##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781178_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 260910 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.3001303131348 34.0 34.0 34.0 33.0 34.0 2 33.29773485109808 34.0 34.0 34.0 33.0 34.0 3 33.37712621210379 34.0 34.0 34.0 33.0 34.0 4 33.464715802383964 34.0 34.0 34.0 34.0 34.0 5 33.44050055574719 34.0 34.0 34.0 34.0 34.0 6 36.86270744701238 38.0 37.0 38.0 34.0 38.0 7 36.75861408148403 38.0 37.0 38.0 34.0 38.0 8 36.570832854240926 38.0 37.0 38.0 34.0 38.0 9 36.52758039170595 38.0 37.0 38.0 34.0 38.0 10-11 36.47057797708022 38.0 37.0 38.0 34.0 38.0 12-13 36.41410448047219 38.0 37.0 38.0 34.0 38.0 14-15 36.42058180981948 38.0 37.0 38.0 34.0 38.0 16-17 36.35921773791729 38.0 37.0 38.0 34.0 38.0 18-19 36.36701544593922 38.0 37.0 38.0 34.0 38.0 20-21 36.31185082978805 38.0 37.0 38.0 34.0 38.0 22-23 36.36271319612127 38.0 37.0 38.0 34.0 38.0 24-25 36.353098769690696 38.0 37.0 38.0 34.0 38.0 26-27 36.14530681077766 38.0 37.0 38.0 33.5 38.0 28-29 36.14739373730406 38.0 37.0 38.0 34.0 38.0 30-31 36.18291173201487 38.0 37.0 38.0 34.0 38.0 32-33 36.134184201448775 38.0 37.0 38.0 34.0 38.0 34-35 36.13945230155993 38.0 37.0 38.0 33.5 38.0 36-37 36.068517879728645 38.0 37.0 38.0 32.5 38.0 38-39 35.9879441186616 38.0 37.0 38.0 32.0 38.0 40-41 36.053221417346975 38.0 37.0 38.0 32.5 38.0 42-43 36.06095780154076 38.0 37.0 38.0 32.5 38.0 44-45 36.04255107125063 38.0 37.0 38.0 32.0 38.0 46-47 36.048754359740904 38.0 37.0 38.0 32.5 38.0 48-49 36.03046452799816 38.0 37.0 38.0 32.0 38.0 50-51 35.93457897359242 38.0 37.0 38.0 32.0 38.0 52-53 35.969573799394425 38.0 37.0 38.0 32.0 38.0 54-55 35.97444329462267 38.0 37.0 38.0 32.0 38.0 56-57 35.926183358246135 38.0 37.0 38.0 32.0 38.0 58-59 35.92506228201296 38.0 37.0 38.0 32.0 38.0 60-61 35.92101490935572 38.0 37.0 38.0 32.0 38.0 62-63 35.88667739833659 38.0 37.0 38.0 32.0 38.0 64-65 35.85952052431873 38.0 37.0 38.0 32.0 38.0 66-67 35.82336246215171 38.0 36.5 38.0 31.0 38.0 68-69 35.743447932237174 38.0 36.0 38.0 31.0 38.0 70-71 35.60927139626691 38.0 36.0 38.0 31.0 38.0 72-73 35.507420183204935 38.0 36.0 38.0 31.0 38.0 74-75 35.52088267985129 38.0 36.0 38.0 31.0 38.0 76 34.655041968494885 37.0 35.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 3.0 21 10.0 22 25.0 23 70.0 24 151.0 25 336.0 26 582.0 27 1118.0 28 1962.0 29 3034.0 30 4936.0 31 7255.0 32 10673.0 33 15006.0 34 21278.0 35 29497.0 36 45726.0 37 119247.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50128396765168 20.196236250047907 11.046337817638266 27.256141964662145 2 20.58065999770036 21.740830171323445 33.85918515963359 23.81932467134261 3 19.35494998275267 23.419186692729294 30.389789582614696 26.836073741903338 4 13.957303284657543 18.597600705224025 37.023111417730256 30.421984592388178 5 13.367827986662068 34.63416503775248 37.15840711356406 14.839599862021386 6 29.094323713157795 38.9663102219156 18.214710053275077 13.724656011651529 7 27.423249396343568 29.652370549231538 22.956191790272506 19.96818826415239 8 23.97416733739604 36.575064198382584 20.482541872676403 18.968226591544976 9 23.58897704189184 16.87976696945307 22.167797324747998 37.363458663907096 10-11 24.258748227358094 26.246215169981983 28.04223678663141 21.452799816028513 12-13 23.686520256026984 23.775823080755817 27.715495764823117 24.82216089839408 14-15 21.93515005174198 24.952090759265648 24.435245870223447 28.677513318768927 16-17 23.157218964393852 28.64014411099613 25.42045149668468 22.782185427925338 18-19 22.538806484994826 27.466559349967422 26.90985397263424 23.08478019240351 20-21 22.12410409719827 27.311525046951058 