SRR1781179_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781179_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	80868
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCGT	3944	4.877083642479102	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCG	431	0.5329673047435326	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCC	264	0.3264579314438344	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCTTATTAACCTCGTATGCCGT	202	0.24978978087747936	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCTTATTAAACTCGTATGCCGT	125	0.154572884206361	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGAGCG	15	0.0022174108	70.0	5
CTCGAAA	15	0.0022174108	70.0	57
AATCTCG	660	0.0	58.86364	36
TCTCGTA	670	0.0	58.507465	38
CGTATGC	755	0.0	57.947018	41
TCGTATG	755	0.0	57.947018	40
ATCTCGT	680	0.0	57.647057	37
CTCGTAT	730	0.0	57.534245	39
CGTCTTC	725	0.0	57.448277	48
CCGTCTT	720	0.0	57.361107	47
GCCGTCT	725	0.0	56.96552	46
TATGCCG	765	0.0	56.73203	43
GTATGCC	765	0.0	56.73203	42
TCTTCTG	735	0.0	56.666668	50
CTTCTGC	755	0.0	56.55629	51
TAATCTC	690	0.0	56.304344	35
TACCACT	25	2.3777202E-4	55.999996	51
AATCGTC	25	2.3777202E-4	55.999996	28
TGAAAAA	745	0.0	55.906044	59
TTGAAAA	745	0.0	55.906044	58