##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781178_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 287939 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.805517835374854 34.0 34.0 34.0 24.0 34.0 2 31.911529872646636 34.0 34.0 34.0 24.0 34.0 3 31.89740882617499 34.0 34.0 34.0 27.0 34.0 4 32.00838372016295 34.0 34.0 34.0 27.0 34.0 5 31.98821625413716 34.0 34.0 34.0 27.0 34.0 6 35.0353720753354 38.0 36.0 38.0 27.0 38.0 7 34.86495403540333 38.0 35.0 38.0 27.0 38.0 8 34.74348733585933 38.0 35.0 38.0 27.0 38.0 9 34.9893935868361 38.0 36.0 38.0 27.0 38.0 10-11 34.901078006105465 38.0 36.0 38.0 27.0 38.0 12-13 34.87812522791286 38.0 36.0 38.0 27.0 38.0 14-15 34.78229416647276 38.0 35.0 38.0 27.0 38.0 16-17 34.762255199886084 38.0 35.0 38.0 26.5 38.0 18-19 34.82356853361303 38.0 35.0 38.0 27.0 38.0 20-21 34.75101323544223 38.0 35.0 38.0 26.5 38.0 22-23 34.821166983284655 38.0 35.5 38.0 27.0 38.0 24-25 34.8169560219352 38.0 35.5 38.0 27.0 38.0 26-27 34.74626743858942 38.0 35.0 38.0 26.5 38.0 28-29 34.836651165698285 38.0 35.0 38.0 27.0 38.0 30-31 34.900124679185524 38.0 36.0 38.0 27.0 38.0 32-33 34.83924199222752 38.0 35.5 38.0 27.0 38.0 34-35 34.87662838309503 38.0 35.5 38.0 27.0 38.0 36-37 34.76371905160468 38.0 35.0 38.0 26.5 38.0 38-39 34.76139737930603 38.0 35.0 38.0 27.0 38.0 40-41 34.75966263687795 38.0 35.0 38.0 27.0 38.0 42-43 34.82462083983066 38.0 35.0 38.0 27.0 38.0 44-45 34.82902107738097 38.0 35.0 38.0 27.0 38.0 46-47 34.820330000451484 38.0 35.0 38.0 27.0 38.0 48-49 34.800857125988486 38.0 35.0 38.0 27.0 38.0 50-51 34.67304706899725 38.0 35.0 38.0 26.5 38.0 52-53 34.75202212968719 38.0 35.0 38.0 27.0 38.0 54-55 34.730632182510874 38.0 35.0 38.0 27.0 38.0 56-57 34.69063239088835 38.0 35.0 38.0 26.5 38.0 58-59 34.70449991143958 38.0 35.0 38.0 26.5 38.0 60-61 34.676202251171254 38.0 35.0 38.0 26.5 38.0 62-63 34.651130968712124 38.0 35.0 38.0 26.0 38.0 64-65 34.67353328309121 38.0 35.0 38.0 26.0 38.0 66-67 34.571039352084995 38.0 35.0 38.0 25.5 38.0 68-69 34.363259231990114 37.0 34.0 38.0 24.5 38.0 70-71 34.541303887281686 37.5 34.5 38.0 25.0 38.0 72-73 34.50946554652201 38.0 35.0 38.0 25.0 38.0 74-75 34.52586658979853 38.0 35.0 38.0 25.0 38.0 76 33.25598130159513 37.0 33.0 38.0 22.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 25.0 14 122.0 15 321.0 16 712.0 17 1197.0 18 1488.0 19 1524.0 20 1437.0 21 1489.0 22 1599.0 23 1800.0 24 2244.0 25 2830.0 26 3436.0 27 4246.0 28 5274.0 29 6407.0 30 7885.0 31 10111.0 32 12450.0 33 16105.0 34 21149.0 35 29300.0 36 46459.0 37 108324.