26.39205089877736 24.17231995707332 22-23 22.049365681652677 27.784868345406462 26.9736690812924 23.19209689164846 24-25 22.79540837836802 27.91288183664865 26.712659537771643 22.579050247211683 26-27 22.257675060365642 28.29404775593116 26.997048790770762 22.45122839293243 28-29 21.829749722126405 27.074086849871605 28.526311755011307 22.569851672990687 30-31 22.77777777777778 27.04476639454218 28.10432716262313 22.073128665056917 32-33 22.357517918056036 27.34180368709517 27.274347476141198 23.0263309187076 34-35 21.987850216549766 26.562607795791653 28.293664482005287 23.15587750565329 36-37 21.96849488329309 27.7896592694799 27.93530336131233 22.306542485914683 38-39 21.546510290904912 27.408110076271512 28.150894944616915 22.894484688206663 40-41 21.6729906864436 26.357364608485685 28.573837721819785 23.39580698325093 42-43 22.475949561151353 26.314629565750643 28.477444329462266 22.73197654363574 44-45 21.19945575102526 27.426698861676442 28.52535357019662 22.84849181710168 46-47 22.30079337702656 26.1653443716224 27.93396190257177 23.599900348779272 48-49 21.674332145184163 25.92464834617301 28.66697328580737 23.734046222835463 50-51 20.865815798551225 26.01720899927178 29.262389329653903 23.854585872523092 52-53 20.4543712391246 25.873098003142847 30.547698440075123 23.12483231765743 54-55 19.841324594687823 26.24928136138898 29.673642252117588 24.235751791805605 56-57 20.536966770150627 26.13238281399716 28.82009121919436 24.51055919665785 58-59 19.609635506496492 25.98328925683186 30.377908090912577 24.02916714575907 60-61 20.582001456440917 27.02579433521138 28.331608600666897 24.06059560768081 62-63 19.044498102794066 27.826070292438004 28.429535088727913 24.699896516040013 64-65 19.39576865585834 27.891993407688474 27.76283009466866 24.949407841784524 66-67 19.371430761565293 28.01061668774673 27.422674485454756 25.19527806523322 68-69 19.525890153692842 28.164884442911347 26.934191866927293 25.375033536468518 70-71 20.021846613774866 27.635966425204096 26.70786861369821 25.634318347322832 72-73 19.919129201640413 26.56203288490284 27.025027787359623 26.493810126097124 74-75 20.121497834502318 26.419646621440346 27.042466750986932 26.416388793070407 76 20.46031198497566 26.307922272047833 26.921543827373423 26.310221915603083 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 1.0 10 3.0 11 6.0 12 7.0 13 15.0 14 22.0 15 46.5 16 90.5 17 109.0 18 164.5 19 272.0 20 419.0 21 514.0 22 621.5 23 877.0 24 1261.0 25 1497.0 26 1724.0 27 2209.5 28 2759.5 29 3051.0 30 3362.0 31 4103.0 32 5181.0 33 5829.0 34 6222.0 35 7174.0 36 8529.0 37 9325.0 38 9997.0 39 11591.0 40 13445.5 41 15087.5 42 15797.0 43 16277.0 44 16492.0 45 16007.0 46 15787.0 47 15427.5 48 14087.0 49 12569.0 50 12032.0 51 11505.0 52 10094.0 53 8616.5 54 8023.0 55 7528.0 56 6420.5 57 5324.0 58 4840.0 59 4305.0 60 3374.5 61 2687.5 62 2396.0 63 2159.0 64 1795.0 65 1553.0 66 1335.5 67 1233.0 68 1161.5 69 1078.0 70 979.5 71 893.0 72 888.5 73 838.0 74 698.5 75 605.0 76 558.5 77 497.0 78 427.0 79 372.0 80 319.0 81 241.0 82 178.5 83 141.0 84 122.5 85 75.0 86 42.0 87 38.0 88 27.5 89 14.5 90 9.5 91 6.5 92 6.0 93 3.5 94 1.5 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 260910.