##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781179_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 80868 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.32036157689073 34.0 34.0 34.0 33.0 34.0 2 33.33471830637582 34.0 34.0 34.0 33.0 34.0 3 33.383019241232624 34.0 34.0 34.0 34.0 34.0 4 33.454889449473214 34.0 34.0 34.0 34.0 34.0 5 33.47352475639313 34.0 34.0 34.0 34.0 34.0 6 36.87958154028787 38.0 37.0 38.0 34.0 38.0 7 36.75552752633922 38.0 37.0 38.0 34.0 38.0 8 36.58963990700895 38.0 37.0 38.0 34.0 38.0 9 36.52739031508137 38.0 37.0 38.0 34.0 38.0 10-11 36.4621172775387 38.0 37.0 38.0 34.0 38.0 12-13 36.41160285898006 38.0 37.0 38.0 34.0 38.0 14-15 36.41792798140179 38.0 37.0 38.0 34.0 38.0 16-17 36.34250877973982 38.0 37.0 38.0 34.0 38.0 18-19 36.30201068407776 38.0 37.0 38.0 34.0 38.0 20-21 36.265624227135575 38.0 37.0 38.0 34.0 38.0 22-23 36.32964213285848 38.0 37.0 38.0 34.0 38.0 24-25 36.29870282435574 38.0 37.0 38.0 34.0 38.0 26-27 36.0150553989217 38.0 36.5 38.0 32.0 38.0 28-29 35.9923640995202 38.0 37.0 38.0 32.0 38.0 30-31 36.07361379037444 38.0 37.0 38.0 32.5 38.0 32-33 36.015624227135575 38.0 37.0 38.0 32.0 38.0 34-35 36.0406464856309 38.0 37.0 38.0 32.0 38.0 36-37 35.985006430231984 38.0 37.0 38.0 32.0 38.0 38-39 35.56104392343077 38.0 36.0 38.0 31.0 38.0 40-41 35.86423554434387 38.0 36.0 38.0 31.5 38.0 42-43 35.995140228520555 38.0 37.0 38.0 32.0 38.0 44-45 35.95302839194737 38.0 36.5 38.0 32.0 38.0 46-47 35.982149923331846 38.0 37.0 38.0 32.0 38.0 48-49 35.91969011228174 38.0 36.5 38.0 31.5 38.0 50-51 35.79164193500519 38.0 36.0 38.0 31.0 38.0 52-53 35.829425730820596 38.0 36.0 38.0 31.0 38.0 54-55 35.81927956670129 38.0 36.0 38.0 31.0 38.0 56-57 35.79158628876688 38.0 36.0 38.0 31.0 38.0 58-59 35.71413909086412 38.0 36.0 38.0 31.0 38.0 60-61 35.693519068111 38.0 36.0 38.0 31.0 38.0 62-63 35.67675718454766 38.0 36.0 38.0 31.0 38.0 64-65 35.62678686254142 38.0 36.0 38.0 31.0 38.0 66-67 35.518078844536774 38.0 36.0 38.0 31.0 38.0 68-69 35.28684399267943 38.0 36.0 38.0 29.0 38.0 70-71 34.80950437750408 38.0 35.5 38.0 25.5 38.0 72-73 34.4447061878617 38.0 35.0 38.0 24.0 38.0 74-75 34.434776425780285 38.0 35.0 38.0 24.0 38.0 76 33.53572488499778 37.0 34.0 38.0 22.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 6.0 22 13.0 23 40.0 24 72.0 25 149.0 26 264.0 27 490.0 28 772.0 29 1227.0 30 1802.0 31 2722.0 32 3670.0 33 5011.0 34 6854.0 35 9529.0 36 13297.0 37 34948.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.442004253845774 16.64069842212 9.517979917890884 31.399317406143346 2 22.406885294554087 18.866547954691594 33.82549339664639 24.90107335410793 3 20.188455260424394 19.69382203096404 31.776475243606868 28.3412474650047 4 14.864965128357325 20.69792748676856 32.574071326111685 31.86303605876243 5 15.202552307464016 31.015976653311572 37.17787010931394 16.603600929910474 6 30.914576841272197 37.938368699609235 16.262304001582827 14.884750457535736 7 28.63679081960726 26.584062917346785 19.410644507097988 25.368501755947964 8 25.646732947519414 36.51506158183707 16.96344660434288 20.87475886630064 9 23.528466142355445 14.613938764406193 18.395409803630606 43.46218528960776 10-11 25.64364148983529 24.878814858782214 26.346020675668992 23.13152297571351 12-13 24.71867735074442 20.1278626898155 26.415887619330263 28.737572340109807 14-15 23.39429687886432 20.778923678092696 20.858683286343176 34.96809615669981 16-17 27.280877479349066 26.104268684770243 21.385467675718456 25.229386160162235 18-19 27.081787604491268 23.41346391650591 22.263441658010585 27.241306820992232 20-21 23.494460107830044 23.286095859919868 22.30363060790424 30.915813424345846 