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.93791393315946 20.556090005174706 11.100615060828856 25.405381000836986 2 21.342020358478706 22.008828258763142 32.999350556888785 23.64980082586937 3 19.886503738639085 23.110450477358054 29.615300462945278 27.387745321057583 4 14.167236810574463 17.133837375277402 37.61039664651194 31.088529167636203 5 13.796672211822644 34.44826855688184 36.065277715071595 15.689781516223922 6 29.648640857959496 37.658323464344875 18.352150976422088 14.340884701273534 7 27.85451085125669 29.77297274770003 23.166017802381756 19.206498598661522 8 24.53818343468582 35.15883572562244 20.988125957233997 19.314854882457745 9 24.253400893939343 17.081048416504885 22.69786308905706 35.967687600498714 10-11 24.757848016420144 25.444625424134976 28.10282733495636 21.69469922448852 12-13 24.16032562452464 23.987372325388364 27.68954535509257 24.162756694994425 14-15 22.51744293062072 25.591878835447783 24.85213882106974 27.038539412861752 16-17 22.74387978009231 28.162041265684746 26.331792497716535 22.762286456506413 18-19 22.059880738628667 27.506173182514353 27.815787371630798 22.618158707226183 20-21 22.499904493660118 27.57754246559167 27.364997447376005 22.557555593372207 22-23 22.61676952410059 27.219654162860884 27.729484369953354 22.434091943085164 24-25 22.251761657851144 27.473701026953623 27.35909341909224 22.915443896102992 26-27 21.64434133618579 27.604978832322125 27.804847554516755 22.94583227697533 28-29 22.219115854399714 27.39503853246695 28.396465918128495 21.989379695004846 30-31 22.49903625420662 27.620954438266438 27.644223255620116 22.235786051906828 32-33 21.837264142752456 27.885246527910425 27.644396903510817 22.633092425826305 34-35 22.528209099844066 27.02568946895002 28.02781144617436 22.418289985031553 36-37 22.70307252577803 27.2545573888914 27.40545740590889 22.636912679421684 38-39 22.099646105598755 27.4974907879794 28.037188432272114 22.365674674149734 40-41 22.34883082875192 26.770600717513084 28.402022650630865 22.47854580310413 42-43 21.92512997544619 26.736392083045367 28.226464633134103 23.112013308374344 44-45 21.640000138918314 26.70079426545206 28.413483411417 23.245722184212628 46-47 21.78048128249386 26.53565512139724 28.709032121386823 22.974831474722077 48-49 21.212652679907897 26.487554655673595 29.191252313858147 23.10854035056036 50-51 21.185737256849542 26.36357006171446 29.019340902066066 23.431351779369937 52-53 21.046645296399586 26.232118608455263 29.425156022629796 23.29608007251536 54-55 20.415608861599157 26.712775969910297 29.372367063857276 23.49924810463327 56-57 20.266271675597956 26.773900027436365 29.213131948086225 23.74669634887945 58-59 20.503648342183585 26.52610448740879 29.08289603006192 23.887351140345697 60-61 20.18517811064149 26.607892643928054 29.027155057147517 24.179774188282934 62-63 20.270612872865435 26.17689857921296 29.295093752496186 24.25739479542542 64-65 20.54844949798395 26.1692580720222 28.914457576083823 24.367834853910033 66-67 20.60262763988206 26.014711449300027 28.588346837350965 24.79431407346695 68-69 20.66045238748485 25.85669186876387 28.316935184188317 25.165920559562966 70-71 21.069566817971864 26.041105928686285 28.157179124745173 24.73214812859668 72-73 20.808921334032558 26.195826199299155 27.99099809334616 