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.69278748259322 #Duplication Level Percentage of deduplicated Percentage of total 1 65.71788847649023 33.314229543434806 2 19.95504452327784 20.231536624484185 3 6.71350710499884 10.209791668097573 4 2.4690590704458186 5.006539469603162 5 1.1674646660267916 2.9591019104166403 6 0.7155684922971512 2.1764496905555477 7 0.5006011510178965 1.7763807433464243 8 0.3815855409296766 1.5474907786222776 9 0.32779811251158686 1.4955300049270548 >10 1.9947076798444885 17.698381613633572 >50 0.05071916272931326 1.6336051574140773 >100 0.005299017001570042 0.4862057163363016 >500 0.0 0.0 >1k 7.570024287957204E-4 1.4647570791283846 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTGTGCCTTATCTCGTATGCCGT 3817 1.4629565750641984 No Hit TCTTATACACATCTCCGAGCCCACGAGACTGTGCCTTATCTCGTATGCCG 377 0.14449427005480817 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.665478517496454E-4 0.0 2 0.0 0.0 0.0 7.665478517496454E-4 0.0 3 0.0 0.0 0.0 0.0011498217776244682 0.0 4 0.0 0.0 0.0 0.0015330957034992909 0.0 5 0.0 0.0 0.0 0.0015330957034992909 0.0 6 0.0 0.0 0.0 0.0015330957034992909 0.0 7 0.0 0.0 0.0 0.0015330957034992909 0.0 8 0.0 0.0 0.0 0.0015330957034992909 0.0 9 0.0 0.0 0.0 0.0030661914069985818 0.0 10 0.0 0.0 0.0 0.0030661914069985818 0.0 11 0.0 0.0 0.0 0.0030661914069985818 0.0 12 0.0 0.0 0.0 0.0034494653328734047 0.0 13 0.0 0.0 0.0 0.00421601318462305 0.0 14 0.0 0.0 0.0 0.00421601318462305 0.0 15 0.0 0.0 0.0 0.00421601318462305 0.0 16 0.0 0.0 0.0 0.00421601318462305 0.0 17 0.0 0.0 0.0 0.004599287110497873 0.0 18 0.0 0.0 0.0 0.004599287110497873 0.0 19 0.0 0.0 0.0 0.004599287110497873 0.0 20 0.0 0.0 0.0 0.0053658349622475185 0.0 21 0.0 0.0 0.0 0.0061323828139971635 0.0 22 0.0 0.0 0.0 0.0065156567398719865 0.0 23 0.0 0.0 0.0 0.007282204591621632 0.0 24 0.0 0.0 0.0 0.009581848146870568 0.0 25 0.0 0.0 0.0 0.010731669924495037 0.0 26 0.0 0.0 0.0 0.010731669924495037 0.0 27 0.0 0.0 0.0 0.0168640527384922 0.0 28 0.0 0.0 0.0 0.028362270514736884 0.0 29 0.0 0.0 0.0 0.03909394043923192 0.0 30 0.0 0.0 0.0 0.05135870606722625 0.0 31 0.0 0.0 0.0 0.06783948487984362 0.0 32 0.0 0.0 0.0 0.08700318117358476 0.0 33 0.0 0.0 0.0 0.11344908205894753 0.0 34 0.0 0.0 0.0 0.1552259399793032 0.0 35 0.0 0.0 0.0 0.21808286382277414 0.0 36 0.0 0.0 0.0 0.3089187842551071 0.0 37 0.0 0.0 0.0 0.5339005787436281 0.0 38 0.0 0.0 0.0 0.7903108351538845 0.0 39 0.0 0.0 0.0 1.1057452761488635 0.0 40 0.0 0.0 0.0 1.4871028323943123 0.0 41 0.0 0.0 0.0 1.8561956230117664 0.0 42 0.0 0.0 0.0 2.283162776436319 0.0 43 0.0 0.0 0.0 2.8289448468820666 0.0 44 0.0 0.0 0.0 3.4372005672454105 0.0 45 0.0 0.0 0.0 4.104480472193477 0.0 46 0.0 0.0 0.0 4.837683492392013 0.0 47 0.0 0.0 0.0 5.602314974512284 0.0 48 0.0 0.0 0.0 6.366179908780806 0.0 49 0.0 0.0 0.0 7.077536315204477 0.0 50 0.0 0.0 0.0 7.770878847112031 0.0 51 0.0 0.0 0.0 8.438542025985972 0.0 52 0.0 0.0 0.0 9.08934115212142 0.0 53 0.0 0.0 0.0 9.732091525813498 0.0 54 0.0 0.0 0.0 10.421601318462304 0.0 55 0.0 0.0 0.0 11.141389751255222 0.0 56 0.0 0.0 0.0 11.88187497604538 0.0 57 0.0 0.0 0.0 12.653405388831398 0.0 58 0.0 0.0 0.0 13.382009121919436 0.0 59 0.0 0.0 0.0 14.08646659767736 0.0 60 0.0 0.0 0.0 14.794756812694033 0.0 61 0.0 0.0 0.0 15.465486182974972 0.0 62 0.0 0.0 0.0 16.077574642597064 0.0 63 0.0 0.0 0.0 16.756352765321374 0.0 64 0.0 0.0 0.0 17.407151891456824 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAAAAG 15 0.0022229718 70.0 57 TCTCGTA 475 0.0 56.73684 38 TCGTATG 535 0.0 56.26168 40 CTCGTAT 530 0.0 56.132072 39 TCGTTCG 25 2.3876011E-4 55.999996 23 CGTATGC 545 0.0 55.871563 41 TATGCCG 540 0.0 55.740746 43 CCGTCTT 535 0.0 55.607475 47 ATCTCGT 480 0.0 55.416664 37 ATGCCGT 545 0.0 54.587162 44 CGTCTTC 540 0.0 54.444447 48 TGCCGTC 535 0.0 54.299065 45 GCCGTCT 555 0.0 53.603603 46 GTATGCC 575 0.0 52.95652 42 GACCGTT 20 0.0069460445 52.500004 16 CGACCGT 20 0.0069460445 52.500004 15 ACGGGTG 20 0.0069460445 52.500004 7 ACCGTTG 20 0.0069460445 52.500004 17 CGGTAAG 20 0.0069460445 52.500004 28 AAAGATC 20 0.0069460445 52.500004 69 >>END_MODULE