 30.404355457177672 27.231668734838067 20.808040156063097 21.555935651921164 8 25.985176241741286 32.93311421895787 19.223932655867458 21.857776883433388 9 24.535220399995527 15.84666465439179 20.594515433030374 39.02359951258231 10-11 26.9862829929235 22.98800460587361 25.944371778962783 24.08134062224011 12-13 26.257951280589374 21.344087824619066 25.114308392304167 27.283652502487392 14-15 24.60453209019463 22.358609741646266 22.716347497512604 30.3205106706465 16-17 25.217716962359283 24.572671071312786 23.889615543705492 26.319996422622445 18-19 24.48379559758974 24.453611474438517 24.905255391219775 26.157337536751964 20-21 24.464790779309343 24.814144056522565 24.707381695006205 26.013683469161887 22-23 24.793462342511543 24.2115795239852 24.973449150931796 26.02150898257146 24-25 24.769985802282815 23.924271388805042 24.680551363316226 26.625191445595913 26-27 24.20598987154979 24.688376876725805 24.794021307755084 26.311611943969325 28-29 24.611798638360664 24.297101206246996 25.9052442119149 25.185855943477435 30-31 24.842651283943166 24.178600574616272 24.81582095225319 26.162927189187375 32-33 24.137796111837766 24.781165107153637 24.923701244256634 26.157337536751964 34-35 25.21100937943679 23.74484354562833 25.243429363562175 25.800717711372705 36-37 25.247901085510506 23.64590669752155 24.934321583883914 26.171870633084033 38-39 24.131088528915274 23.892410369923198 25.79233323271959 26.18416786844194 40-41 24.448580787246648 23.524611239673117 26.26968955070374 25.757118422376497 42-43 23.937686554650032 23.330091334920795 26.172988563571113 26.559233546858056 44-45 23.31276341237102 23.441884383629024 26.94380163441437 26.301550569585586 46-47 23.681680473108184 23.46368402812713 26.89852544968754 25.956110049077147 48-49 23.15345831796179 23.393813372684484 27.008082637421605 26.444645671932122 50-51 22.871180869973507 23.818067992532225 26.455266011559402 26.85548512593487 52-53 22.37593766419604 23.890733474192576 27.181361862919363 26.551966998692023 54-55 22.146202949100623 24.09531475332864 27.36470246280086 26.393779834769877 56-57 22.228370839901174 24.336228773294877 27.027087455702002 26.408312931101946 58-59 22.383204212362077 24.107611988686546 26.69618003152564 26.81300376742574 60-61 22.116018825949403 23.44356127935965 26.85548512593487 27.58493476875608 62-63 22.156823288727907 23.53467261405686 27.046651239225945 27.26185285798929 64-65 22.681132687169512 23.581066729270773 26.365272607349276 27.372527976210435 66-67 22.594493074420633 23.73813596270584 25.824753216844975 27.84261774602855 68-69 22.342958714827112 24.298778101977618 25.863321818649315 27.494941364545955 70-71 22.809694693183978 23.989670322299357 26.115415143486377 27.085219841030284 72-73 22.601200657343128 24.209902628254575 25.43906719880158 27.749829515600723 74-75 22.677778895708265 24.689494807212885 25.402734457971405 27.22999183910744 76 23.22612379962214 24.35187980011403 25.21156834468033 27.210428055583503 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.0 14 5.0 15 10.0 16 11.5 17 12.0 18 21.5 19 34.5 20 51.5 21 65.0 22 93.0 23 144.5 24 196.0 25 224.0 26 293.0 27 406.0 28 513.5 29 577.0 30 722.5 31 904.5 32 1152.5 33 1364.0 34 1520.5 35 1870.0 36 2368.0 37 2673.0 38 2847.5 39 3278.0 40 3798.5 41 4224.0 42 4385.0 43 4597.5 44 4777.0 45 4690.0 46 4636.0 47 4585.0 48 4271.5 49 3874.5 50 3740.0 51 3416.0 52 2866.0 53 2541.5 54 2443.0 55 2296.5 56 2024.0 57 1817.5 58 1737.0 59 1619.5 60 1493.0 61 1499.0 62 1514.0 63 1453.0 64 1379.5 65 1374.0 66 1429.0 67 1477.0 68 1440.5 69 1393.0 70 1383.5 71 1385.0 72 1410.0 73 1348.5 74 1231.0 75 1200.0 76 1140.5 77 984.5 78 789.5 79 691.0 80 582.0 81 428.0 82 330.0 83 277.0 84 218.0 85 125.5 86 75.5 87 59.0 88 46.0 89 25.0 90 14.5 91 7.5 92 3.0 93 2.0 94 0.5 95 0.5 96 1.0 97 1.5 98 1.