25.004254373322127 74-75 20.678685416008253 26.553019910467146 27.681557552120417 25.086737121404184 76 21.390641767874445 26.449004823938406 27.39816419449953 24.76218921368762 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.0 10 4.5 11 8.5 12 10.0 13 12.5 14 26.5 15 64.5 16 120.5 17 150.0 18 194.0 19 315.0 20 500.5 21 609.0 22 720.5 23 980.0 24 1335.5 25 1543.0 26 1868.0 27 2414.0 28 3041.0 29 3447.0 30 3743.5 31 4484.0 32 5707.0 33 6486.0 34 7019.5 35 8321.0 36 9890.5 37 10692.0 38 11414.0 39 13273.5 40 15159.0 41 16466.0 42 17025.0 43 17051.0 44 17194.0 45 17248.0 46 17185.0 47 17005.0 48 15896.0 49 14184.0 50 13401.0 51 12632.0 52 11011.5 53 9422.0 54 8684.0 55 8101.0 56 6941.5 57 5891.5 58 5418.0 59 4816.0 60 3858.0 61 3170.0 62 2838.0 63 2513.5 64 1969.0 65 1673.5 66 1478.5 67 1359.0 68 1258.5 69 1131.5 70 1063.5 71 1022.0 72 961.5 73 833.0 74 740.0 75 715.0 76 645.0 77 521.5 78 422.5 79 377.0 80 347.5 81 273.5 82 206.0 83 183.0 84 145.5 85 86.5 86 56.0 87 47.0 88 36.0 89 21.5 90 18.0 91 12.0 92 6.0 93 4.5 94 3.0 95 2.0 96 1.0 97 1.0 98 1.5 99 4.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 287939.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.24103222753527 #Duplication Level Percentage of deduplicated Percentage of total 1 71.89767743126052 40.43599593496459 2 16.230907920842792 18.25686030916554 3 5.572494838797483 9.402085854497495 4 2.030865196532373 4.568718198718278 5 0.9550723460914533 2.685712729807857 6 0.5808992643653649 1.9602224548874412 7 0.41357093437805126 1.6281759374109497 8 0.33007267703899884 1.485090245342334 9 0.24491535617754875 1.2396863195819818 >10 1.7070761332511424 16.922695943594263 >50 0.03274133503400553 1.1718988779358448 >100 0.0037065662302647774 0.2428571940934348 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 3.4729578139814336E-4 0.0 4 0.0 0.0 0.0 6.945915627962867E-4 0.0 5 0.0 0.0 0.0 6.945915627962867E-4 0.0 6 0.0 0.0 0.0 6.945915627962867E-4 0.0 7 0.0 0.0 0.0 6.945915627962867E-4 0.0 8 0.0 0.0 0.0 6.945915627962867E-4 0.0 9 0.0 0.0 0.0 0.0020837746883888603 0.0 10 0.0 0.0 0.0 0.0020837746883888603 0.0 11 0.0 0.0 0.0 0.0020837746883888603 0.0 12 0.0 0.0 0.0 0.0024310704697870036 0.0 13 0.0 0.0 0.0 0.00312566203258329 0.0 14 0.0 0.0 0.0 0.00312566203258329 0.0 15 0.0 0.0 0.0 0.00312566203258329 0.0 16 0.0 3.4729578139814336E-4 0.0 0.00312566203258329 0.0 17 0.0 3.4729578139814336E-4 0.0 0.00312566203258329 0.0 18 0.0 3.4729578139814336E-4 0.0 0.00312566203258329 0.0 19 0.0 3.4729578139814336E-4 0.0 0.0034729578139814335 0.0 20 0.0 3.4729578139814336E-4 0.0 0.0041675493767777206 0.0 21 0.0 3.4729578139814336E-4 0.0 0.004862140939574007 0.0 22 0.0 3.4729578139814336E-4 0.0 0.005556732502370294 0.0 23 0.0 3.4729578139814336E-4 0.0 0.005904028283768437 0.0 24 0.0 3.4729578139814336E-4 0.0 0.00729321140936101 0.0 25 0.0 6.945915627962867E-4 0.0 0.008682394534953584 0.0 26 0.0 6.945915627962867E-4 