22-23 23.828337537715782 25.918781223722608 22.552802097244893 27.700079141316714 24-25 27.366201711430975 25.71412672503339 22.043329870900727 24.876341692634913 26-27 26.787480832962355 26.34354750952169 22.576915467181085 24.29205619033487 28-29 24.042884700994215 23.017139041400803 26.009051788099125 26.93092446950586 30-31 23.68798535885641 22.43470841371123 26.21123312064104 27.666073106791316 32-33 23.376366424296386 26.187738042241676 26.32314388880645 24.11275164465549 34-35 24.128208933076124 23.127813226492556 29.175322748182225 23.568655092249095 36-37 23.7825839639907 28.45624969085423 23.638522035910373 24.122644309244695 38-39 23.35225305436019 23.804842459316415 25.979992085868332 26.862912400455063 40-41 23.544541722312907 21.8312558737696 27.024286491566503 27.59991591235099 42-43 26.322525597269625 21.9357471434931 26.70957609932235 25.03215115991492 44-45 22.703046940693476 25.706088935054655 27.492333184943362 24.098530939308503 46-47 25.764826631053072 22.437799871395363 24.684671316219024 27.112702181332544 48-49 25.118711975070486 21.988301924123263 24.374907256269477 28.518078844536777 50-51 22.30053915022011 22.239328288074393 27.626502448434486 27.833630113271006 52-53 21.52334668843053 21.983973883365486 31.331305337092548 25.161374091111444 54-55 21.021912252065096 22.142874808329623 28.795073453034576 28.04013948657071 56-57 24.10533214621358 22.335781767819164 25.150863134985407 28.40802295098185 58-59 21.63154770737498 22.42543404065885 30.309269426720086 25.633748825246077 60-61 24.600583667210763 25.40745412276797 24.68096156699807 25.311000643023196 62-63 20.422169461344414 29.287233516347627 24.15046742840184 26.14012959390612 64-65 20.830241875649204 29.74971558589306 23.325048226739874 26.094994311717862 66-67 20.786961468071425 29.48075876737399 23.223030123163674 26.50924964139091 68-69 20.7548103081565 29.874610476331796 23.164910718702085 26.205668496809615 70-71 21.07261215808478 28.020972448929122 23.736212098728792 27.170203294257306 72-73 21.132586437156846 25.62014641143592 24.622223870999655 28.62504328040758 74-75 21.085596280358114 25.158282633427316 25.361700549042887 28.394420537171687 76 21.19503388237622 25.024731661473016 25.660335361329572 28.11989909482119 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.5 15 5.5 16 8.5 17 9.0 18 14.5 19 35.0 20 49.0 21 48.0 22 83.5 23 124.0 24 163.5 25 198.0 26 249.5 27 312.5 28 411.0 29 498.0 30 598.0 31 756.5 32 967.0 33 1119.0 34 1218.5 35 1466.5 36 2071.5 37 2528.0 38 3124.5 39 4100.0 40 4565.0 41 4455.5 42 4260.0 43 4165.5 44 4009.0 45 3896.0 46 3845.0 47 3788.5 48 3509.5 49 3154.5 50 3022.0 51 2851.5 52 2447.0 53 2106.5 54 2000.0 55 1935.5 56 1747.0 57 1540.5 58 1458.0 59 1362.5 60 1231.0 61 1194.0 62 1193.0 63 1183.5 64 1221.0 65 1291.0 66 1343.5 67 1373.0 68 1355.5 69 1351.5 70 1287.0 71 1209.0 72 1311.5 73 1278.5 74 1137.5 75 1132.0 76 1042.5 77 875.5 78 748.5 79 699.0 80 605.5 81 433.5 82 285.5 83 216.0 84 174.5 85 105.0 86 59.0 87 41.0 88 28.5 89 16.0 90 9.5 91 2.0 92 1.0 93 1.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 80868.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.536281347380914 #Duplication Level Percentage of deduplicated Percentage of total 1 60.14378791282857 29.79299599347084 2 21.29608826980204 21.09858040263145 3 8.814498614543547 13.099124499183857 4 4.0415387303727 8.008111984963149 5 1.8372899972540502 4.550625711035267 6 1.1557952020769364 3.4352277786021665 7 0.7114506103497341 2.466983231933521 8 0.48678199655508125 1.9290695948953849 9 0.3594697820714446 1.6026116634515506 >10 1.135824658628523 7.708858881139635 >50 0.004992635862103398 0.16693871494286985 >100 0.009985271724206796 1.2637879012712074 >500 0.0 0.0 >1k 0.002496317931051699 4.877083642479102 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCGT 3944 4.877083642479102 No Hit TCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCG 431 0.5329673047435326 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCC 264 0.3264579314438344 No Hit CTTATACACATCTCCGAGCCCACGAGACTCTTATTAACCTCGTATGCCGT 202 0.24978978087747936 No Hit CTTATACACATCTCCGAGCCCACGAGACTCTTATTAAACTCGTATGCCGT 125 0.154572884206361 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00618291536825444 0.0 2 0.0 0.0 0.0 0.00618291536825444 0.0 3 0.0 0.0 0.0 0.00618291536825444 0.0 4 0.0 0.0 0.0 0.01236583073650888 0.0 5 0.0 0.0 0.0 0.013602413810159766 0.0 6 0.0 0.0 0.0 0.013602413810159766 0.0 7 0.0 0.0 0.0 0.013602413810159766 0.0 8 0.0 0.0 0.0 0.013602413810159766 0.0 9 0.0 0.0 0.0 0.016075579957461544 0.0 10 0.0 0.0 0.0 0.01731216303111243 0.0 11 0.0 0.0 0.0 0.018548746104763317 0.0 12 0.0 0.0 0.0 0.019785329178414204 0.0 13 0.0 0.0 0.0 0.019785329178414204 0.0 14 0.0 0.0 0.0 0.02225849532571598 0.0 15 0.0 0.0 0.0 0.02349507839936687 0.0 16 0.0 0.0 0.0 0.02349507839936687 0.0 17 0.0 0.0 0.0 0.025968244546668646 0.0 18 0.0 0.0 0.0 0.025968244546668646 0.0 19 0.0 0.0 0.0 0.027204827620319533 0.0 20 0.0 0.0 0.0 0.030914576841272197 0.0 21 0.0 0.0 0.0 0.030914576841272197 0.0 22 0.0 0.0 0.0 0.03338774298857397 0.0 23 0.0 0.0 0.0 0.03338774298857397 0.0 24 0.0 0.0 0.0 0.038334075283177525 0.0 25 0.0 0.0 0.0 0.038334075283177525 0.0 26 0.0 0.0 0.0 0.0408072414304793 0.0 27 0.0 0.0 0.0 0.06306573675619528 0.0 28 0.0 0.0 0.0 0.09398031359746747 0.0 29 0.0 0.0 0.0 0.12736805658604144 0.0 30 0.0 0.0 0.0 0.15580946728001188 0.0 31 0.0 0.0 0.0 0.19785329178414207 0.0 32 0.0 0.0 0.0 0.22876786862541426 0.0 33 0.0 0.0 0.0 0.2881238561606569 0.0 34 0.0 0.0 0.0 0.39941633278923677 0.0 35 0.0 0.0 0.0 0.561408715437503 0.0 36 0.0 0.0 0.0 0.8173814116832369 0.0 37 0.0 0.0 0.0 1.21185141217787 0.0 38 0.0 0.0 0.0 1.6298164910718702 0.0 39 0.0 0.0 0.0 2.093535143690953 0.0 40 0.0 0.0 0.0 2.5819854577830537 0.0 41 0.0 0.0 0.0 2.9912944551614977 0.0 42 0.0 0.0 0.0 3.4908740169164565 0.0 43 0.0 0.0 0.0 4.046099816985705 0.0 44 0.0 0.0 0.0 4.741059504377504 0.0 45 0.0 0.0 0.0 5.395211950338823 0.0 46 0.0 0.0 0.0 6.124795963792848 0.0 47 0.0 0.0 0.0 6.8667458079833805 0.0 48 0.0 0.0 0.0 7.553049413859623 0.0 49 0.0 0.0 0.0 8.222040856704753 0.0 50 0.0 0.0 0.0 8.89968838106544 0.0 51 0.0 0.0 0.0 9.492011673344216 0.0 52 0.0 0.0 0.0 10.128851956274422 0.0 53 0.0 0.0 0.0 10.7236484147005 0.0 54 0.0 0.0 0.0 11.36296186377801 0.0 55 0.0 0.0 0.0 12.005985062076471 0.0 56 0.0 0.0 0.0 12.656427758816838 0.0 57 0.0 0.0 0.0 13.330365533956572 0.0 58 0.0 0.0 0.0 13.984517979917891 0.0 59 0.0 0.0 0.0 14.578077855270317 0.0 60 0.0 0.0 0.0 15.212444972053223 0.0 61 0.0 0.0 0.0 15.80847801355295 0.0 62 0.0 0.0 0.0 16.415640302715538 0.0 63 0.0 0.0 0.0 16.9931245981105 0.0 64 0.0 0.0 0.0 17.552060147400702 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGAGCG 15 0.0022174108 70.0 5 CTCGAAA 15 0.0022174108 70.0 57 AATCTCG 660 0.0 58.86364 36 TCTCGTA 670 0.0 58.507465 38 CGTATGC 755 0.0 57.947018 41 TCGTATG 755 0.0 57.947018 40 ATCTCGT 680 0.0 57.647057 37 CTCGTAT 730 0.0 57.534245 39 CGTCTTC 725 0.0 57.448277 48 CCGTCTT 720 0.0 57.361107 47 GCCGTCT 725 0.0 56.96552 46 TATGCCG 765 0.0 56.73203 43 GTATGCC 765 0.0 56.73203 42 TCTTCTG 735 0.0 56.666668 50 CTTCTGC 755 0.0 56.55629 51 TAATCTC 690 0.0 56.304344 35 TACCACT 25 2.3777202E-4 55.999996 51 AATCGTC 25 2.3777202E-4 55.999996 28 TGAAAAA 745 0.0 55.906044 59 TTGAAAA 745 0.0 55.906044 58 >>END_MODULE