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 89451.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.53593587550726 #Duplication Level Percentage of deduplicated Percentage of total 1 71.25023084025854 43.131994052609805 2 15.089566020313944 18.269220019899162 3 6.51708217913204 11.83553006674045 4 2.886426592797784 6.989301405238622 5 1.4090489381348108 4.264904808219025 6 0.8365650969529086 3.0385350638897273 7 0.5060018467220684 2.1441906742238768 8 0.37488457987072943 1.8155191110216768 9 0.25854108956602034 1.4085924137237147 >10 0.8716528162511542 7.102212384433935 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.006707582922493879 0.0 2 0.0 0.0 0.0 0.006707582922493879 0.0 3 0.0 0.0 0.0 0.006707582922493879 0.0 4 0.0 0.0 0.0 0.011179304870823132 0.0 5 0.0 0.0 0.0 0.013415165844987758 0.0 6 0.0 0.0 0.0 0.013415165844987758 0.0 7 0.0 0.0 0.0 0.013415165844987758 0.0 8 0.0 0.0 0.0 0.013415165844987758 0.0 9 0.0 0.0 0.0 0.015651026819152387 0.0 10 0.0 0.0 0.0 0.0167689573062347 0.0 11 0.0 0.0 0.0 0.01788688779331701 0.0 12 0.0 0.0 0.0 0.01788688779331701 0.0 13 0.0 0.0 0.0 0.01788688779331701 0.0 14 0.0 0.0 0.0 0.020122748767481637 0.0 15 0.0 0.0 0.0 0.02124067925456395 0.0 16 0.0 0.0 0.0 0.02124067925456395 0.0 17 0.0 0.0 0.0 0.022358609741646263 0.0 18 0.0 0.0 0.0 0.022358609741646263 0.0 19 0.0 0.0 0.0 0.02347654022872858 0.0 20 0.0 0.0 0.0 0.025712401202893205 0.0 21 0.0 0.0 0.0 0.026830331689975517 0.0 22 0.0 0.0 0.0 0.03018412315122246 0.0 23 0.0 0.0 0.0 0.0335379146124694 0.0 24 0.0 0.0 0.0 0.04359928899621022 0.0 25 0.0 0.0 0.0 0.04359928899621022 0.0 26 0.0 0.0 0.0 0.04695308045745716 0.0 27 0.0 0.0 0.0 0.0681937597120211 0.0 28 0.0 0.0 0.0 0.09502409140199662 0.0 29 0.0 0.0 0.0 0.1263261450403014 0.0 30 0.0 0.0 0.0 0.1520385462431946 0.0 31 0.0 0.0 0.0 0.1922840437781579 0.0 32 0.0 0.0 0.0 0.2191143754681334 0.0 33 0.0 0.0 0.0 0.2705391778739198 0.0 34 0.0 0.0 0.0 0.3800963656079865 0.0 35 0.0 0.0 0.0 0.5265452594157696 0.0 36 0.0 0.0 0.0 0.7747258275480431 0.0 37 0.0 0.0 0.0 1.1380532358497948 0.0 38 0.0 0.0 0.0 1.5259751148673575 0.0 39 0.0 0.0 0.0 1.9642038658036243 0.0 40 0.0 0.0 0.0 2.4180836435590436 0.0 41 0.0 0.0 0.0 2.816066896960347 0.0 42 0.0 0.0 0.0 3.297894936892824 0.0 43 0.0 0.0 0.0 3.844562945076075 0.0 44 0.0 0.0 0.0 4.4918446970967345 0.0 45 0.0 0.0 0.0 5.135772657656147 0.0 46 0.0 0.0 0.0 5.840068864518004 0.0 47 0.0 0.0 0.0 6.556662306737767 0.0 48 0.0 0.0 0.0 7.236364042883814 0.0 49 0.0 0.0 0.0 7.898178891236543 0.0 50 0.0 0.0 0.0 8.565583392024683 0.0 51 0.0 0.0 0.0 9.156968619691227 0.0 52 0.0 0.0 0.0 9.781891761970241 0.0 53 0.0 0.0 0.0 10.358743893304714 0.0 54 0.0 0.0 0.0 10.975841522174152 0.0 55 0.0 0.0 0.0 11.597410872991917 0.0 56 0.0 0.0 0.0 12.223451945758013 0.0 57 0.0 0.0 0.0 12.849493018524107 0.0 58 0.0 0.0 0.0 13.469944438854792 0.0 59 0.0 0.0 0.0 14.03002761288303 0.0 60 0.0 0.0 0.0 14.634828006394562 0.0 61 0.0 0.0 0.0 15.204972554806542 0.0 62 0.0 0.0 0.0 15.797475712960168 0.0 63 0.0 0.0 0.0 16.349733373578832 0.0 64 0.0 0.0 0.0 16.889693798839588 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGCGTA 15 0.0022181848 70.0 21 TTAGCCC 15 0.0022181848 70.0 5 AAGCTAC 15 0.0022181848 70.0 19 TAAACGC 20 0.006931202 52.5 13 ATCCGCT 20 0.006931202 52.5 30 TCATCCG 20 0.006931202 52.5 28 AAGGCGT 20 0.006931202 52.5 48 CCGCATT 20 0.006931202 52.5 65 AATTGAC 30 5.8502145E-4 46.666664 51 CAGGAAT 35 0.0012495717 40.000004 13 AAATTGA 50 1.6979288E-4 35.000004 50 CTTTTAA 40 0.0024075662 35.0 37 CATAGTG 40 0.0024075662 35.0 50 TTTTAAC 55 2.971595E-4 31.81818 38 TTTCCTG 50 0.00717543 28.000002 43 ACTTTTA 50 0.00717543 28.000002 36 TCTTACT 70 0.0012177308 25.000002 22 AACAGGG 85 0.0037639043 20.588236 7 AAACTGG 95 0.007160027 18.421053 70 AAACCCC 95 0.007160027 18.421053 4 >>END_MODULE