0.0 0.008682394534953584 0.0 27 0.0 6.945915627962867E-4 0.0 0.01354453547452759 0.0 28 0.0 6.945915627962867E-4 0.0 0.024310704697870035 0.0 29 0.0 6.945915627962867E-4 0.0 0.03542416970261062 0.0 30 0.0 6.945915627962867E-4 0.0 0.04757952205154564 0.0 31 0.0 6.945915627962867E-4 0.0 0.06286053643306395 0.0 32 0.0 6.945915627962867E-4 0.0 0.07987802972157297 0.0 33 0.0 6.945915627962867E-4 0.0 0.10488332598223929 0.0 34 0.0 6.945915627962867E-4 0.0 0.14273856615463693 0.0 35 0.0 6.945915627962867E-4 0.0 0.20247344055511757 0.0 36 0.0 6.945915627962867E-4 0.0 0.2861717238720701 0.0 37 0.0 6.945915627962867E-4 0.0 0.499064037869132 0.0 38 0.0 6.945915627962867E-4 0.0 0.7473805215688045 0.0 39 0.0 0.0010418873441944301 0.0 1.0526535134177726 0.0 40 0.0 0.0010418873441944301 0.0 1.4204397459184064 0.0 41 0.0 0.0010418873441944301 0.0 1.7746814429445126 0.0 42 0.0 0.0010418873441944301 0.0 2.175808070459368 0.0 43 0.0 0.0010418873441944301 0.0 2.7026557708403516 0.0 44 0.0 0.0010418873441944301 0.0 3.289932937184612 0.0 45 0.0 0.0010418873441944301 0.0 3.9331247243339735 0.0 46 0.0 0.0010418873441944301 0.0 4.638829752135001 0.0 47 0.0 0.0010418873441944301 0.0 5.380653541201435 0.0 48 0.0 0.0010418873441944301 0.0 6.1262975838632485 0.0 49 0.0 0.0010418873441944301 0.0 6.803871653371027 0.0 50 0.0 0.0010418873441944301 0.0 7.478667356627619 0.0 51 0.0 0.0010418873441944301 0.0 8.13297260878172 0.0 52 0.0 0.0010418873441944301 0.0 8.75810501529838 0.0 53 0.0 0.0010418873441944301 0.0 9.37906987243826 0.0 54 0.0 0.0010418873441944301 0.0 10.057338533508833 0.0 55 0.0 0.0010418873441944301 0.0 10.755055758337704 0.0 56 0.0 0.0010418873441944301 0.0 11.479862054115628 0.0 57 0.0 0.0010418873441944301 0.0 12.211614265521517 0.0 58 0.0 0.0010418873441944301 0.0 12.930863828797072 0.0 59 0.0 0.0010418873441944301 0.0 13.583085306262785 0.0 60 0.0 0.0010418873441944301 0.0 14.280455235310257 0.0 61 0.0 0.0010418873441944301 0.0 14.927814571836397 0.0 62 0.0 0.0010418873441944301 0.0 15.517522808650444 0.0 63 0.0 0.0010418873441944301 0.0 16.173911835492934 0.0 64 0.0 0.0010418873441944301 0.0 16.791403734818832 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGCGTT 15 0.0022232062 70.00001 31 CGGGTAG 30 5.8720226E-4 46.666668 10 GCGGGTA 30 5.8720226E-4 46.666668 9 ACGGTAC 35 0.001254202 40.0 3 GAAATCG 65 2.09858E-5 32.307693 48 TTACAGC 45 0.0043031503 31.111113 4 GGCTTAT 95 2.812194E-7 29.473686 1 AAATCGC 60 4.9751275E-4 29.166668 49 GGTCGTT 50 0.007201537 27.999998 11 CCTGGAC 120 7.369454E-8 26.250002 3 GCTTATG 110 1.0124768E-6 25.454544 2 TGCGGAG 70 0.0012243224 25.0 7 ATGCGGA 70 0.0012243224 25.0 6 GACTATC 85 1.3056933E-4 24.705883 38 GGGGACA 100 1.3940331E-5 24.499998 4 TAGACGG 75 0.0018297116 23.333334 27 TTAGACG 75 0.0018297116 23.333334 26 CTGACAC 90 1.9239906E-4 23.333334 3 CTTATGC 90 1.9239906E-4 23.333334 3 CGGGCTC 75 0.0018297116 23.333334 31 >>END_MODULE